KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:06:43 2014 Check: 00 .. Name: bmy_00941T0/1-446 Len: 754 Check: 8076 Weight: 1.00 Name: ENSP00000240123/1-671 Len: 754 Check: 4867 Weight: 1.00 Name: ENSTTRP00000012096/1-627 Len: 754 Check: 1448 Weight: 1.00 Name: ENSBTAP00000019149/1-712 Len: 754 Check: 3434 Weight: 1.00 // 1 50 bmy_00941T0/1-446 MARIPGVGRL SASPSLENKE EHERDVALNR EDPDRGHAEE QLVHPGSPGL ENSP00000240123/1-671 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012096/1-627 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019149/1-712 MARIPGVGRS SASPSLENKE EHERDVALNH QDPDRGHAEE QLSSP----- 51 100 bmy_00941T0/1-446 DPSMQAPARS FPAALSLDDF IPSHLRAHVG SSPRGTRVPV IRNGGSNTLN ENSP00000240123/1-671 ---MQGPPRS LRAGLSLDDF IPGHLQSHIG SSSRGTRVPV IRNGGSNTLN ENSTTRP00000012096/1-627 ---MQASARS LPAALSLDDF IPSHLRAHVG SSPRGTRVPV IRNGGSNTLN ENSBTAP00000019149/1-712 DPSMQAPPYS LPAGLSLDDF IPGHLLAHVG SSTRGTRVPV IRNGGSNTLN 101 150 bmy_00941T0/1-446 FQFHDPAPRT VCNGYFPPRR DASRHPDPAW YQTWPGPGSR PSGNQKTPAS ENSP00000240123/1-671 FQFHDPAPRT VCNGGYTPRR DASQHPDPAW YQTWPGPGSK PSASTKIPAS ENSTTRP00000012096/1-627 FQFHDPAPRT VCNGYFPPRR DASRHPDPAW YQTWPGPGSR PSGNQKTPAS ENSBTAP00000019149/1-712 FQFHDPAPRT VCNGYFQPRR DASRHPDPAW YQTWPGPGSR PPGNQKTPAS 151 200 bmy_00941T0/1-446 QHPQNWSATW TKDSKRLNKR WVKYEGIGPV DESGMPIAPR SSVDSPRDWY ENSP00000240123/1-671 QHTQNWSATW TKDSKRRDKR WVKYEGIGPV DESGMPIAPR SSVDRPRDWY ENSTTRP00000012096/1-627 QHLQNWSATW TKDSKRLNKR WVKYEGIGPV DESGMPIAPR SSVDSPRDWY ENSBTAP00000019149/1-712 QHSQKWSATW TKDSKRRDKR WVKYEGIGPV DESGMPIAPR SSVDSPRDWY 201 250 bmy_00941T0/1-446 RRMFQQIHRK MPGETPFQRP LSAYVGLDPW GLGNLQLDRT FEEAPKVASS ENSP00000240123/1-671 RRMFQQIHRK MP-------- ---------- ---DLQLDWT FEEPPR---- ENSTTRP00000012096/1-627 RRMFQQIHRK MP-------- ---------- ---DLQLDRT FKEAPK---- ENSBTAP00000019149/1-712 RRMFKQIHRK MP-------- ---------- ---------- ------VDSS 251 300 bmy_00941T0/1-446 CDTSADSRHP GPQQRPAARP DLTSSVSGRS WDVSEEFLRN TFNRNAGASS ENSP00000240123/1-671 -----DPRHL GAQQRPAHRP GPATSSSGRS WDHSEELPRS TFNYRPGAFS ENSTTRP00000012096/1-627 -----XXXXX XXXXXXXXXX XXXXXXXXRS WDISEEFLRN TFNCNAGASS ENSBTAP00000019149/1-712 CATSADSRHP GPQQRPPARP NQMSPLSGRS WDVSEESLRS TFSCSPGAPS 301 350 bmy_00941T0/1-446 SLHQTPNQVS RHREKADNVW TEESWNQFLQ ELETGKKPKK PLVDDPVEKP ENSP00000240123/1-671 TVLQPSNQVL RRREKVDNVW TEESWNQFLQ ELETGQRPKK PLVDDPGEKP ENSTTRP00000012096/1-627 SLHQTPNQVS RHRDKADNVW TEESWNQFLQ ELETGKKPKK PLVDDPVEKP ENSBTAP00000019149/1-712 SLHQTSKQVL RRQEKADNVW TEESWNQFLQ ELETGQKPKK PLVDDPVEKP 351 400 bmy_00941T0/1-446 PQPIEVLLER ELAKLSAELD KDLRAIETGQ PSPKV----- -------PA- ENSP00000240123/1-671 SQPIEVLLER ELAELSAELD KDLRAIETRL PSPKSSPAPR RAPEQRPPAG ENSTTRP00000012096/1-627 SQPIEVLLER ELAKLSAELD KDLRAIETGQ PSPKSSQAPR RSREPRPPA- ENSBTAP00000019149/1-712 SQPIEVLLER ELAKLSAELD KDLRAIETGQ PSPKSSQAPR RSREPRPPAR 401 450 bmy_00941T0/1-446 ---------- ---------- ---------- ---------- --------SQ ENSP00000240123/1-671 PASAWSSSYP HAPYLGSARS LSPHKMADGG SPFLGRRDFV YPSSTRDPSA ENSTTRP00000012096/1-627 ---------- ---------- ---------- -PF------- ----TRDPSA ENSBTAP00000019149/1-712 PASAWSSSSP NALYPSS--S LSPHRMADGG SPFLGRRDFV YPSSARDPSA 451 500 bmy_00941T0/1-446 SPPGG----R QEPGAAAAGL GWEAQADERR RL-------- ---------- ENSP00000240123/1-671 SNGGGSPARR EEKKRKAARL KFDFQAQSPK ELTLQKGDIV YIHKEVDKNW ENSTTRP00000012096/1-627 SEPGGSPARK EEKKRKAARL KFDFQAQSPK ELTLKKGDIV YIHKEVDKNW ENSBTAP00000019149/1-712 SDPGGSPARK EEKKRKAARL KFDFQAQSPK ELTLKKGDIV YIHKEVDKNW 501 550 bmy_00941T0/1-446 ---QPHSR-- ---------- ---------- -P-------- ---------- ENSP00000240123/1-671 LEGEHHGRLG IFPANYVEVL PADEIPKPIK PPTYQVLEYG EAVAQYTFKG ENSTTRP00000012096/1-627 LEGEHHGRLG IFPANYVEVL PADEIPKPIK PPTYQVLEYG EAVAQYNFKG ENSBTAP00000019149/1-712 LEGEHHGRLG IFPANYVEVL PADEIPKPIK PPTYQVLEYG EAVAQYNFKG 551 600 bmy_00941T0/1-446 ---------- ---------- ---W------ --ETSSLFAL SFL------- ENSP00000240123/1-671 DLEVELSFRK GEHICLIRKV NENWYEGRIT GTGRQGIFPA SYVQVSREPR ENSTTRP00000012096/1-627 DLEVELSFRK GERICLIRKV NEHWYEGRIS GTGRQGIFPA SYVQVTREPR ENSBTAP00000019149/1-712 DLEVELSFRK GERICLIRKV NEHWYEGRIS GTGRQGIFPA SYVQVTREPR 601 650 bmy_00941T0/1-446 ---------- --------KC RAFTVPSDP- ---------- ---------- ENSP00000240123/1-671 LRLCDDGPQL PTSPRLTAAA RSARHPSSPS ALRSPADPID LGGQTSPRRT ENSTTRP00000012096/1-627 IRVCDDSPQL PASPRLT-TA RLAHHPSSPL MPRSPFDPTD WGGRTSPRRT ENSBTAP00000019149/1-712 VRLCDDGPQL PASPRLP-TA RLVCRPSSPL TPRSPADPTD WGVQTSPRRT 651 700 bmy_00941T0/1-446 ---------- ---------- ---------- ---------- ---------- ENSP00000240123/1-671 GFSFPTQEPR PQTQNLGTPG PALSHSRGPS HPLDLGTSSP NTSQIHWTPY ENSTTRP00000012096/1-627 GFSFPTQEPR PQTQSLSTLG SALSHPGGSS RPLELGTSPP NTTQIHWTLY ENSBTAP00000019149/1-712 GFSLPPQESR PQTQSLSTPR SALSHPGGSS HPPDLGTSSS TTSEIHWTPY 701 750 bmy_00941T0/1-446 ---------- ---------- ---------- ---------- ---------- ENSP00000240123/1-671 RAMYQYRPQN EDELELREGD RVDVMQQCDD GWFVGVSRRT QKFGTFPGNY ENSTTRP00000012096/1-627 RAMYQYRPQN EDELELREGD WVDVMQQCDD GWFVGVSRRT QKFGTFPGNY ENSBTAP00000019149/1-712 RAMYQYRPQN EDELELREGD RVDVMQQCDD GWFVGVSRRT QKFGTFPGNY 751 800 bmy_00941T0/1-446 ---- ENSP00000240123/1-671 VAPV ENSTTRP00000012096/1-627 VAPV ENSBTAP00000019149/1-712 VAPV