KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:11 2014 Check: 00 .. Name: ENSP00000373565/1-1179 Len: 1311 Check: 886 Weight: 1.00 Name: ENSBTAP00000019225/1-1181 Len: 1311 Check: 2612 Weight: 1.00 Name: ENSTTRP00000014401/1-1158 Len: 1311 Check: 9274 Weight: 1.00 Name: bmy_07594T0/1-1251 Len: 1311 Check: 5614 Weight: 1.00 Name: BACU001474/1-1182 Len: 1311 Check: 2403 Weight: 1.00 // 1 50 ENSP00000373565/1-1179 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019225/1-1181 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014401/1-1158 ---------- ---------- ---------- ---------- ---------- bmy_07594T0/1-1251 MACGWPE--- ----W---PG LGLVRAV--- ---GCRGEQK APIPRRPSPW BACU001474/1-1182 -MQPWPQQLR EEQAWVQVEG LELAMALEQL QSEGLEALRT QDRPNASVSV 51 100 ENSP00000373565/1-1179 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019225/1-1181 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014401/1-1158 ---------- ---------- ---------- ---------- ---------- bmy_07594T0/1-1251 TGGPFTLCAR PRSFPPDETP GLPCGKDFRW RPLAREPTRA LRAVPGGFDA BACU001474/1-1182 AQGPFTLCAR PRSFPPDETP GLPCGKDFRW RPL------- ---------- 101 150 ENSP00000373565/1-1179 ---------- ---------- -----MARRS QSSSQGDNPL APGYLPPHYK ENSBTAP00000019225/1-1181 ---------- ---------- -----MARRS QSSSQGDNPL APGYLPPHYK ENSTTRP00000014401/1-1158 ---------- ---------- -----MARRS QSSSQGDNPL APGYLPPHYK bmy_07594T0/1-1251 VSEVRGQLPK RGIPAESSAW LPGPDMARRS QSSSQGDNPL APGYLPPHYK BACU001474/1-1182 ---------- ---------- LPGPDMARRS QSSSQGDNPL APGYLPPHYK 151 200 ENSP00000373565/1-1179 EYYRLAVDAL AEGGSEAYSR FLATEGAPDF LCPEELEHVS RHLRPPQYVT ENSBTAP00000019225/1-1181 EYYRLAVDAL AEGGPEAYSR FLASEGAPAF LCPEELEHVS RHLRPPQHVA ENSTTRP00000014401/1-1158 EYYRLAVDAL AEGGPEAYSS FLASEGAPAF LCPEELEHVS RHLRAPQHVA bmy_07594T0/1-1251 EYYRLAVDAL AEGGPEAYSR FLASEGAPAF LCPEELEHVS RHLRAPQHVA BACU001474/1-1182 EYYRLAVDAL AEGGPEAYSR FLASEGAPAF LCPEELEHVS RHLRAPQHVA 201 250 ENSP00000373565/1-1179 REPPEGSLLD VDMDGSSGTY WPVNSDQAVP ELDLGWPLTF GFQGTEVTTL ENSBTAP00000019225/1-1181 PEPPDGSPPN LDFDGSSGTY WPVNSDQAVP