KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:45 2014 Check: 00 .. Name: ENSP00000372035/1-1088 Len: 1214 Check: 1197 Weight: 1.00 Name: ENSBTAP00000019161/1-1086 Len: 1214 Check: 7473 Weight: 1.00 Name: ENSTTRP00000009347/1-992 Len: 1214 Check: 6365 Weight: 1.00 Name: bmy_09219T0/1-935 Len: 1214 Check: 5975 Weight: 1.00 Name: BACU000163/1-745 Len: 1214 Check: 5104 Weight: 1.00 // 1 50 ENSP00000372035/1-1088 MRPKTFPATT YSGNSRQRLQ EIREGLKQPS KSSVQGLPAG PNSDTSLDA- ENSBTAP00000019161/1-1086 MRPKTFPATT YSGNSRQRLQ EIREGLKQPP V--------G PGSDAALDAK ENSTTRP00000009347/1-992 MRPKTFPATT YSGNSRQRLQ EIREGLKQPP KTPAPGPPAG PGSDAALDA- bmy_09219T0/1-935 MRPKTFPATT YSGNSRQRLQ EIREGLKQPP KTPAPGPPAG PGSDAALDA- BACU000163/1-745 MRPKTFPATT YSGNSRQRLQ EIREGLKQPP KTPAPGPPAG PGSDAALDA- 51 100 ENSP00000372035/1-1088 ----KVLGSK DATRQQQQMR ATPKFGPYQK ALREIRYSLL PFANESGTSA ENSBTAP00000019161/1-1086 VLGGKVLGGK DTAR-QQQMR SAPKFGPYQK ALREIRYSLL PFANESGTSA ENSTTRP00000009347/1-992 ----KALGGK DAARQQQQTR TAPKFGPYQK ALREIRYSLL PFANESGPSA bmy_09219T0/1-935 ----KALGGK DAAR-QQQTR TAPKFGPYQK ALREIRYSLL PFANESGPSA BACU000163/1-745 ----KALGGK DAAR-QQQTR TAPKFGPYQK ALREIRYSLL PFANESGPSA 101 150 ENSP00000372035/1-1088 AAEVNRQMLQ ELVNAGCDQE MAGRALKQTG SRSIEAALEY ISKMGYLDPR ENSBTAP00000019161/1-1086 ATEVNRQMLQ ELVDAGCDQE MAGRALKQTG SRSIEAALEF ISKMGYLEPG ENSTTRP00000009347/1-992 AAEVNRQML- -LLDAGCDQE MAGRALKQTG SRSIEAALEF ISKMGYLEPG bmy_09219T0/1-935 AAEVNRQMLQ ELVDAGCDQE MAGRALKQTG SRSIEAALEF ISKMGYLEPG BACU000163/1-745 AAEVNRQMLQ ELVDAGCDQE MAGRALKQTG SRSIEAALEF ISKMGYLEPG 151 200 ENSP00000372035/1-1088 NEQIVRVIKQ TSP------- ---------- ---------- ---------- ENSBTAP00000019161/1-1086 KEQIVRVVKQ TSP------- ---------- ---------- ---------- ENSTTRP00000009347/1-992 KEQIVRVVKQ TSP------- ---------- ---------- ---------- bmy_09219T0/1-935 KEQIVRVVKQ TSPVSFAVPS AGSTAAEGLG SARCSAGASS DRQGTAFGLG BACU000163/1-745 KEQIVRVVKQ TSP------- ---------- ---------- ---------- 201 250 ENSP00000372035/1-1088 ---------- ---------- ---------- -----GKGLM PTPVTRRPSF ENSBTAP00000019161/1-1086 ---------- -DLWGSLKGR LISLILKHTC FPLC-GLGEP AARWQVAPEY ENSTTRP00000009347/1-992 ---------- ---------- ---------- -----GKGLA PASVPRRPSF bmy_09219T0/1-935 ARRCPRGRHW RQGPSQAFGR GVAVPRRQPA VPSSAGKGLA PASVPRRPSF BACU000163/1-745 ---------- ---------- ---------- -----GKGLA PASVPRRPSF 251 300 ENSP00000372035/1-1088 ----EGTGDS FASYHQLSGT PYEGPSFGAD GPTALEEMPR P--------- ENSBTAP00000019161/1-1086 GASGTGVGKP