KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:09 2014 Check: 00 .. Name: ENSTTRP00000003022/1-1400 Len: 1473 Check: 3085 Weight: 1.00 Name: ENSP00000306983/1-1422 Len: 1473 Check: 6231 Weight: 1.00 Name: ENSBTAP00000019219/1-1412 Len: 1473 Check: 2692 Weight: 1.00 Name: bmy_12625T0/1-1263 Len: 1473 Check: 4298 Weight: 1.00 Name: BACU016584/1-1403 Len: 1473 Check: 1507 Weight: 1.00 // 1 50 ENSTTRP00000003022/1-1400 MSGIKRTVKE TDPDYEDVSV ALPNKRHKAI ENSARDAAVQ KIETIIKEQF ENSP00000306983/1-1422 MSGIKRTIKE TDPDYEDVSV ALPNKRHKAI ENSARDAAVQ KIETIIKEQF ENSBTAP00000019219/1-1412 MSGIKRTIKE TDPDYEDVSV ALPNKRHKAI ENSARDAAVQ KIETIIKEQF bmy_12625T0/1-1263 MSGIKRTIKE TDPDYEDVSV ALPNKRHKAI ENSARDAAVQ KIETIIKEQF BACU016584/1-1403 MSGIKRTIKE TDPDYEDVSV ALPNKRHKAI ENSARDAAVQ KIETIIKEQF 51 100 ENSTTRP00000003022/1-1400 ALEMKNKEHE IEVIDQRLIE ARRMMDKLRA CIVANYYASA GLLKVSEGSK ENSP00000306983/1-1422 ALEMKNKEHE IEVIDQRLIE ARRMMDKLRA CIVANYYASA GLLKVSEGSK ENSBTAP00000019219/1-1412 ALEMKNKEHE IEVIDQRLIE ARRMMDKLRA CIVANYYASA GLLKVSEGSK bmy_12625T0/1-1263 ALEMKNKEHE IEVIDQ---- ---------- ---------- ---------- BACU016584/1-1403 ALEMKNKEHE IEVIDQRLIE ARRMMDKLRA CIVANYYASA GLLKVSEGSK 101 150 ENSTTRP00000003022/1-1400 TCDTMVFNHP AVKKFLESPS RSSSPANQRS ETPSANHSES DSLSQHNDFL ENSP00000306983/1-1422 TCDTMVFNHP AIKKFLESPS RSSSPANQRA ETPSANHSES DSLSQHNDFL ENSBTAP00000019219/1-1412 TCDTMVFNHP AIKKFLESPS RSSSPANQRS ETPSANHSES DSLSQHNDFL bmy_12625T0/1-1263 ---------- ---------- ---------- ---------- ---------- BACU016584/1-1403 TCDTMVFNHP AIKKFLESPS RSSSPANQRS ETPSANHSES DSLSQHNDFL 151 200 ENSTTRP00000003022/1-1400 SDKDTNSNVD IEERLSSNTE QRPSRNTGRD TSGITGSHKT EQRNTDLTGD ENSP00000306983/1-1422 SDKDNNSNMD IEERLSNNME QRPSRNTGRD TSRITGSHKT EQRNADLT-D ENSBTAP00000019219/1-1412 SDKDTNSNMD IEERLSSNTE QRPSRNTGRD TSSIAGSHKT EQRNTDLTGD bmy_12625T0/1-1263 ---------- ---------- ---------D TSGITGSHKT EQRNTDLTGD BACU016584/1-1403 SDKDTNSNLD IEERLSSNTE QRPSRNTGRD TSGITGSHKT EQRNTDLTGD 201 250 ENSTTRP00000003022/1-1400 ETSRLFVKKT