ELDLGWPLTF GFQGTEVTTL ENSTTRP00000014401/1-1158 LEPPESSPPN MDFDGSSGTY WPVNSDQAVP ELDLGWPLTF GFQGTEVTTL bmy_07594T0/1-1251 LEPPEGSPPN MDFDGSSGTY WPVNSDQAVP ELDLGWPLTF GFQGTEVTTL BACU001474/1-1182 LEPPEGSPPN MDFDGSSGTY WPVNSDQAVP ELDLGWPLTF GFQGTEVTTL 251 300 ENSP00000373565/1-1179 VQPPPPDSPS IKDEARRMIR SAQQVVAVVM DMFTDVDLLS EVLEAAARRV ENSBTAP00000019225/1-1181 VQPPPPDSPS IKDEARRMIR SAQQVVAVVM DMFTDVDLLS EVLEAAARRV ENSTTRP00000014401/1-1158 VQPPPPDSPC IKDEARRMIR SAQQVVAVVM DMFTDVDLLS EVLEAAARRV bmy_07594T0/1-1251 ---------- ---------- ----VVAVVM DMFTDVDLLS EVLEAAARRV BACU001474/1-1182 VQPPPPDSPC IKDEARRMIR SAQQVVAVVM DMFTDVDLLS EVLEAAARRV 301 350 ENSP00000373565/1-1179 PVYILLDEMN AQHFLDMADK CRVNLQHVDF LRVRTVAGPT YYCRTGKSFK ENSBTAP00000019225/1-1181 PVYILLDEMN AQHFLDMADK CRVNLHHVDF LRVRTVAGPT YYCRTGKSFK ENSTTRP00000014401/1-1158 PVYILLDEVN AQHFLDMADK CHINLHHVDF LRVRTVADTT YYCRTGKSFK bmy_07594T0/1-1251 PVYILLDEMN AQHFLDMADK CHINLHHVDF LRVRTVAGPT YYCRTGKSFK BACU001474/1-1182 PVYILLDEMN AQHFLDMADK CHINLHHVDF LRVRTVAGPT YYCRTGKSFK 351 400 ENSP00000373565/1-1179 GHVKEKFLLV DCAVVMSGSY SFMWSFEKIH RSLAHVFQGE LVSSFDEEFR ENSBTAP00000019225/1-1181 GHVKEKFLLV DCAVVMSGSY SFMWSFEKIH RSLAHVFQGE LVSSFDEEFR ENSTTRP00000014401/1-1158 GHXXXXXXXX XXXXXXXXXX XFMWSFEKIH RSLAHVFQGE LVSSFDEEFR bmy_07594T0/1-1251 GHVKEKFLLV DCAVVMSGSY SFMWSFEKIH RSLAHVFQGE LVSSFDEEFR BACU001474/1-1182 GHVKEKFLLV DCAVVMSGSY SFMWSFEKIH RSLAHVFQGE LVSSFDEEFR 401 450 ENSP00000373565/1-1179 ILFAQSEPLV PSAAALARMD AYALAPYAGA GPLVGVPGVG APTPFSFPKR ENSBTAP00000019225/1-1181 ILFAQSEPLV PSAGALARMD TYALAPYAGA GPLMGSQMPG APTPFSFPKR ENSTTRP00000014401/1-1158 ILFAQSEPLV PSAGALARMD AYALAPYAGA GPLMGGQVTG ALTPFSLPKR bmy_07594T0/1-1251 ILFAQSEPLV PSAGALARMD AYALAPYAGA GPLMGGQVTG ASTPFSLAKR BACU001474/1-1182 ILFAQSEPLV PSAGALARMD AYALAPYTGA GPLMGGHVTG AATPFSLPKR 451 500 ENSP00000373565/1-1179 AHLLFPPPRE EGLGFPSFLD PDRHFLSAFR REEPPRMPGG ALEPHAGLRP ENSBTAP00000019225/1-1181 AHLLFPPPRE EGLGFPSFLD PDRHFLSAFR REESSRMPGG ALEPHTGLRP ENSTTRP00000014401/1-1158 AHLLFPPPRE EGLGFPSFLD PDRHFLSALR