KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:05 2014 Check: 00 .. Name: ENSP00000379566/1-871 Len: 1434 Check: 9455 Weight: 1.00 Name: ENSTTRP00000006181/1-867 Len: 1434 Check: 9507 Weight: 1.00 Name: ENSBTAP00000019198/1-724 Len: 1434 Check: 7314 Weight: 1.00 Name: bmy_16312T0/1-767 Len: 1434 Check: 4142 Weight: 1.00 Name: BACU015907/1-1434 Len: 1434 Check: 1412 Weight: 1.00 // 1 50 ENSP00000379566/1-871 MWPHSAGARP WASTLTGKDP RVMACWCLDG LPSGLAEPWR ELWRWRSRPL ENSTTRP00000006181/1-867 MWPHSSGARH WASALIGKDP GVMAWWCLDG LPQGLGEPWR ELWRLGSQPL ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 MWPHSSGARH WASALIGKDP GVMAWWCLDG LPQGLGEPWR ELWRLGSQPL 51 100 ENSP00000379566/1-871 HCVPPFSPLA RSSRDHRNLR RRGNIDGWRQ NLEPSNNVEM FPPSGSTGLI ENSTTRP00000006181/1-867 YYIRPFSPPS REGRDCRNLR RTGSIDGWTQ TLETSNNVEM FRPSGSTGLI ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------M FRPSGSTGLI bmy_16312T0/1-767 ---------- ---------- ---------- ---------M FRPSGSTGLI BACU015907/1-1434 HCIPPFSPPS RKGRDCRNLR RRGSIDGWTQ TLETSNNVEM FRPSGSTGLI 101 150 ENSP00000379566/1-871 PPSHFQARPL STLPRMAPTW LSDIPLVQPP GHQDVSERRL DTQRPQVTMW ENSTTRP00000006181/1-867 PPSHFQVRPF PTLPRMAPRW VSDIPLVQPP AHQDVLERRP DNQRPQVTMW ENSBTAP00000019198/1-724 PPSHFQVRPL PTLPRMAPTW ASDTPLVQRP THQDVLERRP DNQRPQVTMW bmy_16312T0/1-767 PPSHFQVRPL PTLPRMAPTW VSDIPLVQPP AHQDVLERRP DNQRPQVTMW BACU015907/1-1434 PPSHFQVRPL PTLPRMAPTW VSDIPLVQPP AHQDVLERRP DNQRPQVTMW 151 200 ENSP00000379566/1-871 ERDVSSDRQE PGRRGRSWGL EGSQALSQQA EVIVRQLQEL RRLEEEVRLL ENSTTRP00000006181/1-867 GQEVSGKGQE PGWRGRSVEL AGSQALSQQA ELISRQLREL RRLEEEVRVL ENSBTAP00000019198/1-724 EQEVSGKGQE PEWRGRCTEL AGSQALSQQA ELISRQLREL RRLEEEVRVL bmy_16312T0/1-767 EQEVSGKGQE PGWRGRSVEL AGSQALSQQA ELISRQLREL RRLEEEVRVL BACU015907/1-1434 EQEVSGKGQE PGWRGRSVEL AGSQALSQQA ELISRQLREL RHLEEEVQVL 201 250 ENSP00000379566/1-871 RETSLQQKMR LEAQAMELEA LARAEKAGRA EAEGLRAALA GAEVVRKNLE ENSTTRP00000006181/1-867 RETSLQQKMR LEAQAMELEA LARAEKAGRA EAEGLRAALA GAEVVRKNLE ENSBTAP00000019198/1-724 RETSLQQKLR LEAQAVELEA LARAEKAGRA EAEGLRAALA GAEVVRKNLE bmy_16312T0/1-767 RETSLQQKMR LEAQAMELEA LARAEKAGRT EAEGLRAALA GAEVVRKNLE BACU015907/1-1434 RETSLQQKMR LEAQAMELEA LARAEKAGRA EAEGLRAALA GAEVVRKNLE 251 300 ENSP00000379566/1-871 EGSQRELEEV QRLHQEQLSS LTQAHEEALS SLTSKAEGLE KSLSSLETRR ENSTTRP00000006181/1-867 EGSQRELEDV RRLHQEQLSS LTQAHVEALS SLTSKA-GLV XXXXXXXXXX ENSBTAP00000019198/1-724 EGSQRELEEV QRLHQEQLSS LTQAHQEALS SLTSKAGGLE KSLNNLETRR bmy_16312T0/1-767 