KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:26 2014 Check: 00 .. Name: bmy_08455T0/1-389 Len: 629 Check: 9515 Weight: 1.00 Name: ENSTTRP00000014686/1-623 Len: 629 Check: 9796 Weight: 1.00 Name: ENSP00000370128/1-629 Len: 629 Check: 3059 Weight: 1.00 Name: BACU000116/1-629 Len: 629 Check: 5443 Weight: 1.00 Name: ENSBTAP00000019060/1-629 Len: 629 Check: 2879 Weight: 1.00 // 1 50 bmy_08455T0/1-389 MGCEVLLGLG QQMLRRKVVD CSRDESRLSR CLNTFDLVAL GVGSTLGAGV ENSTTRP00000014686/1-623 MGCKALVGVG QQMLRRKVVD CSWEESRLSR CLNTFDLVAL GVGSTLGAGV ENSP00000370128/1-629 MGCKVLLNIG QQMLRRKVVD CSREETRLSR CLNTFDLVAL GVGSTLGAGV BACU000116/1-629 MGCEVLVGIG QQMLRRKVVD CSWDESRLSR CLNTFDLVAL GVGSTLGAGV ENSBTAP00000019060/1-629 MGCTMLKGVG QQMLRRKVVD CSREESRLSR CLNTFDLVAL GVGSTLGAGV 51 100 bmy_08455T0/1-389 YVLAGAVARE DAGPAIVISF LVAALASVLA GLCYGEFGAR VPKTGSAYLY ENSTTRP00000014686/1-623 YVLAGAVARE NAGPAIVISF LVAALASVLA GLCYGEFGAR VPKTGSAYLY ENSP00000370128/1-629 YVLAGAVARE NAGPAIVISF LIAALASVLA GLCYGEFGAR VPKTGSAYLY BACU000116/1-629 YVLAGAVARE DAGPAIVISF LVAALASVLA GLCYGEFGAR VPKTGSAYLY ENSBTAP00000019060/1-629 YVLAGAVARE NAGPAIVISF LIAALASVLA GLCYGEFGAR VPKTGSAYLY 101 150 bmy_08455T0/1-389 SYVTVGELWA FITGWNLILS YIIGTSSVAR AWSATFDELI GKPIGEFSRT ENSTTRP00000014686/1-623 SYVTVGELWA FITGWNLILS YIIGTSSVAR AWSATFDELI GNPIGEFSRT ENSP00000370128/1-629 SYVTVGELWA FITGWNLILS YIIGTSSVAR AWSATFDELI GRPIGEFSRT BACU000116/1-629 SYVTVGELWA FITGWNLILS YIIGTSSVAR AWSATFDELI GKPIGEFSRT ENSBTAP00000019060/1-629 SYVTVGELWA FITGWNLILS YIIGTSSVAR AWSATFDELI GKPIGEFSRT 151 200 bmy_08455T0/1-389 HMALNAPGVL AENPDIFAVI IILILTGLLT LGVKESAMVN KIFTCINVLV ENSTTRP00000014686/1-623 HMALNAPGVL AENPDIFAVI IILILTGLLT LGVKESAMVN KVFTCVNVLV ENSP00000370128/1-629 HMTLNAPGVL AENPDIFAVI IILILTGLLT LGVKESAMVN KIFTCINVLV BACU000116/1-629 HMALNAPGVL AENPDIFAVI IILILTGLLT LGVKESAMVN KIFTCINVLV ENSBTAP00000019060/1-629 HMALHAPGVL AENPDIFAVI IIVILTGLLT LGVKESAMVN KIFTCINVLV 201 250 bmy_08455T0/1-389 LGFIMVSGFV KGSIKNWQLT EEDFQNTSRR LCLNNDTEEG KPGVGGFMPF ENSTTRP00000014686/1-623 LGFIMVSGFV KGSIKNWQLT EEDFQNTSGH LCLNNDTKEG CVGM-----F ENSP00000370128/1-629 LGFIMVSGFV KGSVKNWQLT EEDFGNTSGR LCLNNDTKEG KPGVGGFMPF BACU000116/1-629 LGFIMVSGFV KGSIKNWQLT EEDFQNTSSR LCLNNDTEEG RPGVGGFMPF ENSBTAP00000019060/1-629 LGFIMVSGFV KGSIKNWQLT EEDFRNTSGH LCLNNDTKEG KPGVGGFMPF 251 300 bmy_08455T0/1-389 GFSGVLSGAA TCFYAFVGFD CIATTGMPPP SAHLGPPGQV AASL------ ENSTTRP00000014686/1-623 GFSGVLSGAA T-FYAFVGFD CIATTGEEVK NPQKAIPVGI VASLLICFVA ENSP00000370128/1-629 GFSGVLSGAA TCFYAFVGFD CIATTGEEVK NPQKAIPVGI VASLLICFIA BACU000116/1-629 GVSGILSGAA TCFYAFVGFD CIATTGEEVK NPQKAIPVGI VASLLICFVA ENSBTAP00000019060/1-629 GFSGVLSGAA