KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:32 2014 Check: 00 .. Name: bmy_11964T0/1-355 Len: 650 Check: 2330 Weight: 1.00 Name: ENSP00000455169/1-525 Len: 650 Check: 6671 Weight: 1.00 Name: ENSBTAP00000019107/1-526 Len: 650 Check: 6700 Weight: 1.00 Name: BACU019706/1-495 Len: 650 Check: 2197 Weight: 1.00 Name: ENSTTRP00000009832/1-525 Len: 650 Check: 6421 Weight: 1.00 // 1 50 bmy_11964T0/1-355 MALEQLYSVL KGKRPELRTA PPAGEAGVFA SLPGAGLPTR PFVWRERIAE ENSP00000455169/1-525 MALERLCSVL K--------- ---------- ---------- ---------- ENSBTAP00000019107/1-526 IQLFNLSSLI S--------- ---------- ---------- ---------- BACU019706/1-495 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009832/1-525 MALEQLCSVL K--------- ---------- ---------- ---------- 51 100 bmy_11964T0/1-355 PPLPPGSTRS PSASPQPSAC RGRGTGERIG TRRLGRPSEL CPRASSSEFR ENSP00000455169/1-525 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019107/1-526 ---------- ---------- ---------- ---------- ---------- BACU019706/1-495 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009832/1-525 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_11964T0/1-355 TSLCKVVGFV GSYQKQLFNI YIIMDITYQK PSLEYYVLLI TILVVEGIAV ENSP00000455169/1-525 ---------- ---------- ---------- ------VLLI TVLVVEGIAV ENSBTAP00000019107/1-526 ---------- ---------- ---------- -----LVLLV TVLVVEGIAV BACU019706/1-495 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009832/1-525 ---------- ---------- ---------- ------VLLI TILVVEGIAV 151 200 bmy_11964T0/1-355 AQKTQDGQNI GIKHIPATQC GIWVRTSNGG HFASPNYPDS YPPNKECIYI ENSP00000455169/1-525 AQKTQDGQNI GIKHIPATQC GIWVRTSNGG HFASPNYPDS YPPNKECIYI ENSBTAP00000019107/1-526 AQKTQDGQNI GMKHVPATQC GIWVRTSNGG HFASPNYPDS YPPNKECIYI BACU019706/1-495 -----DGQNI GIKHIPATQC GIWVRTSNGG HFASPNYPDS YPPNKECIYI ENSTTRP00000009832/1-525 AQKTQDGQNI GIKHIPATQC GIWVRTSNGG HFASPNYPDS YPPNKECIYI 201 250 bmy_11964T0/1-355 LEAAPRQRIE LTFDEHYYIE PSFECRFDHL EVRDGPFGFS PLVDRYCGVK ENSP00000455169/1-525 LEAAPRQRIE LTFDEHYYIE PSFECRFDHL EVRDGPFGFS PLIDRYCGVK ENSBTAP00000019107/1-526 LEAAPRQRIE LTFDEHYYIE PSFECRFDHL EIRDGPFGFS PLIDRYCGVK BACU019706/1-495 LEAAPRQRIE LTFDEHYYIE PSFECRFDHL EVRDGPFGFS PLVDRYCGVK ENSTTRP00000009832/1-525 LEAAPRQRIE LTFDEHYYIE PSFECRFDNL EVRDGPFGFS PLVDRYCGVK 251 300 bmy_11964T0/1-355 SPPLIRSTGR FMWIKFSSDE ELEGLGFRAK YSFIPDPDFT YLGGILNPIP ENSP00000455169/1-525 SPPLIRSTGR FMWIKFSSDE ELEGLGFRAK YSFIPDPDFT YLGGILNPIP ENSBTAP00000019107/1-526 SPPLIRSTGR FMWIKFSSDE ELEGLGFRAK YSFIPDPDFT YLGGILNPIP BACU019706/1-495 SPPLLRSTGR FMWIKFSSDE ELEGLGFRAK YSFIPGSSNP LRASASTNIT ENSTTRP00000009832/1-525 SPPLIRSTGR FMWIKFSSDE ELEGLGFRAK YSFIPXXXXX XXXXXXXXXX 301 350 bmy_11964T0/1-355 DCQFELSGAD