KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:25 2014 Check: 00 .. Name: bmy_05821T0/1-840 Len: 901 Check: 9841 Weight: 1.00 Name: ENSBTAP00000019050/1-488 Len: 901 Check: 4004 Weight: 1.00 Name: ENSP00000306185/1-489 Len: 901 Check: 6443 Weight: 1.00 Name: BACU000821/1-474 Len: 901 Check: 1491 Weight: 1.00 Name: ENSTTRP00000008630/1-490 Len: 901 Check: 5572 Weight: 1.00 // 1 50 bmy_05821T0/1-840 MVAGLSPARS PGSWLVPGLW LLALSGPGGL VSAQEQPSCR GAFDLYFVLD ENSBTAP00000019050/1-488 MVAGLSPARC PGRWLVPGLW LLALSGPGGL LSAQEQPSCH GAFDLYFVLD ENSP00000306185/1-489 MVAERSPARS PGSWLFPGLW LLVLSGPGGL LRAQEQPSCR RAFDLYFVLD BACU000821/1-474 MVAGLSPARS PGSWLVPGLW LLALSGPGGL VSAQEQPSCR GAFDLYFVLD ENSTTRP00000008630/1-490 MVAGLSPARS PGSWLVPGLW LLALSGPGGL VSAQEQPSCR GAFDLYFVLD 51 100 bmy_05821T0/1-840 KSGSVANNWI EIYNFVQQLT ERFKKKCNEQ MQVYQDNGKD MKRSCLDDQN ENSBTAP00000019050/1-488 KSGSVANNWI EIYNFVQQLT ERF------- ---------- ---------- ENSP00000306185/1-489 KSGSVANNWI EIYNFVQQLA ERF------- ---------- ---------- BACU000821/1-474 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008630/1-490 KSGSVANNWI EIYNFVQQLT ERF------- ---------- ---------- 101 150 bmy_05821T0/1-840 ILKVMLQPSN EIIFHCVFFS SNHYFAINWR QSIHLPTYLP ALPALSVYDV ENSBTAP00000019050/1-488 -----VSPQM RLSF--IVFS S--------Q ATIILP---- ---------- ENSP00000306185/1-489 -----VSPEM RLSF--IVFS S--------Q ATIILP---- ---------- BACU000821/1-474 ------NPQM RLSF--IVFS S--------Q ATIILP---- ---------- ENSTTRP00000008630/1-490 -----VSPQM RLSF--IVFS S--------Q ATIILP---- ---------- 151 200 bmy_05821T0/1-840 LSIVDSGARD SYLGIKMELK GWKDYDIMHT FRSPKCSTDG EKPLMWHRAW ENSBTAP00000019050/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000306185/1-489 ---------- ---------- ---------- ---------- ---------- BACU000821/1-474 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008630/1-490 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_05821T0/1-840 HCKSNDAIQS SLEYYGGRGK ISEGLDNLKR VSPVGETYIH EGLKLANEQI ENSBTAP00000019050/1-488 ---------- ---LTGDRGK ISEGLDNLKH VSPVGETYIH EGLKLANEQI ENSP00000306185/1-489 ---------- ---LTGDRGK ISKGLEDLKR VSPVGETYIH EGLKLANEQI BACU000821/1-474 ---------- ---LTGDRGK ISEGLDNLKR VSPVGETYIH EGLKLANEQI ENSTTRP00000008630/1-490 ---------- ---LTGDRGK ISEGLDNLKR VSPVGETYIH EGLKLANEQI 251 300 bmy_05821T0/1-840 EKAGGLKTSS IIIALTDGKL DGLVPSYAEK EAKISRSLGA RVYCVGVLDF ENSBTAP00000019050/1-488 EKARDLKTSS IIIALTDGKL DGLVPSYAEK EAKISRSLGA RVYCVGVLDF ENSP00000306185/1-489 QKAGGLKTSS IIIALTDGKL DGLVPSYAEK EAKISRSLGA SVYCVGVLDF BACU000821/1-474 EKAGGLKTSS IIIALTDGKL DGLVPSYAEK EAKISRSLGA RVYCVGVLDF ENSTTRP00000008630/1-490 EKAGGLKTSS IIIALTDGKL DGLVPSYAEK EAKISRSLGA RVYCVGVLDF 301 350 bmy_05821T0/1-840 EQAQLERIAD SKEQVFPVKG GFQALKGIIN SLSVRQLERV AEYLTAIVVL ENSBTAP00000019050/1-488 EQAQLERIAD SKEQVFPVKG GFQALRGIIN S--------- ---------- ENSP00000306185/1-489 EQAQLERIAD SKEQVFPVKG GFQALKGIIN S--------- ---------- BACU000821/1-474 EQAQLERIAD SKEQVFPVKG GFQALKGIIN S--------- ---------- ENSTTRP00000008630/1-490 EQAQLERIAD SKEQVFPVKG GFQALKGIIN S--------- ---------- 351 400 bmy_05821T0/1-840 SILMINSFTG AHNISVWNSV ELSLVIIRIR AILNRKHRVR FIEFVFGSGF ENSBTAP00000019050/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000306185/1-489 ---------- ---------- ---------- ---------- ---------- BACU000821/1-474 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008630/1-490 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_05821T0/1-840 KVHTLQLRFV LQYRKMEIVY LPLWISEKSN RTSIDLSCLS GLFHVLFNET ENSBTAP00000019050/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000306185/1-489 ---------- ---------- ---------- ---------- ---------- BACU000821/1-474 