EGSQRELEEV QKLHQEQLSS LTQAHREALS SLTSKAGGLE KSLSSLETRR BACU015907/1-1434 EGSQRELEEV QRLHQEQLSS LTQAHREALS SLTSKAGGLE KSLSSLETRR 301 350 ENSP00000379566/1-871 AGEAKELAEA QREAELLRKQ LSKTQEDLEA QVTLVENLRK YVGEQVPSEV ENSTTRP00000006181/1-867 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXRR YVGEQVPPEV ENSBTAP00000019198/1-724 SGETKELAAA QREAELLRKQ LSKTQEDLEA QVTLVENLRR YVGEQVPPEV bmy_16312T0/1-767 SGEAEELAAA QREAELLRKQ LRKTQEDLEA QVTLVENLRR YVGEQVPPEV BACU015907/1-1434 SGEAEELAAA QREAELLRKQ LRKTQEDLEA QVTLVENLRR YVGEQVPPEV 351 400 ENSP00000379566/1-871 HSQTWELERQ KLLETMQHLQ EDRDSLHATA ELLQVRVQSL THILALQEEE ENSTTRP00000006181/1-867 HSQMWESERQ ELLETVQHLR EDRAGLHTTT ELLQVRVQSL THILCMQEEE ENSBTAP00000019198/1-724 RSQAWESERQ ELLETVQHLQ EDRDSLHTTT ELLQVRVQSL THILCMQEEE bmy_16312T0/1-767 HSRMWESERQ ELLETVQHLR EDQAGLHTTA ELLQVRVQSL THILCMQEEE BACU015907/1-1434 HSQMWESERQ ELLETVQHLR EDQAGLHTTA ELLQVRVQSL THILCMQEEE 401 450 ENSP00000379566/1-871 LTRKVQPSDS LEPEFTRKCQ SLLNRWREKV FALMVQLKAQ ELEHSDSVKQ ENSTTRP00000006181/1-867 LARRVQPSDC LEPEFTKKRQ SLLKRWREKV FSLMVQLKAQ ELEHRDRVGQ ENSBTAP00000019198/1-724 LARKVQPSDC LEPEFTKKCQ SLLKRWREKV FALMVQLKAQ ELEHRECVER bmy_16312T0/1-767 LARRVQPSDC LEPEFTEKCQ SLLKRWREKV FALLVQLKAQ ELEHRECVEQ BACU015907/1-1434 LARRVQPSDC LEPEFTKKCQ SLLKRWREKV FALMVQLKAQ ELEHRECVEQ 451 500 ENSP00000379566/1-871 LKGQVASLQE KVTSQSQEQA ILQRSLQDKA AEVEVERMGA KGLQLELSRA ENSTTRP00000006181/1-867 LKGQVAELQE GVKTQCQEQA ILQRSLQDKA AEVEVERMGA KALQTELSRT ENSBTAP00000019198/1-724 LKGQVAELQE RVETQCQEQV ILQRSLQDKA AEVEVERMGA KALQMELNRT bmy_16312T0/1-767 LKGQVAELQE GVKTQCQEQA ILQRSLQDKA AEVEVERMGA K--------- BACU015907/1-1434 LKGQVAELQE GVKTQCQEQA ILQRSLQDKA AEVEVERMGA KALQTELSRT 501 550 ENSP00000379566/1-871 QEARRRWQQQ TASAEEQLRL VVNAVSSSQI WLETTMAKVE GAAAQLPSLN ENSTTRP00000006181/1-867 QEARRREQQQ TATAEEQLKL VANAVSSFET WLQGAVAEVT RAAARLPGLS ENSBTAP00000019198/1-724 QEARRRRKQQ AAPAEEQLRL VASAVS---- ---------- ---------- bmy_16312T0/1-767 -EARRREQQQ TATAEEQLKL VANAVSSFQT WLQSAMAEVK QAAARLPGLS BACU015907/1-1434 EEARRREQQQ TATAEEQLKL VANAVSSFQT WLQSAVAEVK RAAARLPGLS 551 600 ENSP00000379566/1-871 NRLSYAVRKV HTIRGLIARK LALAQLRQES CPLPPPVTDV SLELQQLREE ENSTTRP00000006181/1-867 SRVSYAVRKV HTIRGLMARK LALAQLRQES CPRPPPATDM SLELEQLREE ENSBTAP00000019198/1-724 ---------- ---------- ---------S CPPPPPTTDM SLELEQLREE bmy_16312T0/1-767 SRVSYAVRKV HTIQGLMARK LALAQLRQES CPRPPPATDM SLELEQLREE BACU015907/1-1434 SRVSYAVRKV HTIQGLMARK LALAQLRQES CPRPPPATDM