IVVGNVSKYI PPDKREENDQ STHKWMVYVR GSRREPSINH ENSP00000306983/1-1422 ETSRLFVKKT IVVGNVSKYI PPDKREENDQ STHKWMVYVR GSRREPSINH ENSBTAP00000019219/1-1412 ETSRLFVKKT IVVGNVSKYI PPDKREENDQ STHKWMVYVR GSRREPSINH bmy_12625T0/1-1263 ETSRLFVKKT IVVGNVSKYI PPDKREENDQ STHKWMVYVR GSRREPSINH BACU016584/1-1403 ETSRLFVKKT IVVGNVSKYI PPDKREENDQ STHKWMVYVR GSRREPSINH 251 300 ENSTTRP00000003022/1-1400 FVKKVWFFLH PSYKPNDLVE VREPPFHLTR RGWGEFPVRV QVHFKDSQNK ENSP00000306983/1-1422 FVKKVWFFLH PSYKPNDLVE VREPPFHLTR RGWGEFPVRV QVHFKDSQNK ENSBTAP00000019219/1-1412 FVKKVWFFLH PSYKPNDLVE VREPPFHLTR RGWGEFPVRV QVHFKDSQNK bmy_12625T0/1-1263 FVKKVWFFLH PSYKPNDLVE VREPPFHLTR RGWGEFPVRV QVHFKDSQNK BACU016584/1-1403 FVKKVWFFLH PSYKPNDLVE VREPPFHLTR RGWGEFPVRV QVHFKDSQNK 301 350 ENSTTRP00000003022/1-1400 RIDIIHNLKX XXXXXXXXXX XXXXVVDVEL HRHSLGEDTV YPQSSESDIS ENSP00000306983/1-1422 RIDIIHNLKL DRTYTGLQTL GAETVVDVEL HRHSLGEDCI YPQSSESDIS ENSBTAP00000019219/1-1412 RIDIIHNLKL DRTYTGLQTL GAETVVDVEL HRHSLGEDSV YPQSSESDIS bmy_12625T0/1-1263 RIDIIHNLKL DRTYTGLQTL GAETVVDVEL HRHSLGEDSV YPQSSESDIS BACU016584/1-1403 RIDIIHNLKL DRTYTGLQTL GAETVVDVEL HRHSLGEDSV YPQSSESDIS 351 400 ENSTTRP00000003022/1-1400 DAPPSLPLTI PAPVKASSPV KQSHEPVPDT SVEK-GFPAN TEAERHTTFY ENSP00000306983/1-1422 DAPPSLPLTI PAPVKASSPI KQSHEPVPDT SVEK-GFPAS TEAERHTPFY ENSBTAP00000019219/1-1412 DAPPSLPLTI PAPMKASSPI KQSHEPVPDT SVEKEGFPAN TEAERHTTFY bmy_12625T0/1-1263 DAPPSLPLTI PAPVKASSPV KQSHEPVPDT SVEKEGFPAS TEAERHTTFY BACU016584/1-1403 DAPPSLPLTI PAPVKASSPV KQSHEPVPDT SVEKEGFPAN TEAERHTTFY 401 450 ENSTTRP00000003022/1-1400 SLPSSLERTP TKMTTSQKVT FCSHGNSAFQ PIASSCKIVP QSQVPNPESP ENSP00000306983/1-1422 ALPSSLERTP TKMTTSQKVT FCSHGNSAFQ PIASSCKIVP QSQVPNPESP ENSBTAP00000019219/1-1412 SLPSSLERTP TKMTTSQKVT FCSHGNSAFQ PIASSCKIVP QGQIPNPESP bmy_12625T0/1-1263 SLPSSLERTP TKMTTSQKVT FCSHGNSAFQ PIASSCKIVP QSQVPNPESP BACU016584/1-1403 SLPSSLERTP TKMTTSQKVT FCSHGNSAFQ PIASSCKIVP QSQVPNPESP 451 500 ENSTTRP00000003022/1-1400 GKSFQPITMS CKIVSGSPIS TPSPSPLPRT PTSTPVHVKQ GTASSVINNP