KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:10 2014 Check: 00 .. Name: bmy_21420T0/1-533 Len: 1037 Check: 6450 Weight: 1.00 Name: ENSP00000256797/1-974 Len: 1037 Check: 1374 Weight: 1.00 Name: ENSTTRP00000004965/1-897 Len: 1037 Check: 6379 Weight: 1.00 Name: ENSBTAP00000019220/1-925 Len: 1037 Check: 2869 Weight: 1.00 Name: BACU011865/1-864 Len: 1037 Check: 549 Weight: 1.00 // 1 50 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 MRRAGIGEDS RLGLQAQPGA EPSPGRAGTE RSLGGTQGPG QPCSCPGAMA ENSTTRP00000004965/1-897 MGRAGERENY GLRLRAQPGA ESLP-RAGAQ RSPGGRGPGQ LCGRRLCAMA ENSBTAP00000019220/1-925 ---------- ---------- ---------- ---------- --------MA BACU011865/1-864 ---------- ---------- ---------- ---------- --------MA 51 100 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 SAVRGSRPWP RLGLQLQFAA LLLGTLSPQV HTLRPENLLL VSTLDGSLHA ENSTTRP00000004965/1-897 SAARGSGPWS PFLLQL---A ALLGTLEPQV QTFTPENLLF VSTLDGSLHA ENSBTAP00000019220/1-925 SAARRSGPWP RLLLQL---A ALLGTLRPQV QSFTPENLLF VSTLDGSLHA BACU011865/1-864 SAARGSGPWS PLLLQL---A ALLGTLGPQV QTFTPENLLF VSTLDGSLHA 101 150 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 LSKQTGDLKW TLRDDPVIEG PMYVTEMAFL SDPADGSLYI LGTQKQQGLM ENSTTRP00000004965/1-897 LIKQTGDLKW TLKDDPIIQG PMYVTETAFL SDPADGSLYI LGTQKQQGLM ENSBTAP00000019220/1-925 LSKQTGDLKW TLKDEPIIQG PTYVTETVFL SDPADGSLYI LGTQKQQGLM BACU011865/1-864 LIKQTGDLKW TLKDDPIIQG PMYVTETAFL SDPADGSLYI LGTQKQQGLM 151 200 bmy_21420T0/1-533 ---------- ---------- ---------- MF-------- ---------- ENSP00000256797/1-974 KLPFTIPELV HASPCRSSDG VFYTGRKQDA WFVVDPESGE TQMTLTTEGP ENSTTRP00000004965/1-897 RLPFTIPELV HASPCRSSDG VFYTGRKQDA WFVVDPESGK TQMTLTTERP ENSBTAP00000019220/1-925 RLPFTIPELV HASPCRSSDG VFYTGRKQDA WFVVDPESGK TQMTLTTERP BACU011865/1-864 RLPFTIPELV HASPCRSSDG VFYTGRKQDA WFVVDPESGK TQMTLTTERP 201 250 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 STPRLYIGRT QYTVTMHDPR APALRWNTTY RRYSAPPMDG SPGKYMSHLA ENSTTRP00000004965/1-897 STPRLYIGRT QYTVTMHDPR APALRWNTTY RRYAAAPVDG SPGKYMSYLA ENSBTAP00000019220/1-925 STPRLYIGRT QYTVTMHDPR TPALRWNTTF RRYSAPPVDG SPGKYMSYLA BACU011865/1-864 STPRLYIGRT QYTVTMHDPR APALRWNTTY RRYSAAPVDG SPGKYMSYLA 251 300 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 SCGMGLLLTV DPGSGTVLWT QDLGVPVMGV YTWHQDGLRQ LPHLTLARDT ENSTTRP00000004965/1-897 SCGMGLLLTV DPGSGAVLWT QDLGVPVVGV YTWHQDSLRQ LPHLTLARDT ENSBTAP00000019220/1-925 SCGMGLLLTV DPGSGAVLWT QDLGVPVVGI YTWHQENLRQ LPHLTLARDT BACU011865/1-864 SCGMGLLLTV DPGSGAVLWT QDLGVPVVGV YTWHQDSLRQ LPHLTLARDT 301 350 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 LHFLALRWGH IRLPASGPRD TATLFSTLDT QLLMTLYVGK DETGFYVSKA ENSTTRP00000004965/1-897 LHFLALRWGH IQLPASGPQD TATHFSALDT QLLMTLYVGK DEAGFYVSKA ENSBTAP00000019220/1-925 