PPPYPRGG-- --REPSPTST APHAPGEGQS PQHPCLLVSG ENSTTRP00000009347/1-992 ----EGAGDP FPPYGQVS-- ---GPAF--E GPAALDEAPR Q--------- bmy_09219T0/1-935 ----EGAGDP FPPYAQVS-- ---GPAF--E GPAALEEAPR Q--------- BACU000163/1-745 ----EGAGDP FPPYAQ---- ---------- ---------- ---------- 301 350 ENSP00000372035/1-1088 ----YVDYLF PGVGPHGPGH QHQHPPKGYG ASVEAAGAHF --------PL ENSBTAP00000019161/1-1086 CFSSWVEQME PFGGPEAPGG A-ISTSRPLG SRG-LCGSSS PSPSPAGSPG ENSTTRP00000009347/1-992 ----YPDFLF AAVGPH---- --VHPPKGYA AAGEAAGMSL --------PL bmy_09219T0/1-935 ----YPDFLF AAVGPHCR-- --PHPPKGYA AAGEAAGMSL PGPGGPAPPL BACU000163/1-745 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000372035/1-1088 QGAHYGRPHL LVPGEPLGYG VQRSPSFQSK T---PPETGG YASLPTKGQG ENSBTAP00000019161/1-1086 AGASSSTGGL CRGSCGAG-- -RRVPDWRRG AFCPRPSNAA SVSARREGPG ENSTTRP00000009347/1-992 QGPHYRAP-L LVPGEPLAYG VQRSPSFQSK T---PPEVGG YAGLAAKGPG bmy_09219T0/1-935 QGPHYRAP-L LVPGEPLGYG VQRSPSFQSK T---PPEVGG YAGLAAKGPA BACU000163/1-745 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000372035/1-1088 GPPGA----- ---GLAFPPP AAGLYVPHPH HKQAGPAAHQ LHVLGSRSQV ENSBTAP00000019161/1-1086 AGPRATEAEL RSTGRAFPAL HAGGRAGFRG PRRPGGSASP LPGLPLRRRR ENSTTRP00000009347/1-992 ARACA----- ---GLAFPPR ARAAYAPHPH PKQP----HP VNAGGLGAPW bmy_09219T0/1-935 VQVQG----- ---------- ---------- ---------- ---------- BACU000163/1-745 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000372035/1-1088 FASDSPP--- ---QSLLTPS RNSLNVDLYE LGSTSVQQWP AATLARRDSL ENSBTAP00000019161/1-1086 ASLSSAPAQG LRGRRGAAPA RTGLGAERFE PGA---PAWP GAGLARRDSL ENSTTRP00000009347/1-992 FVGDSPR--- ---RVLATPS RTGLGAKR-E PSGLPGPQWP TPGWXXX--- bmy_09219T0/1-935 ---------- ---------- ---------- ---------- ---------- BACU000163/1-745 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000372035/1-1088 QKPGLEAPPR AHVAFRPDCP VPSRTNSFNS HQPRPGPPGK AEPSLPAPNT ENSBTAP00000019161/1-1086 PKPG------ ---------- ---------- ----PSRTGS FSGAAAPPNA ENSTTRP00000009347/1-992 ---------- ---------- ---------- ---------- ---------- bmy_09219T0/1-935 ---------- ---------- ---------- ---------- ---------- BACU000163/1-745 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000372035/1-1088 VTAVTAAHIL HPVKSVRVLR PEPQTAVGPS HPAWVPAPAP APAPAPAPAA ENSBTAP00000019161/1-1086 VTAVTAARIL HPVRSVRVLR PEPQTAVGPS HPAWAPAPPP ---------- ENSTTRP00000009347/1-992 -FAVTAAHIL HAVKSVRVMR PEPQTAVGPS HPAWVPPPGP --------AL bmy_09219T0/1-935 ---------- ---------- ---------- ---------- ---------- BACU000163/1-745 