ENSP00000306983/1-1422 GKSFQPITMS CKIVSGSPIS TPSPSPLPRT PTSTPVHVKQ GTAGSVINNP ENSBTAP00000019219/1-1412 GKSFQPITMS CKIVSGSPIS TPSPSPLPRT PTSTPVHVKQ GTTSSVINNP bmy_12625T0/1-1263 GKSFQPITMS CKIVSGSPIS TPSPSPLPRT PTSTPVHVKQ GTASSVINNP BACU016584/1-1403 GKSFQPITMS CKIVSGSPIS TPSPSPLPRT PTSTPVHVKQ GTASSVINNP 501 550 ENSTTRP00000003022/1-1400 YVIVDK-PGQ VIGATTPTAX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000306983/1-1422 YVIMDKQPGQ VIGATTPSTG SPTNKISTAS QVSQGTGSPV PKIHGSSFVT ENSBTAP00000019219/1-1412 YVIVDK-PGQ VIGASTPTAG SPTSKLSTAS QASQGTGSPI PKIHGSSFVT bmy_12625T0/1-1263 YVIVDK-PGQ VIGATTPTAG SPTSKLSTAS QASQGTGSPI PKIHGSSFVT BACU016584/1-1403 YVIVDK-PGQ VIGATTPTAG SPTSKLSTAS QASQGTGSPI PKIHGSSFVT 551 600 ENSTTRP00000003022/1-1400 XXXX------ ---------- --QEDSLFAS MPPLCPIGSH PKVQSPKPIT ENSP00000306983/1-1422 STVK------ ---------- --QEDSLFAS MPPLCPIGSH PKVQSPKPIT ENSBTAP00000019219/1-1412 SAVK------ ---------- --QEDSLFAS MPPLCPIGSH PKVQSPKPIT bmy_12625T0/1-1263 SAVKXEITHF ILIVQYVFLQ TQQEDSLFAS MPPLCPIGSH PKVQSPKPIT BACU016584/1-1403 SAVK------ ---------- --QEDSLFAS MPPLCPIGSH PKVQSPKPIT 601 650 ENSTTRP00000003022/1-1400 GGLGAFTKVI IKQEPGEASH VPTTGAASQS PLPQYVTVKG GHMIAVSPQK ENSP00000306983/1-1422 GGLGAFTKVI IKQEPGEAPH VPATGAASQS PLPQYVTVKG GHMIAVSPQK ENSBTAP00000019219/1-1412 GGLGAFTKVI IKQEPGEASH VPTTGAASQL PLPQYVTVKG GHMIAVSPQK bmy_12625T0/1-1263 GGLGAFTKVI IKQEPGEASH VPTTGAASQS PLPQYVTVKG GHMIAVSPQK BACU016584/1-1403 GGLGAFTKVI IKQEPGEASH VPTAGAASQS PLPQYVTVKG GHMIAVSPQK 651 700 ENSTTRP00000003022/1-1400 QVLTAGEGTA QSPKIQPSKV VGVPVGSTLP SAVKQAVAIS GGQILVAKAS ENSP00000306983/1-1422 QVITPGEGIA QSAKVQPSKV VGVPVGSALP STVKQAVAIS GGQILVAKAS ENSBTAP00000019219/1-1412 QVLTAGEGTA QSPKIQPSKV VGVPVGSTLP STVKQAVAIS GGQILVAKAS bmy_12625T0/1-1263 QVLTAGEGTA QSPKIQPSKV VGVPVGSTLP SAVKQAVAIS GGQILVAKAS BACU016584/1-1403 QVLTAGEGTA QSPKIQPSKV VGVPVGSTLP SAVKQAVAIS GGQILVAKAS 701 750 ENSTTRP00000003022/1-1400 SSVAKAVGPK QVVTQGVAKA IVSGGGGTIV AQPMQALTKA QVTAAGPQKS ENSP00000306983/1-1422 SSVSKAVGPK QVVTQGVAKA