KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:30 2014 Check: 00 .. Name: ENSP00000323184/1-984 Len: 1493 Check: 9925 Weight: 1.00 Name: ENSBTAP00000019089/1-1009 Len: 1493 Check: 4319 Weight: 1.00 Name: ENSTTRP00000000199/1-948 Len: 1493 Check: 3314 Weight: 1.00 Name: bmy_06713T0/1-952 Len: 1493 Check: 976 Weight: 1.00 Name: BACU006435/1-1446 Len: 1493 Check: 8502 Weight: 1.00 // 1 50 ENSP00000323184/1-984 MRAPARGTGC CGRSGGRWLA GAAQPRC--- ------LWAG GAGQRFMVP- ENSBTAP00000019089/1-1009 VSALVRGAGC YGRPGCCRRA GGRAQGRGGC RTTLLFLVPA ALGLALRRP- ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------- -------TP- bmy_06713T0/1-952 -LRPARLATD VSA------- ---------- ---------- --------P- BACU006435/1-1446 MAQRRRLAED AGG------- ---------- ---------- --------PR 51 100 ENSP00000323184/1-984 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019089/1-1009 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------- ---------- bmy_06713T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU006435/1-1446 GPTPGSQRAA LYVHWPYCEK RCSYCNFNKY IPRGVDEAAM RRCLVIEAQT 101 150 ENSP00000323184/1-984 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019089/1-1009 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------- ---------- bmy_06713T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU006435/1-1446 LLQLSGVRRV ESVFFGGGTP SLASPHTVAA VLEAVAQATH LPADSEVTLE 151 200 ENSP00000323184/1-984 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019089/1-1009 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------- ---------- bmy_06713T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU006435/1-1446 ANPTSAPSSR LAAFRAAGVN RLSIGLQSLD DTELQLLGRT HSASEALQML 201 250 ENSP00000323184/1-984 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019089/1-1009 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------- ---------- bmy_06713T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU006435/1-1446 AEARRHFPGR VSVDLMLGLP AQHVGPWLGQ LRKLLRLCDD HVSLYQLSLE 251 300 ENSP00000323184/1-984 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019089/1-1009 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------- ---------- bmy_06713T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU006435/1-1446 RGTALFTQVQ QGALPAPDPE LAAEMYQEGR AVLREAGFRQ YEVSNFARNG 301 350 ENSP00000323184/1-984 ---------- ---------- ---------- -GG-----TM KS---LKKDS ENSBTAP00000019089/1-1009 ---------- ---------- ---------- -GG-----TM KS---LKKES ENSTTRP00000000199/1-948 ---------- ---------- ---------- -GG-----TM KS---LKKES bmy_06713T0/1-952 ---------- ---------- ---------- -AGASCDVTI RVWGFLRVSA BACU006435/1-1446 ALSTHNWTYW QCGQYLGVGP GAHGRFIPQG AGGHTREARI QT---LEPDS 351 400 ENSP00000323184/1-984 ---------- --RLRITPTR L--------- ---LE----- ---------- ENSBTAP00000019089/1-1009 ---------- --RLRIPTNR F--------- ---LE----- ---------- ENSTTRP00000000199/1-948 ---------- --RLRIPTNR F--------- ---LE----- ---------- bmy_06713T0/1-952 ---------- --RRAAGGWR LAGGRGKMKK VVSKQ----- ---------- BACU006435/1-1446 WMKEVTLFGH GTRRRVPLGE LALLEEVLAM GLRTDVGITH QHWQQFEPQL 401 450 ENSP00000323184/1-984 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019089/1-1009 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------- ---------- bmy_06713T0/1-952 ---------- ---------- ---------- ---------- ---------- BACU006435/1-1446 TLWDLFVADE EVQELLEQGL LLLDHSQDMF GCQEPHSTSR VAPSPLPTAA 451 500 ENSP00000323184/1-984 -ASENVK--- ---------- ---------- ---------- ---------- ENSBTAP00000019089/1-1009 -APESVK--- ---------- ---------- ---------- ---------- ENSTTRP00000000199/1-948 -APESVK--- ---------- ---------- ---------- ---------- bmy_06713T0/1-952 -SPPKLF--- ---------- ---------- ---------- ---------- BACU006435/1-1446 FSPERVKDRS EKPDPLSEAL AAMMGDKTRP YQQPKQVVPG PAMRLPYEEG 501 550 ENSP00000323184/1-984 ---------- ---------- ---------- ---------E KKRAKGPEQP ENSBTAP00000019089/1-1009 ---------- ---------- ---------- ---------E KKRAKVPEQP ENSTTRP00000000199/1-948 ---------- ---------- ---------- ---------E KKRAKVPEQP bmy_06713T0/1-952 ---------- ---------- ---------- ---------E KKRAKVPEQP BACU006435/1-1446 ALILRQVVLQ TSQGCVTVVY GFAFERCCSG GARLSSCPTE KKRAKVPEQP 551 600 ENSP00000323184/1-984 TPTIQEEPEP VSNVLQGDDI LALAIKKEDL KEQHIPRLTE KEDKRVITQK ENSBTAP00000019089/1-1009 TPPIQEEPEP VSNVLQGDDI LALAIKKEDL RKQHLPRLIE TEDKHVITQR ENSTTRP00000000199/1-948 TPPIQEEPEP VSNVLQGDDI LALAIKKEDL RKQHIPRLIE TEDKPAITQK bmy_06713T0/1-952 TPPIQEEPEP VSNVLQGDDI LALAIKKEDL RKQHIPRLIE TEDKPVITQK BACU006435/1-1446 TPPIQEEPEP VSNVLQGDDI LALAIKKEDL RKQHIPRLIE TEDKPVITQK 601 650 ENSP00000323184/1-984 FIIRKLKPMD PRRKVCHLVA RPANPDEATK PLDYSGPGDS FDGSDQILPH