REESLRMPGG ALEPHTGLWP bmy_07594T0/1-1251 AHLLFPPPRE EGLGFPSFLD PDRHFLSALR REESPRMPGG ALEPRAGLWP BACU001474/1-1182 AH-LFPPPRE EGLGFPSFLD PDRHFLSALR REESPRMPGG ALEPHAGLWP 501 550 ENSP00000373565/1-1179 LSRRLEAEAG PAGELAGARG FFQARHLEMD AFKRHSFAT- EGAGAVENFA ENSBTAP00000019225/1-1181 LSRRLDAEAG PGGELSGPRG FFQARHLEMD AFKRYSYAAA DGAGAVENLA ENSTTRP00000014401/1-1158 LSRHLDTEAG PGGELLGPRG FFQARHQEMD AFKRHSYAAA DGTGAVENFA bmy_07594T0/1-1251 LSRHLDAEAG PGGELLGPRG FFQARHPEMD AFKRHSYAAV DGAGAVENFA BACU001474/1-1182 LSRHLDAEAG PGGELLGPRG FFQARHPEMD AFKRHSYAAA DGAGAVENFA 551 600 ENSP00000373565/1-1179 AARQVSRQTF LSHGDDFRFQ TSHFHRDQLY QQQYQWDPQL TPARPQGLFE ENSBTAP00000019225/1-1181 AARQVSRQTF LSHGDDLRFQ TSHFHRDQLY QQHYQWDPQL APTRPQGLFE ENSTTRP00000014401/1-1158 AARQVSRQTF LGYGDDLRFQ TSHFHRDQLY QQHYQWDPQL APARPQGPFE bmy_07594T0/1-1251 AARQVSRQTF LSHGDDFRLQ TSHFHRDQLY QQCYQWDPQL APARPQGLFE BACU001474/1-1182 AARQVSRQTF LSHGDDFRLQ TSHFHRDQLY QQRYQWDPQL APARPQGLFE 601 650 ENSP00000373565/1-1179 KLRGGRAGFA DPDDFTLGAG PRFPELGPDG HQRLDYVPSS ASREVRHGSD ENSBTAP00000019225/1-1181 KLRAGRPGFP DHDEFMLGTG PRFPELGLDG HQRLDYVPSS ASREVRHGSD ENSTTRP00000014401/1-1158 KLRAGCPGFA DHDDFTLGAG QRFPELGPDG HQRLDYVPSS ASREVRHGSD bmy_07594T0/1-1251 KLRAGRPGFA DHDDLALGAG QRFPELGPDG HQRLDYVPSS ASREVRHGSD BACU001474/1-1182 KLRARRPGFA DHDDFAPGAG QRFPELGPDG HQRLDYVPSS ASREVRHGSD 651 700 ENSP00000373565/1-1179 PAFAPGPRGL EPSGAPRPNL TQRFPCQAAA RPGPDPAPEA EPERRGGPEG ENSBTAP00000019225/1-1181 PAFGPGPRGL EPGGAPRPNL GQRFSCQAMT RLGPEMAPEP EPEHRGGPEG ENSTTRP00000014401/1-1158 PAFGPRLRGL EPAGAPSPNL GQRFPCQAVT RLGPETVPKP EPERRGRPEG bmy_07594T0/1-1251 PALGPGPHAL EPAGAPRPNL GQRFPCQAVT RLGPETVPKP EPERRGRPEG BACU001474/1-1182 PALGPGPRAL DPAGAPRPNL GQRFPCQAVT RLGPETVPKP EPERRGRPEG 701 750 ENSP00000373565/1-1179 RAGLRRWRLA SYLSGCHGED GGDDGLPAPM EAEAYEDDVL APGGRAPAGD ENSBTAP00000019225/1-1181 RAGLRHWRLT SYLSGCHSED AGDEGLPTPM ETEAYDDDVL VSGGRATAGD ENSTTRP00000014401/1-1158 RAGLRHWRLA SYLSGCHGED AGDEGLPAPM EAEAYEDDVL VSGGRVAAGD bmy_07594T0/1-1251 RAGLRHWRLA SYLSGCHGED AGDEGLPAPM EAEAYEDDVL