IVSGGGGTIV AQPVQTLTKA QVTAAGPQKS ENSBTAP00000019219/1-1412 SSVTKAVGPK QVVTQGVAKA IVSGGGGTIV AQPVQTLTKA QVTAAGPQKS bmy_12625T0/1-1263 SSVAKAVGPK QVVTQGVAKA IVSGGGGTIV AQPVQALTKA QVTAAGPQKS BACU016584/1-1403 SSVAKAVGPK QVVTQGVAKA IVSGGGGTIV AQPVQALTKA QVTAAGPQKS 751 800 ENSTTRP00000003022/1-1400 GSQGSVMATL QLPATNLANL ANLPPGTKLY LTTNSKNPSG KGKLLLIPQG ENSP00000306983/1-1422 GSQGSVMATL QLPATNLANL ANLPPGTKLY LTTNSKNPSG KGKLLLIPQG ENSBTAP00000019219/1-1412 GSQGSVMATL QLPATNLANL ANLPPGTKLY LTTNSKNPSG KGKLLLIPQG bmy_12625T0/1-1263 GSQGSVMATL QLPATNLANL ANLPPGTKLY LTTNSKNPSG KGKLLLIPQG BACU016584/1-1403 GSQGSVMATL QLPATNLANL ANLPPGTKLY LTTNSKNPSG KGKLLLIPQG 801 850 ENSTTRP00000003022/1-1400 AILRATNNSN LQSGSAASSG ---GGGSGSG ---------G GT-------- ENSP00000306983/1-1422 AILRATNNAN LQSGSAASGG SGAGGGGGGG GGGGSGSGGG GSTGGGGGTA ENSBTAP00000019219/1-1412 AILRATNNAN LQSGSAGSSG ---GGSSSGG GGGGSSGATG GT-------- bmy_12625T0/1-1263 AILRATNNSN LQSGSAASSG ---GGGSGSG ---------G GT-------- BACU016584/1-1403 AILRATNNSN LQSGSAASSS ---GGSSGSG ---------G GT-------- 851 900 ENSTTRP00000003022/1-1400 -GGAQSPAGP ----GGISQH LTYTSYILKQ TPQGTFLVGQ PSPQTSGKQL ENSP00000306983/1-1422 GGGTQSTAGP ----GGISQH LTYTSYILKQ TPQGTFLVGQ PSPQTSGKQL ENSBTAP00000019219/1-1412 -GGAQNPAGP ----GGISQH LTYTSYILKQ TPQGTFLVGQ PSPQTSGKQL bmy_12625T0/1-1263 -GGAQSPAGP GGSPGGISQH LTYTSYILKQ TP-------- ---------- BACU016584/1-1403 -GGAQSPAGP ----GGISQH LTYTSYILKQ TPQGTFLVGQ PSPQTSGKQL 901 950 ENSTTRP00000003022/1-1400 TTGSVVQGTL GVSTSSAQGQ QTLKVISGQK TTLFTQAAPG AQASLMKISD ENSP00000306983/1-1422 TTGSVVQGTL GVSTSSAQGQ QTLKVISGQK TTLFTQAAHG GQASLMKISD ENSBTAP00000019219/1-1412 TTGSVVQGTL GVSTSSAQGQ QTLKVISGQK TTLFTQAAPG GQASLMKISD bmy_12625T0/1-1263 ---------- ---------- ---------- -----QAAPG AQASLMKISD BACU016584/1-1403 TTGSVVQGTL GVSTSSAQGQ QTLKVISGQK TTLFTQAAPG AQASLMKISD 951 1000 ENSTTRP00000003022/1-1400 STLKSVPATS QLSKPGTTML RVAGGVITTA SSPAVALSAN GPAQ-QSEGT ENSP00000306983/1-1422 STLKTVPATS QLSKPGTTML RVAGGVITTA TSPAVALSAN GPAQ-QSEGM