ENSBTAP00000019089/1-1009 FIIRKPKPKD HR-KVSHLVA HPATPDAATK PLDYSGPGDI FHGSDQILPH ENSTTRP00000000199/1-948 LIIRKLKPKD HRKKVCHLVA HPATPDAATK PLDYSGPGDI LYGSDQILPH bmy_06713T0/1-952 LIIRKLKPKD HRKKVCHLVA HPATPDAATK PLDYSGPGDI LHGSDQILPH BACU006435/1-1446 LIIRKLKPKD HRKKVCHLVA HPATPDAATK PLDYSGPGDI LHGSDQILPH 651 700 ENSP00000323184/1-984 HILGSLQDFK RIALARGNTQ LAERIPTSPC LMTLISAEGE SKQKAPKEEK ENSBTAP00000019089/1-1009 HILGSLQDFK RIAVARGNTQ LAELIHTPPC LMTLISTKEE PKQEAPKEEK ENSTTRP00000000199/1-948 HILGSLQDFK RIAVARGNTQ LAELIHTPPC LMTLISAKEE PKQEAPKEEK bmy_06713T0/1-952 HILGSLQDFK RIAVARGNTQ LAELIHTPPC LMTLISAKEE PKQEAPKEEK BACU006435/1-1446 HILGSLQDFK RIAVARGNTQ LAELIHTPPC LMTLISAKEE PKQEAPKEEK 701 750 ENSP00000323184/1-984 R-PPWAPPPQ HNFLKNWQRN TALRKKQQEA LSEHLKKPVS ELLMHTGETY ENSBTAP00000019089/1-1009 AHPPWVPPLQ HNFLKNWQRN IALRKKQQDA LSERLKKPVS ELLMHTGETY ENSTTRP00000000199/1-948 AHPPWAPPLQ HNFLKNWQRH IALRKKQQET LSERLKKPVG ELLMHMGETY bmy_06713T0/1-952 AHPPWAPPLQ HNFLKNWQRN IALRKKQQET LSERLKKPVG ELLMHTGETY BACU006435/1-1446 AHPPWAPPLQ HNFLKNWQRN IALRKKQQET LSERLKKPVG ELLMHTGETY 751 800 ENSP00000323184/1-984 RRIQEERELI DCTLPTRRDR KSWENS-GFW SRLEYLGDEM TGLVMTKTKT ENSBTAP00000019089/1-1009 RQIQEERELL DRMLSTRSDG KGCKLTSGFW SRLEYVGDEM TGLVMTKTKT ENSTTRP00000000199/1-948 RKIQEERELL DRTLPTRPDG KGCELTSGFW SQPEYLGDEM MGLVMTKTKT bmy_06713T0/1-952 RKIQQERELL DRTLPTRPDG KGCELTTGFW SRLEYLGDEM MGLVMTKTKT BACU006435/1-1446 RKIQEERELL DRTLPTRPDG RGCGLTTGFW SRLEYLGDEM MGLVMTKTKT 801 850 ENSP00000323184/1-984 QRGLMEPITH IRKPHSIRVE TGLPAQRDAS YRYTWDRSLF LIYRRKELQR ENSBTAP00000019089/1-1009 QHGLVEPITQ IKKPWSIQAE MGLPAQKDAW YRYTWDRSLF LTCRRKELQS ENSTTRP00000000199/1-948 QRGLVEPITH VRKPRSIQVE MGLPAQKDAW YRCTWDRSLF LIYRRKELQS bmy_06713T0/1-952 QRGLVEPITH IGKPHSIQVE MGLPAQKDAW YRYTWDRSLF LIYRRKELQS BACU006435/1-1446 QRGLVEPITH IGKPRSIQVE MGLPAQKDAW YRYTWDRSLF LTYRRKELQS 851 900 ENSP00000323184/1-984 IMEELDFSQQ DIDGLEVVGK GWPFSAVTVE DYTVFERSQG SSSEDTAYLG ENSBTAP00000019089/1-1009 IMAELNFSQQ DIDGLEVVGK GRPFSSVMVE DYSVFERSLE SSSEDTVHLD ENSTTRP00000000199/1-948 IMAELDFSQQ DIDGLEVVGK GRPFSTVTVE DYSVFERSQE SSSEDTVHLD bmy_06713T0/1-952 IMAELDFSQQ DIDGLEVVGK GRPFSTVMVE DYSVFERSQE SSSEDTVHLD BACU006435/1-1446 IMAELDFSQQ DIDGLEVVGK GRPFSTVTVE DYSVFERSQE SSSEDTVHLD 901 950 ENSP00000323184/1-984 TLASSSD-VS MPILGPSLLF CGKPACWIRG