KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:26 2014 Check: 00 .. Name: ENSP00000358903/1-508 Len: 545 Check: 9548 Weight: 1.00 Name: ENSBTAP00000019061/1-509 Len: 545 Check: 8576 Weight: 1.00 Name: bmy_15433T0/1-522 Len: 545 Check: 3979 Weight: 1.00 Name: BACU012356/1-509 Len: 545 Check: 9348 Weight: 1.00 Name: ENSTTRP00000011973/1-508 Len: 545 Check: 6043 Weight: 1.00 // 1 50 ENSP00000358903/1-508 MWELVALLLL TLAYLFWPKR RCPGAKYPKS LLSLPLVGSL PFLPRHGHMH ENSBTAP00000019061/1-509 MWLLLAVFLL TLAYLFWPKT KHSGAKYPRS LPSLPLVGSL PFLPRRGQQH bmy_15433T0/1-522 MWVLLVPLLL ALAYLFWPQT TGSGAKYPKS LPSLPLVGSL PFLPRHGHQH BACU012356/1-509 MWVLLVPLLL TLAYLLWPKT TGSGAKYPKS LPSLPLVGSL PFLPRHGHQH ENSTTRP00000011973/1-508 MWVLLALLLL TLAYLFWPKT TGSGAKYPKS LPSLPLVGSL PFLPRRGHQH 51 100 ENSP00000358903/1-508 NNFFKLQKKY GPIYSVRMGT KTTVIVGHHQ LAKEVLIKKG KDFSGRPQMA ENSBTAP00000019061/1-509 KNFFKLQEKY GPIYSFRLGS KTTVMIGHHQ LAREVLLKKG KEFSGRPKVA bmy_15433T0/1-522 VNFFKLQEKY GPIYSFRLGS KTTVMIGHYQ LAREVLLKKG KEFSGRSKVT BACU012356/1-509 VNFFKLQEKY GPIYSFRLGS KTTVMIGHYQ LAREVLLKKG KEFSGRSKVL ENSTTRP00000011973/1-508 VNFFKLQEKY GPIYSFRLGS KTTVMIGHYQ LAREVLLKKG KEFSGRSKVL 101 150 ENSP00000358903/1-508 TLDIASNNRK GIAFADSGAH WQLHRRLAMA TFALFKDGDQ KLEKIICQEI ENSBTAP00000019061/1-509 TLDILSDNQK GIAFADHGAH WQLHRKLALN AFALFKDGNL KLEKIINQEA bmy_15433T0/1-522 SCQTTKKASP SPTMVPSGSC IG-------- ---------- -----INREA BACU012356/1-509 TLDILSDNQK GIAFADHGAV WQLHRKLAQN AFALFKDGNL KLEKIINREA ENSTTRP00000011973/1-508 TLDILSDNQK GIAFADHGAV WQLHRKLAQN AFALFKDGNL KLEKIINREV 151 200 ENSP00000358903/1-508 STLCDMLATH NGQSIDISFP VFVAVTNVIS LICFNTSYKN GDPELNVIQN ENSBTAP00000019061/1-509 NVLCDFLATQ HGEAIDLSEP LSLAVTNIIS FICFNFSFKN EDPALKAIQN bmy_15433T0/1-522 SLLCDSLATR HGESINLSEH LSLAVTNIIS FICFNFSFKN EDPALKAIYK BACU012356/1-509 GLLCDSLATR HGESINLSEH LSLAVTNIIS FICFNFSFKN EDPALKAIYK ENSTTRP00000011973/1-508 SLLCDSLATR HGESINLSEH LSLAVTNIIS FICFSFSFKN EDPALKAIYK 201 250 ENSP00000358903/1-508 YNEGIIDNLS KDSLVDLVPW LKI--FPNKT LEKLK----- ---------- ENSBTAP00000019061/1-509 VNDGILEVLS KEVLLDIFPV LKI--FPSKA MEKMK----- ---------- bmy_15433T0/1-522 FNDGILEAQG KEILSDIFPG FKVRMRPGAT VRSQQTLTAH PVLLSSFSSA BACU012356/1-509 FNDGILEAQG KEILSDIFPG FKI--FPSKT LEKIK----- ---------- ENSTTRP00000011973/1-508 FNDGILEAQG KEILSDIFPG FKI--FPSKA LEKIK----- ---------- 