KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:07:08 2014  Check: 00 ..

 Name: ENSBTAP00000019218/1-197  Len:    202  Check:  9447  Weight:  1.00
 Name: ENSP00000246794/1-202     Len:    202  Check:  9593  Weight:  1.00
 Name: ENSTTRP00000005201/1-162  Len:    202  Check:  5140  Weight:  1.00
 Name: bmy_06375T0/1-199         Len:    202  Check:  2682  Weight:  1.00
 Name: BACU018227/1-192          Len:    202  Check:  8802  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000019218/1-197  MRGCPSVLLL YLGLATCLDT SPSGKQGREV FLDSPEAQSF LGSRKRVPRA 
ENSP00000246794/1-202     MRGHPSLLLL YMALTTCLDT SPSEETDQEV FLGPPEAQSF LSSHTRIPRA 
ENSTTRP00000005201/1-162  ---------- ---------- ---------V FLDPPEAQSF LGSRRRIPRA 
bmy_06375T0/1-199         MRSHPSVLLL YLGLTTCLDT SPSGEQDQEV FLDSPEAQSF LGSRWRIPRA 
BACU018227/1-192          MRSHPSVLLL YLGLTTCLDT SPSGEQDQEV FLDSPEAQSF LGSRRRIPRA 


                          51                                                 100
ENSBTAP00000019218/1-197  NYWDLELFTP GNLERECLEE ICSWEEAREY FEDNILTDRF WESYIYNGKG 
ENSP00000246794/1-202     NHWDLELLTP GNLERECLEE RCSWEEAREY FEDNTLTERF WESYIYNGKG 
ENSTTRP00000005201/1-162  NHWDLELFTP GNLERECQEE RCSWEEAREY FEDNTLTERF WENYIYNGRG 
bmy_06375T0/1-199         NHWDLELFTP GNLERECQEE RCSWEEAREY FEDNTLTERF WENYIYNGKG 
BACU018227/1-192          NHWDLELFTP GNLERECQEE RCSWEEAREY FEDNTLTERF WENYIYNGKG 


                          101                                                150
ENSBTAP00000019218/1-197  GRGRVDVASL AVGLTVGVVL IILAGLGAFW YLHGRRGRRQ RSCPQDVELI 
ENSP00000246794/1-202     GRGRVDVASL AVGLTGGILL IVLAGLGAFW YLRWRQHRGQ QPCPQEAGLI 
ENSTTRP00000005201/1-162  GRGRGDVASM AVGLTVGILL MVLASLGAFW YLHCRQKRGQ QPSPQEAELI 
bmy_06375T0/1-199         GRGRVDVASM AVGLTVGILL MVLASLGAFW YLHCRQDRGQ QPCPQEAELI 
BACU018227/1-192          GRGRVDVASM AVGLTVGILL MVLASLGAFW YLHCRQDRGQ QPCPQEAELP 


                          151                                                200
ENSBTAP00000019218/1-197  RPLSDLS--- PQTPQPPP-- PPPGLPTYEQ ALAASGVHDA PPPPYTSLRR 
ENSP00000246794/1-202     SPLSPLNPLG PPTPLPPPPP PPPGLPTYEQ ALAASGVHDA PPPPYTSLRR 
ENSTTRP00000005201/1-162  SPLSSLS--- PPTPLPPP-- PPPGLPTYEQ ALAASGVHDA PPPPYA---- 
bmy_06375T0/1-199         SPLSSLS--- PPTPLPPPPR PPPGLPTYEQ ALLAPGVHDA PPPPYASLRR 
BACU018227/1-192          SPLSSLS--- PPTPLPPPPP PPPGLPTYEQ ALLAPGVHDA PPPPY----- 


                          201                                                250
ENSBTAP00000019218/1-197  HS 
ENSP00000246794/1-202     PH 
ENSTTRP00000005201/1-162  -- 
bmy_06375T0/1-199         PR 
BACU018227/1-192          --