SNPQDKRQVG IAAHLTFETL ENSBTAP00000019089/1-1009 LLANYPDVVP MPVLGPSLLF CGKPACWIRS SNSEDKRHVG IAVRLTFETL ENSTTRP00000000199/1-948 LLASYPDVVP MPILGPSLLF CGQPACWIRG SNPEDKRHVG IAVRLTFETL bmy_06713T0/1-952 LLANYPDVVP MPILGPSLLF CGKPACWIRG ---------- ---------- BACU006435/1-1446 VLANYPDVVP MPILGPSLLF CGKPACWIRG SNPEDKRHVG IAVRLTFETL 951 1000 ENSP00000323184/1-984 EGEKTSSELT VVNNGTVAIW YDWRRQHQPD TFQDLKKNRM QRFYFDNREG ENSBTAP00000019089/1-1009 EGEKTSSELT VVNNGTVAIW YDWRRRSQWD SFQDLKRNRM QRFYFNNREG ENSTTRP00000000199/1-948 EGEKASSELT VVNNGTVAIW YDWRRRSQLD SFQDLKRNRM QRFYFNNREG bmy_06713T0/1-952 KGEKASSELT VVNNGTVAIW YDWRRRSQLD TFQDLKRNRM QRFYFNNREG BACU006435/1-1446 EGEKASSELT VVNNGTVAVW YDWRRRSQLD SFQDLKRNRM QRFYFNNREG 1001 1050 ENSP00000323184/1-984 VILPGEIKTF TFFFKSLTAG VFREFWEFRT HPTLLGGAIL QVNLHAVSLT ENSBTAP00000019089/1-1009 VILPGKTKNF TFFFKSLNAG IFRECWEFGT HPTLLGGALL QVNLHAVSLA ENSTTRP00000000199/1-948 VILPGETRKF PFFFKSLNAG IFRECWEFGT HPTLLGGALL QVNLHAVSLT bmy_06713T0/1-952 VILPGETRNF TFFFKSLNAG IFRECWEFGT HPTLLGGALL QVNLHAVSLT BACU006435/1-1446 VILPGETRNF TFFFKSLNAG IFRECWEFGT HPTLLGGALL QVNLHAVSLT 1051 1100 ENSP00000323184/1-984 QDVFEDERKV LESK------ LTAHEAVTVV REVLQELLMG VLTPERTPSP ENSBTAP00000019089/1-1009 QDIFRDERKL LESK------ LAAHEAVTVV ENVLQELLRG ILTPERTQSP ENSTTRP00000000199/1-948 QDIFRDERKL LEXX------ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06713T0/1-952 QDIFRDERKL LEVRDLGSWP LWTLEQAGFP RGSHHRGEHA TGAAEGDPDP BACU006435/1-1446 QDIFRDERKL LENK------ LASHEAVTVV ESMLQELLRG ILTPERAQSP 1101 1150 ENSP00000323184/1-984 VDAYLTEEDL FRHRNPPLHY EHQVVQSLHQ LWRQYMTLPA KAEEARPGDK ENSBTAP00000019089/1-1009 VDASVTEEDL FHHRNPQLHY QHQVVQHLHS LWRQYMILPL KAEEARPGEE ENSTTRP00000000199/1-948 XXXXXXXXXX XXXXXXXLHY QHQVVQNLHR LWCQYTVLPP KAEEAGPGEE bmy_06713T0/1-952 -GACTVTCGR LSHRGGLLHY QHQVVQNLHR LWCQYAILPP KAEEARPGEE BACU006435/1-1446 VDACLTEEDL FHRRNPRLHY QHQVVQNLHR LWCQYTILPP KAEEARPGEE 1151 1200 ENSP00000323184/1-984 EHVSPIAT-- -------EKA SVNAELLPRF RSPISETQVP RPENEALRES ENSBTAP00000019089/1-1009 GHLSPRAQAA ATPSAYSEET SMKIESSAHL KSPTLDPQLP RQESEAIKDS ENSTTRP00000000199/1-948 EHLSPRAG-- -------EAA SMKVGSSVHL KSPALDPQPP RQESEALRDS bmy_06713T0/1-952 EHLSPRAPAA AAPSAYWEEA SMKVESSAHL KSPALDPRPP RQESEALRDS BACU006435/1-1446 EHLSPRAQAA AAPSAYWEEA SMKAESSAHL KSPALDSRPP RQESEALRDS 1201 