251 300 ENSP00000358903/1-508 ---------- --SHVKIRND LLNKILENY- ------KEKF RSDSITNMLD ENSBTAP00000019061/1-509 ---------- --GCVQMRNE LLNEILEKC- ------QENF SSDSITNLLH bmy_15433T0/1-522 PDPPFFLTTS ATSAVRVWQG LQMGLLPHHC LPISPNQENF TSDSITNLLD BACU012356/1-509 ---------- --SCVRMRNE LLSEILEKS- ------KENF TSDSITNLLD ENSTTRP00000011973/1-508 ---------- --SCVRMRNE LLSEILEKS- ------KENF TSDSITNLLD 301 350 ENSP00000358903/1-508 TLMQAKMNSD NGNAGPDQDS ELLSDNHILT TIGDIFGAGV ETTTSVVKWT ENSBTAP00000019061/1-509 ILIQAKVNAD NNNAGPDQDS KLLSNRHMLA TIGDIFGAGV ETTTSVIKWI bmy_15433T0/1-522 ILIQAKVNAD NNNAGPDQDS KLLSDRHMLT TIGDIFGAGV ETTTSVIKWI BACU012356/1-509 ILIQAKVNAD NNNAGPDQDS KLLSDRHMLT TIGDIFGAGV ETTTSVIKWI ENSTTRP00000011973/1-508 ILIQAKMNAD NNNAGPDQDS KLLSDRHMLT TIGDIFGAGV ETTTSVIKWI 351 400 ENSP00000358903/1-508 LAFLLHNPQV KKKLYEEIDQ NVGFSRTPTI SDRNRLLLLE ATIREVLRLR ENSBTAP00000019061/1-509 VAYLLHHPSL KKRIQDDIDQ IIGFNRTPTI SDRNRLVLLE ATIREVLRIR bmy_15433T0/1-522 VAFLLHYPPL KKRIQDDVDQ NIGFNRAPTI SDRNRLVLLE ATIREVLRIR BACU012356/1-509 VAFLLHYPPL KKRIQDDVDQ NIGFNRAPSI SDRNRLVLLE ATIREVLRIR ENSTTRP00000011973/1-508 VAFLLHYPPL KKRIQDDVDQ NIGFNRTPTI SDRNRLVLLE ATIREVLRIR 401 450 ENSP00000358903/1-508 PVAPMLIPHK ANVDSSIGEF AVDKGTEVII NLWALHHNEK EWHQPDQFMP ENSBTAP00000019061/1-509 PVAPTLIPHK AVIDSSIGDL TIDKGTDVVV NLWALHHSEK EWQHPDLFMP bmy_15433T0/1-522 PVSPTLIPHK AIVDSSIGDL TIDKGTDVVV NLWALHHSEK EWHRPDLFMP BACU012356/1-509 PVSPTLIPHK AIVDSSIGDL TIDKGTDVVV NLWALHHSEK EWHRPDLFMP ENSTTRP00000011973/1-508 PVSPTLIPHK AIVDSSIGDL TIDKGTDVVV NLWALHHSEK EWHRPDLFMP 451 500 ENSP00000358903/1-508 ERFLNPAGTQ LISPSVSYLP FGAGPRSCIG EILARQELFL IMAWLLQRFD ENSBTAP00000019061/1-509 ERFLDPTGAQ LISPSLSYLP FGAGPRSCVG EMLARQELFL FMSWLLQRFN bmy_15433T0/1-522 ERFLDPTGTK LISPSLSYLP FGAGPRSCIG EMLARQELFL FMAWLLQRFD BACU012356/1-509 ERFLDPTGTK LISPSLSYLP FGAGPRSCIG EMLARQELFL FMAWLLQRFD ENSTTRP00000011973/1-508 ERFLDPTGTK LISPSLSYLP FGAGPRSCIG EMLARQELFL FMTWLLQRFD 501 550 ENSP00000358903/1-508 LEVPDDGQLP SLEGIPKVVF LIDSFKVKIK VRQAWREAQA EGST- ENSBTAP00000019061/1-509 LEIPDDGKLP SLEGHASLVL QIKPFKVKIE VRQAWKEAQA EGSTS bmy_15433T0/1-522 LEIPDDGKLP SLEGNPGLVL QIDPFKVKIK VRQAWKEAQA EGSTS BACU012356/1-509 LEIPDDGKLP SLEGNPGLVL QIDPFKVKIK VRQAWKEAQA EGSTS ENSTTRP00000011973/1-508 LEIPDDGKLP SLEGNPGLVL QIDPFKVKIK VRQAWKEAQA EGST-