SLELEQLREE 601 650 ENSP00000379566/1-871 RNRLDAELQL SARLIQQEVG RAREQGEAER QQLSKVAQQL EQELQQTQES ENSTTRP00000006181/1-867 RNRLDTELQL SAHIIQQEVG RAREQGEAER QKLSEVAQQL EQELQRTQES ENSBTAP00000019198/1-724 RNRLDAELQL SAHIIQQEVG RAREQGEAER QKLSEVAQQL EQELQRTQES bmy_16312T0/1-767 RNRLDAELQL SAHIIQQEVG RAREQGEAER QKLSEVAQQL EQELQRTQES BACU015907/1-1434 RNRLDTELQL SAHIIQQEVG RAREQGEAER QKLSEVAQQL EQELQRTQES 651 700 ENSP00000379566/1-871 LASLGLQLEV ARQGQQESTE EAASLRQELT QQQELYGQAL QEKVAEVETR ENSTTRP00000006181/1-867 LASLGLQLEA ARQGQQESTA EAASLRQELT QQQEVYGQAL QEKVAEVETR ENSBTAP00000019198/1-724 LASLGLQLEA ARQGQQESTA EAASLRKELT QQQEIYGQAL QEKVAEVEGR bmy_16312T0/1-767 LATLGLQLEA ARQGQQESTA EAASLRQELT QQQEIYGQAL QEKVAEVETR BACU015907/1-1434 LATLGLQLEA ARQGQQESTA EATSLRQELT QQQEIYGQAL QEKVAEVETR 701 750 ENSP00000379566/1-871 LREQLSDTER RLNEARREHA KAVVSLRQIQ RRAAQEKERS QELRRLQEEA ENSTTRP00000006181/1-867 LREQLSESER RLNEARREHT KAVVSLRQIQ RKATREKERN QELRRLQDEA ENSBTAP00000019198/1-724 LREQLSESER RLNEARREHT KAVVSLRQIQ RKATREKERN QELRRLQDEA bmy_16312T0/1-767 LREQLSESER RLNEARREHT KAVVSLRQIQ RKATREKERN QELRRLQDEA BACU015907/1-1434 LREQLSESER RLNEARREHT KAVVSLRQIQ RKATREKERN QELRRLQDEA 751 800 ENSP00000379566/1-871 RKEEGQRLAR RLQELERDKN LMLATLQQEG LLSRYKQQRL LTVLPSLLDK ENSTTRP00000006181/1-867 RKEEGQRLTQ RLKELERDKN LMLATLQQEG LLSRYKQQRL LAVLPSPSDK ENSBTAP00000019198/1-724 RKEEGQRLTQ RLKELERDKN LMLATLQQEG LLSRYKQQRL LAVLPSPSDK bmy_16312T0/1-767 RKEEGQRLTQ RLKELERDKN LMLATLQQEG LLSRYKQQRL LAVLPSPSDK BACU015907/1-1434 RKEEGQRLTQ RLKELERDKN LMLATLQQEG LLSRYKQQRL LAVLPSPSDK 801 850 ENSP00000379566/1-871 KKSVVSSPRP PECSASAPVA AAVPTRESIK G--------- ---------- ENSTTRP00000006181/1-867 GLPVESSLRP SESSAPAPPA PALCTKESIK G--------- ---------- ENSBTAP00000019198/1-724 GVPAEPSPKP SESSAPTPPA AALCTKESIK G--------- ---------- bmy_16312T0/1-767 GLPVESSPRP SESSAPAPPA AALCTKESIK G--------- ---------- BACU015907/1-1434 GLPVESSPRP SESSAPAPPA AALCTKESIK GISGSGDHPS PSSTEPSEEE 851 900 ENSP00000379566/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 GPPNIDSGPP NPWWPLAREL IPLNLPGLMT RGQQDPSLQK TPGHLPLRPV 901 950 ENSP00000379566/1-871 ---------- ---------S LSVLL----- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------S LSVLL----- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------S LSVLL----- ---------- ---------- bmy_16312T0/1-767 ---------- ---------S LSVLL----- ---------- ---------- BACU015907/1-1434 FSLHCEFPAG LQLLKGKDSS SSFLLRFRTV HPEPVPRAER GITEQPTVAW 951 