TCFYAFVGFD CIATTGEEVK NPQKAIPVGI VASLLICFIA 301 350 bmy_08455T0/1-389 ---------- ---------- ---------- ---PGRACVP VAALSLLSTV ENSTTRP00000014686/1-623 YFGVSAALTL MMPYFCLDKD SPLPDAFKHV GWEGAKYAVA IGSLCALSTS ENSP00000370128/1-629 YFGVSAALTL MMPYFCLDNN SPLPDAFKHV GWEGAKYAVA VGSLCALSAS BACU000116/1-629 YFGVSAALTL MMPYFCLDKD SPLPDAFKYV GWEGAKYAVA IGSLCALSTS ENSBTAP00000019060/1-629 YFGVSAALTL MMPYFCLDKD SPLPDAFKHV GWEGAKYAVA VGSLCALSTS 351 400 bmy_08455T0/1-389 CVCTFL---- ---------L IFRFIT---- ----PRVAGL TGNGI----- ENSTTRP00000014686/1-623 LLGSMFPMPR VIYAMAEDGL LFKFLAQIND RTKTPIIATL TSGAIAXXXX ENSP00000370128/1-629 LLGSMFPMPR VIYAMAEDGL LFKFLANVND RTKTPIIATL ASGAVAAVMA BACU000116/1-629 LLGSMFPMPR VIYAMAEDGL LFKFLAQINN RTKTPIIATL TSGAIAGVMA ENSBTAP00000019060/1-629 LLGSMFPMPR VIYAMAEDGL LFKFLAKIND RTKTPIIATL TSGAIAAVMA 401 450 bmy_08455T0/1-389 ----LNKTAG PLRAGRMAPY TAAADC---- ---------- ---------- ENSTTRP00000014686/1-623 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XYQPEQPNMV YQMARTSDEL ENSP00000370128/1-629 FLFDLKDLVD LMSIGTLLAY SLVAACVLVL RYQPEQPNLV YQMASTSDEL BACU000116/1-629 FLFDLKDLVD LMSIGTLLAY SLVAACVLVL RYQPEQPNMV YQMARTSDEL ENSBTAP00000019060/1-629 FLFDLKDLVD LMSIGTLLAY SLVAACVLVL RYQPEQPNTV YQMARTSDEL 451 500 bmy_08455T0/1-389 ---------- ---------- -------RPV RSGRN----- ---------- ENSTTRP00000014686/1-623 DPVYQNELVS TSDSQMGFLP EAEKFSLKTV LSPQNTEPSK FSGLIVNIST ENSP00000370128/1-629 DPADQNELAS TNDSQLGFLP EAEMFSLKTI LSPKNMEPSK ISGLIVNIST BACU000116/1-629 DPVDQNELVS TSDSQTGFLP EAEKFSLKTV LSPRNTEPSK FSGLIVNIST ENSBTAP00000019060/1-629 DPVDQNELVS SSDSQTGFLP EAERLSLKTI LSPKNTEPSK FSGLIVNIST 501 550 bmy_08455T0/1-389 ---------- ---------- ---------- ---------- -------RAA ENSTTRP00000014686/1-623 SLIALLVITF CMVAVLGNGA LVNEELWAVF VLVSSAFLCC VVTAIIWRQP ENSP00000370128/1-629 SLIAVLIITF CIVTVLGREA LTKGALWAVF LLAGSALLCA VVTGVIWRQP BACU000116/1-629 SLIALLVITF CTVAVLGKGA LVNGELWAVL VLMGSAFLCC VVTAVIWRQP ENSBTAP00000019060/1-629 SLLALLVITF CLAAVLGKDA LVKGELWAVF LLMGSAFLCS VVTAIIWRQP 551 600 bmy_08455T0/1-389 KNTVVLVTEQ AGLPGLPRV- ---------- ---------- ---------- ENSTTRP00000014686/1-623 ESKTKLSFKV PFLPVLPVLS IFVNVYLMMQ LDRGTWVRFA VWMLIGFFIY ENSP00000370128/1-629 ESKTKLSFKV PFLPVLPILS IFVNVYLMMQ LDQGTWVRFA VWMLIGFIIY BACU000116/1-629 ESKTKLSFKV PFLPVLPVLS IFVNVYLMMQ LDQGTWVRFA VWMLIGFFIY ENSBTAP00000019060/1-629 ESKTKLSFKV PFLPVLPVLS IFVNVYLMMQ LDKGTWVRFA VWMLIGFFIY 601 650 bmy_08455T0/1-389 ---------- ---------- ------LC- ENSTTRP00000014686/1-623 FGYGLWHSEE ASLAADPART PDGHLDHCK ENSP00000370128/1-629 FGYGLWHSEE ASLDADQART PDGNLDQCK BACU000116/1-629 FGYGLWHSEE ASLAADPART PDGHLDHCK ENSBTAP00000019060/1-629 FGYGLWHSEE ATLAADPSRT PDGHLDHCK