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000372035/1-1088 EGLDAKEEHA LALGGAGAFP LDVEYGGPDR RCPPPPYPKH LLL-RSKSEQ ENSBTAP00000019161/1-1086 DGPEPAEELA ---------- -----GGAEA RGRPPPYPRH LLRPQARAEP ENSTTRP00000009347/1-992 EGLEPQDEHP PAPGGAG--- ---------- -GRPPPYPRH LLR---RPEQ bmy_09219T0/1-935 ---------- ---------- ---------- ---------- ------RAEQ BACU000163/1-745 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000372035/1-1088 YDLDSLCAGM EQSLRAG--P NEPE---GGD KSRKSAKGDK GGKDKKQIQT ENSBTAP00000019161/1-1086 LDVDGLCAGL QQGLRGGRAA ESPD---GSP TSPGATKADR AGRDRKQIQT ENSTTRP00000009347/1-992 YDVDGLCAGL QQGLRGSRAA EPPD---GSP RSPRGAKGEK AGKDRKQIQT bmy_09219T0/1-935 YDVDGLCAGL QQGLRGSRAA EPPDGSPGSP RSPRGAKGEK AGKDRKQIQT BACU000163/1-745 YDVDGLCAGL QQGLRGSRAA EPPD---GSP RSPRGAKGEK AGKDRKQIQT 701 750 ENSP00000372035/1-1088 SPVPVRKNSR DEEKRESRIK SYSPYAFKFF MEQHVENVIK TYQQKVNRRL ENSBTAP00000019161/1-1086 SPVPVRRGGR DEDRRESRIK SYSPSAFKFF MEQHVENVLK THQQKVARRL ENSTTRP00000009347/1-992 SPVPVRRGCR DEEKRESRIK SYSPSAFKFF MEQHVENVLK TYQQKVARRL bmy_09219T0/1-935 SPVPVRKGCR DEEKRESRIK SYSPSAFKFF MEQHVENVLK TYQQKVARRL BACU000163/1-745 SPVPVRRGCR DEEKRESRIK SYSPSAFKFF MEQHVENVLK TYQQKVARRL 751 800 ENSP00000372035/1-1088 QLEQEMAKAG LCEAEQEQMR KILYQKESNY NRLKRAKMDK SMFVKIKTLG ENSBTAP00000019161/1-1086 QLEQEMAKAG LCEAEQEQMR KILYQKESNY NRLKRAKMDK SMFVKVKTLG ENSTTRP00000009347/1-992 QLEQEMAKAG LCEAEQEQMR KILYQKESNY NRLKRAKMDK SMFVKVKTLG bmy_09219T0/1-935 QLEQEMAKAG LCEAEQEQMR KILYQKESNY NRLKRAKMDK SMFVKVKTLG BACU000163/1-745 QLEQEMAKAG LCEAEQEQMR KILYQKESNY NRLKRAKMDK SMFVKVKTLG 801 850 ENSP00000372035/1-1088 IGAFGEVCLA CKVDTHALYA MKTLRKKDVL NRNQVAHVKA ERDILAEADN ENSBTAP00000019161/1-1086 VGAFGEVCLA CKVDTHALYA MKTLRKKDVL NRNQVAHVKA ERDILAEADN ENSTTRP00000009347/1-992 VGAFGEVCLA CKVDTHALYA MKTLRKKDVL NRNQVAHVKA ERDILAEADN bmy_09219T0/1-935 VGAFGEVCLA CKVDTHALYA MKTLRKKDVL NRNQVAHVKA ERDILAEADN BACU000163/1-745 VGAFGEVCLA CKVDTHALYA MKTLRKKDVL NRNQVAHVKA ERDILAEADN 851 900 ENSP00000372035/1-1088 EWVVKLYYSF QDKDSLYFVM DYIPGGDMMS LLIRMEVFPE HLARFYIAEL ENSBTAP00000019161/1-1086 EWVVKLYYSF QDKDSLYFVM DYIPGGDMMS LLIRMEVFPE HLARFYIAEL ENSTTRP00000009347/1-992 EWVVKLYYSF QDKDSLYFVM DYIPGGDMMS LLIRMEVFPE HLARFYIAEL bmy_09219T0/1-935 EWVVKLYYSF QDKDSLYFVM DYIPGGDMMS LLVRMDVFPE QLARFYVAEL BACU000163/1-745 EWVVKLYYSF QDKDSLYFVM DYIPGGDMMS LLVRMDVFPE QLARFYVAEL 901 950 ENSP00000372035/1-1088 TLAIESVHKM GFIHRDIKPD NILIDLDGHI KLTDFGLCTG FRWTHNSKYY