VSGGRVAAGD BACU001474/1-1182 RAGLRHWRLA SYLSGCHGED AGDEGLPAPM EAEAYEDDVL VSGGRVAAGD 751 800 ENSP00000373565/1-1179 LLPSAFRVPA AFPTKVPVPG PGS-GGNGPE REGPEEPGLA KQDSFRSRLN ENSBTAP00000019225/1-1181 LLPSAFRVPA PFPGKGPAPG SGSGGGDGPE REGLEEVGLA KQDSFRSRLN ENSTTRP00000014401/1-1158 LLTSSFRVPT SFAP------ --SGGGDSSE PEGL-QAGLA KQDTFRLRPN bmy_07594T0/1-1251 LLTSSFRAPA SFPS------ SGSGGGDGPE PEGL-EAGLA KQDSFRLRPN BACU001474/1-1182 LLTSSFRAPA SFPS------ SGSGGGDGPE PEGL-EAGLA KQDSFRLRPN 801 850 ENSP00000373565/1-1179 PLVQRSSRLR SSLIFSTSQA EGAAGAAAAT -EKVQLLHKE QTVSETLGPG ENSBTAP00000019225/1-1181 PLIQRSSRLR SSLIFSASQG EGTGGPTGAS TEKVQLLHKE QTVSEMLGPG ENSTTRP00000014401/1-1158 PLIQRSSRLR SSLIFSASQA EGTGGAAAAT AE------KE QVVSEMPASG bmy_07594T0/1-1251 PLIQRSSRLR SSLIFSASQA EGTGGGAAAT TEKGQLPPKE QVVSEMPASG BACU001474/1-1182 PLIQRSSRLR SSLIFSASQA EGTGGAAAAT TEKGQLPPKE QVASEMPASG 851 900 ENSP00000373565/1-1179 GEAVRSAAST KVAELLEKYK GPARDPGGGA GAITVASHSK AVVSQAWREE ENSBTAP00000019225/1-1181 NEAVRSAAST KVAELLEKYK GPSRDPGGVG TAVTAASHSK AVVSQAWREE ENSTTRP00000014401/1-1158 GKAMRSAVST KVAELLEKYK GPTRDAGGMG AAVTVASHSK AILSQAWREE bmy_07594T0/1-1251 GEAVRSAVST KVAELLEKYK GPTRDAGGVG AAVTVASHSK AVLSQAWREE BACU001474/1-1182 GEAMRSAVST KVAELLEKYK GPTRDAGGVG AAVTVASHSK AVLSQAWRGE 901 950 ENSP00000373565/1-1179 VAAPGAV-GG ERRSLESCLL DLRDSFAQQL HQEAERQPGA ASLTAAQLLD ENSBTAP00000019225/1-1181 VSAPGGGSGS ERRSLESCLL DLRESFAQQL HQEAERQPGA ATLASTQLLD ENSTTRP00000014401/1-1158 VSAPGGG-GS EHRSLESCLL DLRDSFTQQL HQEAKRQPGA AALTATQLLD bmy_07594T0/1-1251 VSAPGGG-GS ERRSLESCLL DLRDSFTQQL HQEAERQPGA AALTATQLLD BACU001474/1-1182 ASAPGG---- ---------- ---------- ---------- ---------- 951 1000 ENSP00000373565/1-1179 TLGRS--GSD RLPSRFLSAQ SHSTSPQGLD SPLPLEGSGA HQVLHNESKG ENSBTAP00000019225/1-1181 TLGRGSSGTD RLPSRFLSTQ GHSTSPQGRD SP-PPEGPGG QQ---SEPKG ENSTTRP00000014401/1-1158 TLGGSSGGTD RLPSCFLSTQ GRSTSPQGRD SP-PPEGPGA HQPPHSEPKG bmy_07594T0/1-1251 TLGGSSGGAD RLPSRFPSAQ GRSASPRGRD SP-PPERPGA HQTPHSEPKG BACU001474/1-1182 ---------- ---------- -------GRD SP-PPERPGA