KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:06:47 2014 Check: 00 .. Name: ENSBTAP00000019179/1-416 Len: 488 Check: 7069 Weight: 1.00 Name: ENSTTRP00000013075/1-418 Len: 488 Check: 9611 Weight: 1.00 Name: bmy_03113T0/1-465 Len: 488 Check: 6410 Weight: 1.00 Name: BACU020125/1-422 Len: 488 Check: 3862 Weight: 1.00 // 1 50 ENSBTAP00000019179/1-416 MAAGAVVGAW MLVLSLWGTV MGDQNITARI GKPVVLNCKG APKKPPQQLE ENSTTRP00000013075/1-418 MAAGAAAGAW VLVLSLWGAV VGDQNITARI GKPLVLNCKG APKKPPQQLE bmy_03113T0/1-465 ---MAAAGAW VLVLSLWGAV VGDQNITARI GKPLVLNCKG APKKPPQQLE BACU020125/1-422 MAAGAAAGAW VLVLSLWGAV VGDQNITARI GKPLVLNCKG APKKPPQQLE 51 100 ENSBTAP00000019179/1-416 WKL------- ---------- ---------- ---------- ---------- ENSTTRP00000013075/1-418 WKL------- ---------- ---------- ---------- ---------- bmy_03113T0/1-465 WKLVSGAPVS PLPERPVTIR IPSSPPPYLP TSSALSQRAC TVEAPLLCPQ BACU020125/1-422 WKL------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000019179/1-416 NTGRTEAWKV LSPQGDPWDS VARVLPNGSL LLPAVGIQDE GTFRCRATSR ENSTTRP00000013075/1-418 NTGRTEAWKV LSPQGGPWDS VARVLPNGSL LLPAVGIQDE GSFRCRAMSR bmy_03113T0/1-465 NTGRTEAWKV LSPQGGPWDS VARVLPNGSL LLPAVGIQDE GTFRCRAMSR BACU020125/1-422 NTGRTEAWKV LSPQGGPWDS VARVLPNGSL LLPAVGIQDE GTFRCRAMSR 151 200 ENSBTAP00000019179/1-416 SGKETKSNYR VRVYQIPGKP EIVDPASELM AGVPNK---- ---------- ENSTTRP00000013075/1-418 NGKETKSNYR VRVYQIPGKP EIVDPASELM AGVPDKV-EE KTRCGKGSEW bmy_03113T0/1-465 KGKETKSNYR VRVYQIPGKP EIVDPASELM AGVPDK---- ---------- BACU020125/1-422 KGKETKSNYR VRVYQIPGKP EIVDPASELM AGVPDKVGEE KARCGKGS-W 201 250 ENSBTAP00000019179/1-416 -----VGTCV SEGGYPAGTL NWLLDGKTLI PDGKGVSVKE ETKRHPKTGL ENSTTRP00000013075/1-418 E----VGTCV SKGGYPEGTL SWHLDGKTLI PDGKGVSVKE ETKRHPETGL bmy_03113T0/1-465 -----VGICV SKGGYPAGTL SWHLDGKTLI PDGKGVSVKE ETKRHPETGL BACU020125/1-422 SLFPQVGICV SKGGYPAGTL SWHLDGKTLI PDGKGVSVKE ETKRHPETGL 251 300 ENSBTAP00000019179/1-416 FTLHSELMVT PARGGALHPT FSCSFTPGLP RRRALHTAPI QLRVWSERRG ENSTTRP00000013075/1-418 FTLRSELMVT PARGGAPHPT FSCSFSPGLP RRRALHTAPI QLRVW----- bmy_03113T0/1-465 FTLRSELMVT PARGGAPHPT FSCSFSPGLP RRRALHTAPI QLRVWGERRT BACU020125/1-422 FTLRSELMVT PARGGAPHPT FSCSFSPGLP QRRALHTAPI QLRVW----- 301 350 ENSBTAP00000019179/1-416 GEGPNV---- --DAVPLKEV QLVVEPEGGA VAPGGTVTLT CEAPAQPPPQ ENSTTRP00000013075/1-418 ---------- --EPVPLEEV LLVVEPEGGA VAPGGTVTLT CEAPAQPPPQ bmy_03113T0/1-465 GEGPNLGEHL SEEPAPLEEV LLMVEPEGGA VAPGGTVTLT CEAPAQPPPQ BACU020125/1-422 ---------- --EPAPLEEV LLMVEPEGGA VAPGGTVTLT CEAPAQPPPQ 351 400 ENSBTAP00000019179/1-416 IHWIKDGRPL PLPPGPMLLL PEVGPEDQGT YSCVATHPSH GPQESRAVSV ENSTTRP00000013075/1-418 IHWIKDGMPL PLPTSSVLLL PEVGPEDQGT YSCVATHPSH GPQESHAVSV bmy_03113T0/1-465 IHWIKDGMPL PLTPSSVLLL PEVGPEDQGT YSCVATHPSH GPQESHAVSV BACU020125/1-422 IHWIKDGMPL PLPPSSVLLL PEVGPEDQGT YSCVATHPSH GPQESHAVSV 401 450 ENSBTAP00000019179/1-416 SIIETGEEGT TAGSVEGPGL ETLALTLGIL GGLGTVALLI GVIVWHRRRQ ENSTTRP00000013075/1-418 SIIETGEEGP TAGSVEGPEL GTLALALGIL GGLGTAALLI GVIMW-QRRQ bmy_03113T0/1-465 SIIETGEEGL TAGSVEGPEL GTLALALGIL GGLGTAALLI GVIMW-QRRQ BACU020125/1-422 SIIETGEEGL TAGSVEGPEL GTLALALGIL GGLGTAALLI GVIMW-QRRQ 451 500 ENSBTAP00000019179/1-416 RKGQERKVPE NQEEEEEERA ELNQPEEPEA AESSTGGP ENSTTRP00000013075/1-418 RRGEERKVPE NQEEEEEERT ELNQPEGPEA AESSAGGP bmy_03113T0/1-465 RRGEERKDPE NQEEEEEERT ELNQPEEPEA AESSAGGP BACU020125/1-422 RRGEERKDPE NQEEEEEERT ELNQPEEPEA AESSAGGP