ENSBTAP00000019219/1-1412 STLKSVPATS QLSKPGTTML RVAGGVITTA TSPAVALSAN GPAQQQSEGT bmy_12625T0/1-1263 STLKSVPATS QLSKPGTTML RVAGGVITTA SSPAVALSAN GPAQ------ BACU016584/1-1403 STLKSVPATS QLSKPGTTML RVAGGVITTA SSPAVALSAN GPAQQQSEGT 1001 1050 ENSTTRP00000003022/1-1400 APSSSSAMTS VMKTSGQQQV CVSPATMGPC KAATSSVISA TSLVSTPNPI ENSP00000306983/1-1422 APVSSSTVSS VTKTSGQQQV CVSQATVGTC KAATPTVVSA TSLVPTPNPI ENSBTAP00000019219/1-1412 TPGSSSAVGS VMKTSGQQQV CVSQAAVGSC KAPAPSVISA TSLVSTPNPI bmy_12625T0/1-1263 ---------- ------QQQV CVSPATMGPC KAAAPSVISA TSLVSTPNPI BACU016584/1-1403 APSSSSTVTS VMKTSGQQQV CMSPATMGPC KAAAPSVISA TSLVSTPNPI 1051 1100 ENSTTRP00000003022/1-1400 SGKATVSGLL KIHSSQSNPQ QAV-TIPSQL KPLSVNTSGG VQTILMPVNK ENSP00000306983/1-1422 SGKATVSGLL KIHSSQSSPQ QAVLTIPSQL KPLSVNTSGG VQTILMPVNK ENSBTAP00000019219/1-1412 SGKATVSGLL KIHSSQSNPQ QAVLTIPSQL KPLSVNTSGG VQTILMPVNK bmy_12625T0/1-1263 SGKATVSGLL KIHSSQSNPQ QAVLTIPSQL KPLSVNTSGG VQTILMPVNK BACU016584/1-1403 SAKATVSGLL KIHSSQSNPQ QAVLTIPSQL KPLSVNTSGG VQTILMPVNK 1101 1150 ENSTTRP00000003022/1-1400 VVQSFPTNKS PAILPVAAPT PVVPSSAPAT VTKVKTEPET PVPSCPSQDG ENSP00000306983/1-1422 VVQSFSTSKP PAILPVAAPT PVVPSSAPAA VAKVKTEPET PGPSCLSQEG ENSBTAP00000019219/1-1412 VVQSFSTSKS PAILPVAAPT PVVPSSAPAA VTKVKTEPET PAPGGPSQDG bmy_12625T0/1-1263 VVQSFPTNKS PAILPVAAPT PVVPSSAPAT VTKVKTEPET PVPSCPSQDG BACU016584/1-1403 VVQSFPTNKS PAILPVAAPT PVVPSSAPAT VTKVKTEPET PVPSCPSQDG 1151 1200 ENSTTRP00000003022/1-1400 HTAVKTEESS ELGNYVIKID HLETIQQLLT AVVKKIPLIT AKSEDASXXX ENSP00000306983/1-1422 QTAVKTEESS ELGNYVIKID HLETIQQLLT AVVKKIPLIT AKSEDASCFS ENSBTAP00000019219/1-1412 QTAVKTEDSS ELGNYVIKID HLETIQQLLT AVVKKIPLIT AKSEDASCFS bmy_12625T0/1-1263 HTAVKTEESS ELGNYVIKID HLETIQQLLT AVVKKIPLIT AKSEDASCFS BACU016584/1-1403 HTAVKTEESS ELGNYVIKID HLETIQQLLT AVVKKIPLIT AKSEDASCFS 1201 1250 ENSTTRP00000003022/1-1400 XXXXXXXXXX XXXXXXXXXW QRAMTMRKVL QEILEKNPRF HHLTPLKTKH ENSP00000306983/1-1422 AKSVEQYYGW NIGKRRAAEW QRAMTMRKVL QEILEKNPRF HHLTPLKTKH ENSBTAP00000019219/1-1412 AKSVEQYYGW NIGKRRAAEW