1000 ENSP00000379566/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 SGCSPPSSGT LAKSIGTFSD PCKDHTSTTS PSDPCLLGKG GSSSFSSQSG 1001 1050 ENSP00000379566/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 SSSSSSFLSS SSGSSGGSSG SRGGSSGGSS GSSGGSSGSS GASSGSIATH 1051 1100 ENSP00000379566/1-871 ---------- ---------- -----DDLQD L--------- --------SE ENSTTRP00000006181/1-867 ---------- ---------- -----DDLQG L--------- --------SE ENSBTAP00000019198/1-724 ---------- ---------- -----DDLQG L--------- --------SE bmy_16312T0/1-767 ---------- ---------- -----DDLQG L--------- --------SE BACU015907/1-1434 GRSSGFSLFK PGTGYSQISY SSGSSSGLQG ATSSSQSGST SSQSGGGSSS 1101 1150 ENSP00000379566/1-871 AISKEEAV-- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 AISKEEAI-- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 AISKEEAI-- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 AISKEEAI-- ---------- ---------- ---------- ---------- BACU015907/1-1434 SVSQTSSMSS SSGQKVNAKL HPCSSNIPDS PCSGGPIVSH SGSYISSSHS 1151 1200 ENSP00000379566/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 VSGGKMPVVV VVEQHGSGGP RVGQSVPCSN GGLPGKPCPP IASVDKYGSY 1201 1250 ENSP00000379566/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 EVVGGSSDSY LVPGMTYIRG KIYPVGHFIK EHPIKGSPRV PSFAAGAPIS 1251 1300 ENSP00000379566/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 EGKYFSSNPI IPSHSSSSSN IYQSGASSAI VFQPVGSGGV PPYGVGSKGS 1301 1350 ENSP00000379566/1-871 ---------- ---------- -------CQG DNLDR----- ---------- ENSTTRP00000006181/1-867 ---------- ---------- -------CEG DIDLFF---- ---------- ENSBTAP00000019198/1-724 ---------- ---------- -------CEG DSQTSSSV-- ---------- bmy_16312T0/1-767 ---------- ---------- -------CEG DSQTSSSV-- ---------- BACU015907/1-1434 KEPCSLPSSG VHSSSSLSSS SGSSFHPCGG VSQRLSSSPG TGSFSGSSSS 1351 1400 ENSP00000379566/1-871 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006181/1-867 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019198/1-724 ---------- ---------- ---------- ---------- ---------- bmy_16312T0/1-767 ---------- ---------- ---------- ---------- ---------- BACU015907/1-1434 QSHGEIILQP CGSKSSSSGH SCISVSSSTL SRGAGGSSQH DPSAGAKPCG 1401 1450 ENSP00000379566/1-871 --------CS SSNPQMSS-- ---------- ---- ENSTTRP00000006181/1-867 --------CL SLSS------ ---------- ---- ENSBTAP00000019198/1-724 --------CL ---------- ---------- ---- bmy_16312T0/1-767 --------CH ---------- ---------- ---- BACU015907/1-1434 FGGSGTIPCH SIRDILTQVK PLGPQLADPE VFLP