1250 ENSP00000323184/1-984 ----GSQKAR VGTKSPQRKS IMEEILVEES PDVDSTKSPW EPDGLPLLEW ENSBTAP00000019089/1-1009 QDHVGSQKTG LGVRPSQRKS IMEEILVEGS PDLESIRSPW ELDGLPLPEW ENSTTRP00000000199/1-948 RHPVGSQKTG LG---SQQKS IME---VEGS PDLQSVRSSQ ELDGLPPPEW bmy_06713T0/1-952 RDPVGSQKSG LG---SQRKS IMEEILVEGS PDLESVRSSR ELDGLPPPEW BACU006435/1-1446 RDPVGSQKSG PG---SQRKS IMEEILVEAS PDLESVRSSR ELDGLPPPEW 1251 1300 ENSP00000323184/1-984 NLCLEDFRKA VMVLPDENHR EDALMRLNKA ALELCQKPRP LQSNLLHQMC ENSBTAP00000019089/1-1009 NLCLEDFRKA VMALPEENQR EDALIRLNKA ALELCQEPRP LHPDFLYQMC ENSTTRP00000000199/1-948 NLCLEDFRKV VVALPEENQR EDALIRLNKA ALELCQEPRP LQSDLLYQMC bmy_06713T0/1-952 NLCLEDFRKV VMALPEENQR EDALIRLNKA ALELCQEPRP LQSDLLYQMC BACU006435/1-1446 NLCLEDFRKV VMALPEENQR EDALIRLNIA ALELCQEPRP LQSDFLYQMC 1301 1350 ENSP00000323184/1-984 LQLWRDVIDS LVGHSMWLRS VLGLPEKETI YLNVPEEQDQ KSPPIMEVKV ENSBTAP00000019089/1-1009 LQLWRDLIDS LVSHSLWLRA LLGLPEKETI YLDMPEEQDR KSPPVTEVKV ENSTTRP00000000199/1-948 LQLWRDVIDS LVSHSLWLRA LLGLPEKETI YLHVPEAPDR KSPPVTEVKV bmy_06713T0/1-952 LQLWRDVIDS LVSHSLWLRA LLGLPEKETI YLHMPEEQDQ KSPPVTEVKV BACU006435/1-1446 LQLWRDVIDS LVSHSLWLRA LLGLPEKEAV YLHTPEEQDR KSPPVTEVKV 1351 1400 ENSP00000323184/1-984 PVGKAGKEER KGAAQEKKQL GIKDKEDKKG AKL-LGKE-- ---------- ENSBTAP00000019089/1-1009 TSGKVGKEDR KGASQEKKQF GIRDKEDKKG PRLSPGKE-- ---------- ENSTTRP00000000199/1-948 TSGRVGKEDR KGPSQEKKQL GIKDKDDKKG AKLPPGKE-- ---------- bmy_06713T0/1-952 TSGRVGKEDR KGPSQEKKH- ---------- ---------- ---------- BACU006435/1-1446 TSGRVGKEDR KGPSQEKKQL GIKDKDDKKG AKLPPGKEAG ATEGWACLCL 1401 1450 ENSP00000323184/1-984 ---DRPNSKK HKAKDDKKVI KSASQDRFSL EDPTPDIILS SQEPIDPLVM ENSBTAP00000019089/1-1009 ---DRLNSKK HKTKDDKKPV KSLSRDGLSL DEPAPDSIIP SQEPIDPLVM ENSTTRP00000000199/1-948 ---DHLNSKK HKAKDDKKPM KSTSRDRLPL EDPAPDIIIP AQEPIDPLVM bmy_06713T0/1-952 --------KK HKAKDDKKPM KSTSRDRLSL EDPAPDSIIL SQEPIDPLVM BACU006435/1-1446 SKQDRLNSKK HKAKDDKKPM KSTSRDRLSL EDPAPDSIIL SQEPIDPLVM 1451 1500 ENSP00000323184/1-984 GKYTQSLHSE VRGLLDTLVT DLMVLADELS PIKNVEEALR LCR ENSBTAP00000019089/1-1009 EKYTHRLHTE VCGLLDALVT DLLALADDLH PQKNAEEPLR LCP ENSTTRP00000000199/1-948 EKYTQRLHTE VYGLLDALVT DLLVLADELS PKENVKEPLR LCT bmy_06713T0/1-952 EKYTQRLHTE VYGLLDALVT DLLVLADELS PKENVKEPLR LCT BACU006435/1-1446 EKYTQRLHTE VYGLLDALVT DLLVLADELS PKENVKEPLR LCT