QRAMTMRKVL QEILEKNPRF HHLTPLKTKH bmy_12625T0/1-1263 AKSVEQYYGW NIGKRRAAEW QRAMTMRKVL QEILEKNPRF HHLTPLKTKH BACU016584/1-1403 AKSVEQYYGW NIGKRRAAEW QRAMTMRKVL QEILEKNPRF HHLTPLKTKH 1251 1300 ENSTTRP00000003022/1-1400 IAHWCRCHGY TPPDPESLRS DGDSIEDVLT QIDSEP---- ---------- ENSP00000306983/1-1422 IAHWCRCHGY TPPDPESLRN DGDSIEDVLT QIDSEP---- ---------- ENSBTAP00000019219/1-1412 IAHWCRCHGY TPPDPESLRS DGDSIEDVLT QIDSEP---- ---------- bmy_12625T0/1-1263 IAHWCRCHGY TPPDPESLRS DGDSIEDVLT QIDSEPGYWS LGDGKSLSFV BACU016584/1-1403 IAHWCRCHGY TPPDPESLRS DGDSIEDVLT QIDSEP---- ---------- 1301 1350 ENSTTRP00000003022/1-1400 ---------- --ECPSSFSS ADNLCRKLED LQQFQKREPE NEEEVDILNL ENSP00000306983/1-1422 ---------- --ECPSSFSS ADNLCRKLED LQQFQKREPE NEEEVDILSL ENSBTAP00000019219/1-1412 ---------- --ECPSSFSS ADNLCRKLED LQQFQKREPE NEEEVDILNV bmy_12625T0/1-1263 TTAVIRLITS HLECPSSFSS ADNLCRKLED LQQFQKREPE NEEEVDILNL BACU016584/1-1403 ---------- --ECPSSFSS ADNLCRKLED LQQFQKREPE NEEEVDILNL 1351 1400 ENSTTRP00000003022/1-1400 SEPLKINIKK EQDEKQEEMK FYLPPTPGSE FIGDITQKIG ITLQPVALHR ENSP00000306983/1-1422 SEPVKINIKK EQEEKQEEVK FYLPPTPGSE FIGDVTQKIG ITLQPVALHR ENSBTAP00000019219/1-1412 SEPLKINIKK EQEEKQEEMK LYLPPTPGSE FIGDITQKIG ITLQPVALHK bmy_12625T0/1-1263 SEPLKINIKK EQDEKQEEMK FYLPPTPGSE FIGDITQKIG ITLQPVALHR BACU016584/1-1403 SEPLKINIKK EQDEKQEEMK FYLPPTPGSE FIGDITQKIG ITLQPVALHR 1401 1450 ENSTTRP00000003022/1-1400 NVYASVVEDM ILKATEQLVS DILRQALAVG YQAASHNRIP KEITVSNIHQ ENSP00000306983/1-1422 NVYASVVEDM ILKATEQLVN DILRQALAVG YQTASHNRIP KEITVSNIHQ ENSBTAP00000019219/1-1412 NVYASVVEDM LLKATEQLVS DILRQALAVG YQAASHNRIP KEITVSNIHQ bmy_12625T0/1-1263 NVYASVVEDM ILKATEQLVS DILRQALAVG YQAASHNRIP KEITVSNIHQ BACU016584/1-1403 NVYASVVEDM ILKATEQLVS DILRQALAVG YQAASHNRIP KEITVSNIHQ 1451 1500 ENSTTRP00000003022/1-1400 AICNTPFLDF LTNKHMGILN EDQ ENSP00000306983/1-1422 AICNIPFLDF LTNKHMGILN EDQ ENSBTAP00000019219/1-1412 AICNIPFLDF LTNKHMGILN EDQ bmy_12625T0/1-1263 AICNTPFLDF LTNKHMGILN EDQ BACU016584/1-1403 AICNTPFLDF LTNKHMGILN EDQ