LHFLALRWGH IRLPASGPQD TATHFPALDT QLLMTLYVGK DEAGFYVSKA BACU011865/1-864 LHFLALRRGH IQLPASGPQD TATHFSALDT QLLMTLYVGK DEAGFYVSKS 351 400 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 LVHTGVALVP RGLTLAPADG PTTDEVTLQV SGEREGSPST AVRYPSGSVA ENSTTRP00000004965/1-897 LVHTGVALVP RGLTLAPTDG PTTDEVTLQV SGEREGSPST AVRYPSGSTA ENSBTAP00000019220/1-925 LVHTGVALVP RGLTLAPTDG PTTEEVTLQV SGEREGSPST AVRYPSGSVA BACU011865/1-864 LVHTGVALVP RGLTLAPTDG PTTD------ ---------- ---------- 401 450 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 LPSQWLLIGH HELPPVLHTT MLRVHPTLGS GTAETRPPEN TQAPAFFLEL ENSTTRP00000004965/1-897 LPSQWLLIGH HEPPPVLHTT MLRFHPTPGS GTSGTRPSGG TQAPALFLEX ENSBTAP00000019220/1-925 LPSQWLLIGH HEPPPVLHTT MLRVHPTPGS GASGTRPSES IQAPTLFLEL BACU011865/1-864 ---------- ---------- ---------- ---------- --------EL 451 500 bmy_21420T0/1-533 ---------- ---------- ---------- ---------- ---------- ENSP00000256797/1-974 LSLSREKLWD SELHPEEKTP DSYLGLGPQD LLAASLTAVL LGGWILFVMR ENSTTRP00000004965/1-897 XXLSREEPSN LELH-EEKTP D-CIRLGPQD -LAASITA-L LGGWLLFVMR ENSBTAP00000019220/1-925 LSLSREEPPD LELHPEKKTS ALYPGLGPQD LLAASLTALL LGGWILFLMR BACU011865/1-864 LSLSREEPSN LELHPEEKTP DLYPGLGPQH LLVASLTALL LGGWILFLMR 501 550 bmy_21420T0/1-533 QQQQQQLAEK QWQQAPLA-- ----PAGPSH ISQDAQSQPS GATPRSRKRF ENSP00000256797/1-974 QQQPQ--VVE KQQETPLA-- ----PADFAH ISQDAQSLHS GASRRSQKRL ENSTTRP00000004965/1-897 QQQQQQLAEK QWQQASLA-- ----PAGPSH ISQDAQSQPS GATPRSRKRF ENSBTAP00000019220/1-925 QQQQQQLAEK QQHQAPLA-- ----PAGPSD ISQDAQPQPS SATLQSQKKL BACU011865/1-864 QETEAFWGIP AALELTLGQL SIEVPTDPTL PSSRTVFSAT AFTLLMLNGC 551 600 bmy_21420T0/1-533 QNPPEQDQPL EDPEGQSFLQ QHSPFSCLRL PKLTFPSEAN SSVKRVYCNW ENSP00000256797/1-974 QSPSKQAQPL DDPE------ ---------- ---------- ---------- ENSTTRP00000004965/1-897 QNPPEQDQPL EDPE------ ---------- ---------- ---------- ENSBTAP00000019220/1-925 QNPPEQGQPL EDPE------ ---------- ---------- ---------- BACU011865/1-864 QNSPSRLKRI PQLKGFIITG ---------- ---------- ---------- 601 650 bmy_21420T0/1-533 WRAAAVGRGF LRPPSPLPAA EQLTVVGKIS FNPKDVLGRG AGGTFVFRGQ ENSP00000256797/1-974 ---------- ---------A EQLTVVGKIS FNPKDVLGRG AGGTFVFRGQ ENSTTRP00000004965/1-897 ---------- ---------A EQLTVVGKIS FNPKDVLGRG AGGTFVFRGQ ENSBTAP00000019220/1-925 ---------- ---------A EQLTVVGKIS FNPKDVLGRG AGGTFVFRGQ BACU011865/1-864 ---------- --------GA EQLTVVGKIS FNPKDVLGRG AGGTFVFRGQ 651 700 bmy_21420T0/1-533 FEGRAVAVKR LLRECFGLVR REVQLLQESD RHPNVLRYFC TERGPQFHYI ENSP00000256797/1-974 FEGRAVAVKR LLRECFGLVR REVQLLQESD RHPNVLRYFC TERGPQFHYI ENSTTRP00000004965/1-897 FEGRAVAVKR LLRECFGLVR REVQMLQESD RHPNVLRYFC TERGPQFHYI ENSBTAP00000019220/1-925 FEGRAVAVKR LLRECFSLVR REVQLLQESD RHPNVLRYFC TERGPQFHYI BACU011865/1-864 