ENSBTAP00000019161/1-1086 TLAVESVHRM GFIHRDIKPD NILIDLDGHI KLTDFGLCTG FRWTHNSKYY ENSTTRP00000009347/1-992 TLAIESVHKM GFIHRDIKPD NILIDLDGHI KLTDFGLCTG FRWTHNSKYY bmy_09219T0/1-935 TLAIESVHRM GFIHRDIKPD NILIDLDGHI KLTDFGLCTG FRWTHNSKYY BACU000163/1-745 TLAIESVHRM GFIHRDIKPD NILIDLDGHI KLTDFGLCTG FRWTHNSKYY 951 1000 ENSP00000372035/1-1088 QKGSHVRQDS MEPSDLWDDV SNCRCGDRLK TLEQRARKQH QRCLAHSLVG ENSBTAP00000019161/1-1086 QKGSHSRQDS MEPSDLWDDV SNCRCGDRLK TLEQRARRQH QRCLAHSLVG ENSTTRP00000009347/1-992 QKGSHTRQDS MEPSDLWDDV SNCRCGDQLK TLEQRARRQH QRCLAHSLVG bmy_09219T0/1-935 QKGSHSRQDS MEPSDLWDDV SNCRCGDRLK TLEQRTRRQH QRCLAHSLVG BACU000163/1-745 QKGSHSRQDS MEPSDLWDDV SNCRCGDRLK TLEQRTRRQH QRCLAHSLVG 1001 1050 ENSP00000372035/1-1088 TPNYIAPEVL LRKGYTQLCD WWSVGVILFE MLVGQPPFLA PTPTETQLKV ENSBTAP00000019161/1-1086 TPNYIAPEVL LRKGYTQLCD WWSVGVILFE MLVGQPPFLA PTPTETQLKV ENSTTRP00000009347/1-992 TPNYIAPEVL LRKGYTQLCD WWSVGVILFE MLVGQPPFLA PTPTETQLKV bmy_09219T0/1-935 TPNYIAPEVL LRKGYTQLCD WWSVGVILFE MLVGQPPFLA PTPTETQLKV BACU000163/1-745 TPNYIAPEVL LRKGYTQLCD WWSVGVILFE MLVGQPPFLA PTPTETQLKV 1051 1100 ENSP00000372035/1-1088 INWENTLHIP AQVKLSPEAR DLITKLCCSA DHRLGRNGAD DLKAHPFFSA ENSBTAP00000019161/1-1086 INWESTLHIP AQVELSPEAR DLIAKLCCAA EHRLGRNGAD DLKAHPFLGA ENSTTRP00000009347/1-992 INWESTLHIP AQVELSPEAR DLIAKLCCAA EHRLGRNGAD DLKAHPFLGA bmy_09219T0/1-935 INWESTLHVP AQAELSPEAR DLITKLCCSA ERRLGRDGAD DLKAHPFLGA BACU000163/1-745 INWESTLHIP AQVELSPEAR DLIAKLCCSA EHRLGRNGAD DLKAHPFLGA 1101 1150 ENSP00000372035/1-1088 IDFSSDIRKQ PAPYVPTISH PMDTSNFDPV DEESPWNDAS EGSTKAWDTL ENSBTAP00000019161/1-1086 IDFSSDIRRQ PAPYVPTISH PMDTSNFDPV DEEGPWQDGS EDSSKAWDAL ENSTTRP00000009347/1-992 IDFSSDIRRQ PAPYVPTISH PMDTSNFDPV DEEGPWQDGS EDSSKAWDAL bmy_09219T0/1-935 IDFSSDIRRQ PAPYVPTISH PMDTSNFDPV DEEGPWQDGS EDSSKAWDAL BACU000163/1-745 IDFSSDIRRQ PAPYVPTISH PMDTSNFDPV DEEGPWQDGS EDSSKAWDAL 1151 1200 ENSP00000372035/1-1088 TSPNNKHPEH AFYEFTFRRF FDDNGYPFRC PKPSGAEA-S QAESSDLESS ENSBTAP00000019161/1-1086 GPAGSRHPEH AFYEFTFRRF FDDNGHPFRC PKPAVAEAVT EAEQPASVGP ENSTTRP00000009347/1-992 GPPGSRHPEH AFYEFTFRRF FDDNGYPFRC PKPAVAETGT EAEQPAAGGP bmy_09219T0/1-935 GPPGSRHPEH AFYEFTFRRF FDDNGYPFRC PKPAVAETGT EAEQPAAGGP BACU000163/1-745 GPPGSRHPEH AFYEFTFRRF FDDNGYPFRC PKPAVAETGT EAEQPAAGGP 1201 1250 ENSP00000372035/1-1088 DLVDQTEGCQ PVYV ENSBTAP00000019161/1-1086 ALGAQAGGCQ PVYV ENSTTRP00000009347/1-992 APGAQAGSCQ PVYV bmy_09219T0/1-935 APGAQAGGCQ PVYV BACU000163/1-745 APGAQAGGCQ PVYV