KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:25 2014 Check: 00 .. Name: ENSP00000263512/1-477 Len: 707 Check: 6845 Weight: 1.00 Name: ENSBTAP00000019057/1-477 Len: 707 Check: 9921 Weight: 1.00 Name: ENSTTRP00000002922/1-516 Len: 707 Check: 292 Weight: 1.00 Name: BACU010872/1-588 Len: 707 Check: 4289 Weight: 1.00 Name: bmy_21781T0/1-544 Len: 707 Check: 8521 Weight: 1.00 // 1 50 ENSP00000263512/1-477 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019057/1-477 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002922/1-516 ---------- ---------- ---------- ---------- ---------- BACU010872/1-588 ---------- ---------- ---------- ---------- ---------- bmy_21781T0/1-544 MVTVVGKPRE ISAYQRAEGE LRPEELCHQE RQHRARPCPW TLLRTTRRHP 51 100 ENSP00000263512/1-477 ---------- ---------- ---------- -------MVL MQDKG----- ENSBTAP00000019057/1-477 ---------- ---------- ---------- -------MVF RSGEG----- ENSTTRP00000002922/1-516 -KAGSGPPGX XXXXXXXXXX XXXXXXXFSQ PDGTGRAALL GRGPGLPTGG BACU010872/1-588 ---------- ---------- ---------- ---------- ---------- bmy_21781T0/1-544 HSCSPKPQG- ---------- -------ARA PRLSGGAMVL RRGRC----- 101 150 ENSP00000263512/1-477 SSQQWPGLGG EGGGTGPLSM LRAALLLISL PWGAQGTAST SLSTAGGHTV ENSBTAP00000019057/1-477 HSLQWPGPEG GTGCTGPQSM LRATLLLVSL LWGARGTPSA SLSPALGHPM ENSTTRP00000002922/1-516 AMVKVAGLGG GSVCMGPRGM LRASLLL-SM LWGARGTASA SLSAAVGRTV BACU010872/1-588 ---------- ---------M LRASLLLVSL LWGARGTASA SLSTAVGRTV bmy_21781T0/1-544 SSLRWPG--G GSVCTGPLGM LRASLLLVSL LWGARGTASA SLSTAVGRTV 151 200 ENSP00000263512/1-477 PPTGGRYLSI GDGSVMEFEF PEDSEGIIVI SSQYPGQANR TAPGPMLRVT ENSBTAP00000019057/1-477 PLTRGRYLSI GDGSVMEFEF PEESEGIIVI TSQYPGQGNG TGPSPMLRVT ENSTTRP00000002922/1-516 PLTGRRYLSI GDGSVTEFEF PEESEGIIVV SSQYPGQGNG TGPSPVLRVT BACU010872/1-588 PLTGSRYLSI GDGSVTEFES PEESEGTIVV SSQYPGQGNG TGPSPVLRVT bmy_21781T0/1-544 PLTGRRYLSI GDGSVTEFEF PEESEGIIVV SSQYPGQGNG TGPSPVLRVT 201 250 ENSP00000263512/1-477 SLDTEVLTIK NVSAITWGGG GGFVVSIHSG LAGLAPLHIQ LVDAHEAPPT ENSBTAP00000019057/1-477 SLDPEVLAIK NVSSIALGSG GSFVVSIRSG LPGIAPLHIQ LTDPREAPPR ENSTTRP00000002922/1-516 SLDTELLTIR NVSAIAWAGG GGFVVSIHSG LPGLAPLHLQ LLDPCEAPPT BACU010872/1-588 SLDTEVLTIK NVSAVAWAGG GGFVVSIHSG LPGLAPLPLQ LLDPREAPPT bmy_21781T0/1-544 SLDTEVLTIK NVSAIAWAGG GGFVVSIHSG LPGLAPLHLQ LLDPREAPPT 251 300 ENSP00000263512/1-477 LIEERRDFCI KVSPAEDTPA TLSADLAHFS ENPILYLLLP LIFVNKCSFG ENSBTAP00000019057/1-477 LIEERRDFCI KVSPAEDTPI TLGTDLVHFS ENPILYLLLP LIFVNKCSFG ENSTTRP00000002922/1-516 LVEERRDFCI KVSRAED-PA ALGTDLAHFS ENPVLYLLLP LIFVNKCSFG BACU010872/1-588 LVEERRDFCI KVSPAEDTPA TLGTDLVHFS ENPVLYLLLP LIFVNKCSFG bmy_21781T0/1-544 LVEERRDFCI KVSPAEDTPA TLGTDLVHFS ENPVLYLLLP LIFVNKCSFG 301 350 ENSP00000263512/1-477 CKVELEVLKG LMQSPQPMLL GLLGQFLVMP LYAFLMAKVF MLPKALALGL ENSBTAP00000019057/1-477 CKVELEVLKG LLQNPQPMLL GLLGQFLVMP FYAFLMAKVF MLPKALALGL ENSTTRP00000002922/1-516 CRVELEVLKG LLQSPQPMLL GLLGQFLVMP FYAFLMAKVF MLPKALALGL