GIIRSSQVEQ EEKTKPGQAV DCIWTIKATP KAKVVL---- ENSP00000455169/1-525 DCQFELSGAD GIVRSSQVEQ EEKTKPGQAV DCIWTIKATP KAKIYLRFLD ENSBTAP00000019107/1-526 DCQFELSGAD GIVRSSQVEQ EEKTKPGQAV DCIWTIKATP KAKIYLRFLD BACU019706/1-495 SSSENFIYLK DTNFSGFPGG AVVENLPANA GDMALFFFVL MLQIYLRFLD ENSTTRP00000009832/1-525 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXIYLRFLD 351 400 bmy_11964T0/1-355 ---------- ---------- -SMQSL---- ---------- ---------- ENSP00000455169/1-525 YQMEHSNECK RNFVAVYDGS SSIENLKAKF CSTVANDVML KTGIGVIRMW ENSBTAP00000019107/1-526 YQMEHSNECK RNFVAVYDGS SSIENLKAKF CSTVANDVML KTGVGVIRMW BACU019706/1-495 YQMEHSNECK RNFVAVYDGS SSIENLKAKF CSTVANDVML KTGVGVIRMW ENSTTRP00000009832/1-525 YQMEHSNECK RNFVAVYDGS SSIENLKAKF CSTVANDVML KTGVGVIRMW 401 450 bmy_11964T0/1-355 ---------- ---------- ---------- ---------- ---------- ENSP00000455169/1-525 ADEGSRLSRF RMLFTSFVEP PCTSSTFFCH SNMCINNSLV CNGVQNCAYP ENSBTAP00000019107/1-526 ADEGSRLSRF RMLFTSFVEP PCTGSTFFCH SNMCINNSLV CNGIQNCAYP BACU019706/1-495 ADEGSRLSRF RMLFTSFVEP PCTGSTFFCH SNMCINNSLV CNGVQNCAYP ENSTTRP00000009832/1-525 ADEGSRLSRF RMLFTSFVEP PCTGSTFFCH SNMCINNSLV CNGVQNCAYP 451 500 bmy_11964T0/1-355 ---------- ---------- ---------- ---------- ---------- ENSP00000455169/1-525 WDENHCKEKK KAGVFEQITK THGTIIGITS GIVLVLLIIS ILVQVKQPRK ENSBTAP00000019107/1-526 WDENHCKEKK KAGLFEQITK THGTIIGITS GIVLVLLIIS ILVQVKQPRK BACU019706/1-495 WDENHCKEKK KAGLFEQITK THGTIIGITS GIVVVLLIIS ILVQVKQPRK ENSTTRP00000009832/1-525 WDENHCKEKK KAGLFEQITK THGTIIGITS GIVLVLLIIS ILVQVKQPRK 501 550 bmy_11964T0/1-355 ---------- ---------- ---------- ---------- ---------L ENSP00000455169/1-525 KVMACKTAFN KTGFQEVFDP PHYELFSLRD KEISADLADL SEELDNYQKM ENSBTAP00000019107/1-526 KVMACKTAFN KTGFQEVFDP PHYELFSLRD KEMSADLADL SEELDSYQKT BACU019706/1-495 KVMACKTAFN KTGFQEEFDP PHYELFSLRD KEMSADLADL SEELDSYQKA ENSTTRP00000009832/1-525 KVMACKTAFN KTGFQEVFDP PHYELFSLRD KEMSADLADL SEELDSYQKA 551 600 bmy_11964T0/1-355 RRT------- ---------- ---------- ---------- ---------- ENSP00000455169/1-525 RRSSTASRCI HDHHCGSQAS SVKQSRTNLS SMELPFRNDF AQPQPMKTFN ENSBTAP00000019107/1-526 RRSSTASRCI HDHHCGSQAP SAKQSRTNLS SMELPFRNDF AQPQPMKTFN BACU019706/1-495 RCSSTASRCI HDHHCGSQAP SIKQSRTNLT SMELPFRNDF AQPQPMKTFN ENSTTRP00000009832/1-525 RCSSTASRCI HDHHCGSQAP SIKQSRTNLS SMELPFRNDF AQPQPMKTFN 601 650 bmy_11964T0/1-355 ---------- ---------- ---------- ---------- ---------- ENSP00000455169/1-525 STFKKSSYTF KQGHECPEQA LEDRVMEEIP CEIYVRGRED SAQASISIDF ENSBTAP00000019107/1-526 STFKKSSYTF KQAHECPEQA LEDRVMEEIP CEIYVRGRED SAQASISIDF BACU019706/1-495 STFKKSSYTF KQAHECPEQA LEDRVMEEIP CEIYVRGRED SAQASISIDF ENSTTRP00000009832/1-525 STFKKSSYTF KQAHECPEQA LEDRVMEEIP CEIYVRGRED SAQASISIDF