FEGRAVAVKR LLRECFGLVR REVQLLQESD RHPNVLRYFC TERGPQFHYI 701 750 bmy_21420T0/1-533 ALELCRASLR EYVEHLEPDG WGLEPGMALQ QLMAGLAHLH SLHIVHRDLK ENSP00000256797/1-974 ALELCRASLQ EYVENPDLDR GGLEPEVVLQ QLMSGLAHLH SLHIVHRDLK ENSTTRP00000004965/1-897 ALELCRASLR EYVEHPETDR WGLEPGMALQ QLMAGLAHLH SLHIVHRDLK ENSBTAP00000019220/1-925 ALELCRASLR EYVEHPEPDS WGLEPGMALQ QLMAGLGHLH SLHIVHRDLK BACU011865/1-864 ALELCRASLR EYVEHLEPDG WGLEPGMALQ QLMAGLAHLH SLHIVHRDLK 751 800 bmy_21420T0/1-533 PGNVLIAGPD SQGRGRVVLS DFGLCKKLPA GRCSFSLRSG VPGTEGWMAP ENSP00000256797/1-974 PGNILITGPD SQGLGRVVLS DFGLCKKLPA GRCSFSLHSG IPGTEGWMAP ENSTTRP00000004965/1-897 PGNVLITGPD SQGRGRVVLS DFGLCKKXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000019220/1-925 PGNVLIAGPD SQGLGRVVLS DFGLCKKLPA GRCSFSLRSG IPGTEGWMAP BACU011865/1-864 PGNVLIAGPD SQGRGRVVLS DFGLCKKLPA GRCSFSLRSG VPGTEGWMAP 801 850 bmy_21420T0/1-533 ELLQLLPPDS PTSAVDIFSA GCVFYYVLSS GSHPFGESLY RQANILAGSP ENSP00000256797/1-974 ELLQLLPPDS PTSAVDIFSA GCVFYYVLSG GSHPFGDSLY RQANILTGAP ENSTTRP00000004965/1-897 XXXXXXXXXX XTSAVDIFSA GCVFYYVLSS GSHPFGESLY RQANILAGSP ENSBTAP00000019220/1-925 ELLQVPPPDS PTSAVDIFSA GCVFYYVLSG GSHPFGESLY RQANILVGAP BACU011865/1-864 ELLQLLPPDS PTSAVDIFSA GCVFYYVLSS GSHPFGESLY RQANILAGSP 851 900 bmy_21420T0/1-533 CLAHLEEEAH DKVIAWNLVE AMLSPLPQAR PSAHQVLAHP FFWSRAKQLQ ENSP00000256797/1-974 CLAHLEEEVH DKVVARDLVG AMLSPLPQPR PSAPQVLAHP FFWSRAKQLQ ENSTTRP00000004965/1-897 CLAHLEEEAH DKVVAWNLVE AMLSPLPQAR PSAHQVLAHP FFWSRAKQLQ ENSBTAP00000019220/1-925 CLAHLEEEAH DQVVARNLVE AMLSPLPQAR PSAHQVLAHP FFWSRAKQLQ BACU011865/1-864 CLAHLEEEAH DKVVAWDLVE AMLSPPPQAR PSAQQVLAHP FFWSRAKQLQ 901 950 bmy_21420T0/1-533 FFQDVSDWLE KEPEQGPLVT ALEAGGSEVV RGDWHKHISV PLQTDLKRFR ENSP00000256797/1-974 FFQDVSDWLE KESEQEPLVR ALEAGGCAVV RDNWHEHISM PLQTDLRKFR ENSTTRP00000004965/1-897 FFQDASDWLE KEPEQGPLVT ALEAGGAEVV RSDWHKHISV PLHTDLKRFR ENSBTAP00000019220/1-925 FFQDVSDWLE KEPEQGPLVM ALEAGGSEVV RSDWHKHISV PLQTDLRRFR BACU011865/1-864 FFQDVSDWLE KEPEQGPLVT ALEAGGSEVV RGDWHKHISV PLQTDLKKFR 951 1000 bmy_21420T0/1-533 SYKGTSVRDL LRAVRNKKHH YRELPDEVRR ALGPVPDSFV QYFTNRFPRL ENSP00000256797/1-974 SYKGTSVRDL LRAVRNKKHH YRELPVEVRQ ALGQVPDGFV QYFTNRFPRL ENSTTRP00000004965/1-897 SY-GTSVRDL LRAVRNK--- ---------- ---------- ---------- ENSBTAP00000019220/1-925 SYKGTSVRDL LRAVRNKKHH YRELPEEVRR TLGSVPDSFV QYFTNRFPRL BACU011865/1-864 SYKGTSVRDL LRAVRNKKHH YRELPDEVRR ALGPVPDSFV QYFTNRFPRL 1001 1050 bmy_21420T0/1-533 LLHTHRAMRS CASEGLFLPY YPPASGAQGL SPGAAGS ENSP00000256797/1-974 LLHTHRAMRS CASESLFLPY YPPDSEARRP CPGATGR ENSTTRP00000004965/1-897 ---------- ---------- ---------- ------- ENSBTAP00000019220/1-925 LLHTHGAMRS CASESLFLPY YPPATGVRGP SPGAAGS BACU011865/1-864 LLHTHRAMRS CASEGLFLPY YLPASGAQGL SPGAAGS