BACU010872/1-588 CQVELEVLKG LLQSPQPMLL GLLGQFLVMP FYAFLMAKVF MLPKALALGL bmy_21781T0/1-544 CQVELEVLKG LLQSPQPMLL GLLGQFLVMP FYAFLMAKVF MLPKALALGL 351 400 ENSP00000263512/1-477 IITCSSPGGG GSYLFSLLLG GDVTLAISMT FLSTVAATGF LPLSSAIYSR ENSBTAP00000019057/1-477 IITCSSPGGG GSYLFSLLLG GDVTLAISMT FISTVAATGF LPLSSAIYSR ENSTTRP00000002922/1-516 IITCSSPGGG GSYLFSLLLG GDVTLAISMT FISTVAATGF LPLSSAIYSR BACU010872/1-588 IITCSSPGGG GSYLFSLLLG GDVTLAISMT FISTVAATGF LPLSSAIYSR bmy_21781T0/1-544 IITCSSPGGG GSYLFSLLLG GDVTLAISMT FISTVAATGF LPLSSAIYSR 401 450 ENSP00000263512/1-477 LLSIHETLHV PISKILGTLL FIAIPIAVGV LIKSKLPKFS QLLLQVVKPF ENSBTAP00000019057/1-477 LLSIHETLHV PVSKILGTLL FIAIPIAAGV VIKSKLPKFS QLLLHVIKPF ENSTTRP00000002922/1-516 LLSSHETLHV PISKILGTLL FIAIPIAAGV LIRSKLPRFS QLLLQVIKPF BACU010872/1-588 LLSTHETLHV PISKILGTLL FIAIPIAAGV VIKSKLPKFS QLLLQVIKPF bmy_21781T0/1-544 LLSIHETLHV PISKILGTLL FIAIPIAAGV VIKSKLPKFS QLLLQVIKPF 451 500 ENSP00000263512/1-477 SFVLLLGGLF LAYRMGVFIL AGIRLPIVLV GITVPLVGLL VGYCLATCLK ENSBTAP00000019057/1-477 SFVLLLGGLF LAYRMGVFIL AGVRLPIVLV GFTVPLVGLL VGYGLATCLK ENSTTRP00000002922/1-516 SFVLLLGGLF LACHMGVFIL AGVRLPIVLV GLTVPPVGLL VGYCLATCLK BACU010872/1-588 SFVLLLGGLF LAYHMGVFIL AGVRLPIVLV GLTVPPVGLL VGYCLATCLK bmy_21781T0/1-544 SFVLLLGGLF LAYHMGVFIL AGVRLPIVLV GLTVPPVGLL VGYCLATCLK 501 550 ENSP00000263512/1-477 LPVAQRRTVS IEVGVQNSLL ALAMLQLSLR RLQADYASQA PFIVALSGTS ENSBTAP00000019057/1-477 LPVAQRRTVS IEVGVQNSLL ALAMLQLSLR RLQADYASQA PFLVALSGTS ENSTTRP00000002922/1-516 LPVAQRRTVS IEVGVQNSLL ALAMLQLSLR RLQADYASQA PFLVALSGTS BACU010872/1-588 LPVAQRRTVS IEVGVQNSLL ALAMLQLSLR RLQADYASQA PFLVALSGTS bmy_21781T0/1-544 LPVAQRRTVS IEVGVQNSLL ALAMLQLSLR RLQADYASQA PFLVALSGTS 551 600 ENSP00000263512/1-477 EMLALVIGHF IYSSLFP--- ---------- ---VP----- ---------- ENSBTAP00000019057/1-477 EMLALVIGHF IYSSVCA--- ---------- ---VP----- ---------- ENSTTRP00000002922/1-516 EMLALVTGHF IYSSVCA--- ---------- ---VP----- ---------- BACU010872/1-588 EMLALVTGHF IYSSVSEDEL VSTLKHLVSE RLNIPVRQQR LLFKGKALAD bmy_21781T0/1-544 EMLALVTGHF IYSSVCA--- ---------- ---VP----- ---------- 601 650 ENSP00000263512/1-477 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019057/1-477 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002922/1-516 ---------- ---------- ---------- ---------- ---------- BACU010872/1-588 GKRLSDYSIG PNSKLNLVVK PLEKVLLEES SERTVAEAPP PPPAAWPLIS bmy_21781T0/1-544 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000263512/1-477 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019057/1-477 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002922/1-516 ---------- ---------- ---------- ---------- ---------- BACU010872/1-588 KVLARHFSAA DASRVLDQLQ RDYERSLSRL TLDDIERLAG RFLHPEVTEA bmy_21781T0/1-544 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000263512/1-477 ------- ENSBTAP00000019057/1-477 ------- ENSTTRP00000002922/1-516 ------- BACU010872/1-588 MEKGFSK bmy_21781T0/1-544 -------