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008630/1-490 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_05821T0/1-840 REWECFTARE KIKSYLNVER IGLKKESHIH SMGLNILLLF HIYYPESALF ENSBTAP00000019050/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000306185/1-489 ---------- ---------- ---------- ---------- ---------- BACU000821/1-474 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008630/1-490 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_05821T0/1-840 LKEDAYLKFV SFHVLQMVLC IPSAALPRPL PPGSSHFYLL PNLCPVDVTV ENSBTAP00000019050/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000306185/1-489 ---------- ---------- ---------- ---------- ---------- BACU000821/1-474 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008630/1-490 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_05821T0/1-840 MKVQSMKDNA SIIIDGTPDP MFNQSITVFK LKAQKAFLYP ATVLPSCFSY ENSBTAP00000019050/1-488 ---------- ---------- ---------- ---------- ---------- ENSP00000306185/1-489 ---------- ---------- ---------- ---------- ---------- BACU000821/1-474 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008630/1-490 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_05821T0/1-840 EQEMLETTIL AQSCTEILEL RPSSVCVGEE FQIVLNGRGF NLGSRNGSVL ENSBTAP00000019050/1-488 --------IL AQSCTEILEL RPSSVCVGQE FQVVLNGRGF NLGSRKGSVL ENSP00000306185/1-489 --------IL AQSCTEILEL QPSSVCVGEE FQIVLSGRGF MLGSRNGSVL BACU000821/1-474 --------IL AQSCTEILEL RPSSVCVGEE FQIVLNGRGF NLGSRNGSVL ENSTTRP00000008630/1-490 --------IL AQSCTEILEL RPSSVCVGEE FQIVLNGRGF NLGSRDGRVL 651 700 bmy_05821T0/1-840 CTYTVNETYT KSVMPVSVES NSMLCPAPTL NEVGQYL-LD ITSGHPNTFV ENSBTAP00000019050/1-488 CTYTVNETYT INEKPVSVEQ NSMLCPAPTL HEVGETLHVS VSFNEGKSVI ENSP00000306185/1-489 CTYTVNETYT TSVKPVSVQL NSMLCPAPIL NKAGETLDVS VSFNGGKSVI BACU000821/1-474 CTYTVNETYT KSVMPVSVES NSMLCPAPIL NEVGQTLDVS VSFNGGNSVI ENSTTRP00000008630/1-490 CTYTVNETYT KSVMPVSVES NSMLCPAPTL NEVGXXXXXX XXXXXXXXXX 701 750 bmy_05821T0/1-840 GDELSYEIGL KSTQLKQFSL VRKNVKMKLV VLV------- ---------- ENSBTAP00000019050/1-488 SSSLIVTATE CSTGIAALIA I-----LVLL LLLGIGLMWW FWPLCCKVVI ENSP00000306185/1-489 SGSLIVTATE CSNGIAAIIV I-----LVLL LLLGIGLMWW FWPLCCKVVI BACU000821/1-474 SGSLTVTATE CSSGIAAIIA I-----LVLL LLLGIGLMWW FWPLCCKVVI ENSTTRP00000008630/1-490 XXXXXXXXXX XSSGIAAIIA I-----LVLL LLLGIGLMWW FWPLCCKVVI 751 800 bmy_05821T0/1-840 -----PLKGS VERQLTEGLS KKWWDISKNS LKN------- QKTEVMNWSS ENSBTAP00000019050/1-488 KDPPPPPPSA PKEEEEEPLP TKKWPTVDAS YYGGRGVGGI KRMEVR-WGD ENSP00000306185/1-489 KDPPPPPAPA PKEEEEEPLP TKKWPTVDAS YYGGRGVGGI KRMEVR-WGD BACU000821/1-474 KDPPPPPPSA PKEEEEEPLP TKKWPTVDAS YYGGRGVGGI KRMEVR-WGD ENSTTRP00000008630/1-490 KDPPPPPPSA PKEEEEEPLP TKKWPTVDAS YYGGRGVGGI KRMEVR-WGD 801 850 bmy_05821T0/1-840 TDDLVDEAAL AALISHFL-- ------PCSG SMSKQRHSCR API--WAYGW ENSBTAP00000019050/1-488 KGSTEEGARL EKAKNAVVTL PEEPEEPVRP RPPPSKPTHQ PPQTKWYTPI ENSP00000306185/1-489 KGSTEEGARL EKAKNAVVKI PEETEEPIRP RPPRPKPTHQ PPQTKWYTPI BACU000821/1-474 KGSTEEGARL EKAKNAVVTI PEEPEEPLRP RPPRPKPTLQ PPQTKWYTPI ENSTTRP00000008630/1-490 KGSTEEGARL EKAKNAVVTI PEEPEEPLRP RPPRPKPTLQ PPQTKWYTPI 851 900 bmy_05821T0/1-840 TEDLNCV--- ---TFELSHL DWVVTNNKL- VLGKAMA--- ---------- ENSBTAP00000019050/1-488 KGRLDALWAL LRRQYDRVSL MRPQEGDEGR CI--NFSRVP SQ-------- ENSP00000306185/1-489 KGRLDALWAL LRRQYDRVSL MRPQEGDEV- CIWECIEKEL TA-------- BACU000821/1-474 KGRLDALWAL LRRQYDRVSL MRPQEGDEV- CMWGCVRKIV TAQVCIRKGG ENSTTRP00000008630/1-490 KGRLDALWAL LRRQYARVSL MRPQEGDEV- CMWGCVRKIV TAQ------- 901 950 bmy_05821T0/1-840 - ENSBTAP00000019050/1-488 - ENSP00000306185/1-489 - BACU000821/1-474 K ENSTTRP00000008630/1-490 -