HQTPHSEPKG 1001 1050 ENSP00000373565/1-1179 SPTSAYPERK GSPTPGFSTR RGSPTTGFIE QKGSPTSAYP ERRGSPVPPV ENSBTAP00000019225/1-1181 SPTLAYPERK GSPTPGFPTR RGSPTAGFTE QKGSPTSAYP ERRGSPVPPV ENSTTRP00000014401/1-1158 IPTSAYPEQK GSPTAGFPSC RDRPTTGFTE QKGSPASAYP EHKGSPVP-- bmy_07594T0/1-1251 NPTSAYPEGK GSPTAGLAGR RDRPTTGFTE QKGSPASACP ERRGSPGP-- BACU001474/1-1182 NPTSAYPERK GSPTAGLPGH RDRPTTGFTE QKGSPASACP ERRGSPGP-- 1051 1100 ENSP00000373565/1-1179 PERRSSPVPP VPERRGSLTL TISGESPKAG PAEEGPSGPM EVLRKGSLRL ENSBTAP00000019225/1-1181 PERRGSPVPP VPERRGSLTL PFSGESPKAG PTEEAVGGPM EVLRKGSARL ENSTTRP00000014401/1-1158 ------PVPP VPEHRGSLPL PFSGESPKTG PTEEAPGGPM EILRRGSARL bmy_07594T0/1-1251 ------PGPP VPERMGSLTP PFSGESPKTG PTEEAPGGPM EILRKGSARL BACU001474/1-1182 ------PGPP VPERMGSLTL PFSGESPKTG PTEEAPGGPM EILRKGSVRL 1101 1150 ENSP00000373565/1-1179 RQLLSPKGER RMEDEGGFPV PQENGQPESP RRLSLGQGDS TEAAT-EERG ENSBTAP00000019225/1-1181 RQLMSPKGER RADDEGSFPT PQENGQPESP QWPSLVRVDS TEAAA-EERG ENSTTRP00000014401/1-1158 RQLLNPKGER RVEDEGSFPV PQENGQPESP RRPSPSRADS TDAATGDERG bmy_07594T0/1-1251 RQLLSPKGER RAEDEGSFPV PQENGQPESP RRPSPSRADS TEAATGDERG BACU001474/1-1182 RQLLSPKGER RAEDEGSFPV PQENGQPESP RRPSPSRADS TEAATGDERG 1151 1200 ENSP00000373565/1-1179 PRARLSSATA NALYSSNLRD DTKAILEQIS AHGQKHRAVP APSPGPTHNS ENSBTAP00000019225/1-1181 PRARVASATA NALYSSNLRD DTKAILEQIS AHGQKHRGVP APGPTPAHSS ENSTTRP00000014401/1-1158 PRGCVASATA NALYSSNLRD DTKAILEQIS AHGQKHRGGP A--PTPAQSS bmy_07594T0/1-1251 PRARVASATA NALYSSNLRD DTKAILEQIS AHGQKHRGVP A--PTPTQSS BACU001474/1-1182 PQARVASATA NALYSSNLRD DTKAILEQIS AHCQKHRGVP A--PTLTQSS 1201 1250 ENSP00000373565/1-1179 PELGRPPAAG VLAPDMSDKD KCSAIFRSDS LGTQGRLSRT LPASAEERDR ENSBTAP00000019225/1-1181 PELGHSPVAG GLAPDMSDKD KCSAIFRSDS LGTQGRLSRT LPAGAEERDR ENSTTRP00000014401/1-1158 PELGHPPAAG GRAPDMSDKD ECSAICLADR LGTQGRLNRT LPASAAERDR bmy_07594T0/1-1251 PELGHPPAAG GLAPDMSEKN KCSAIFLSDS RETQGRLNRT LPASAEERDR BACU001474/1-1182 PELGHPPAAG GLAPDMSEKN KCSAIILSDS LETQGRLNHA LPASAEERDR 1251 1300 ENSP00000373565/1-1179 LLRRMESMRK EKRVYSRFEV FCKKEEASSP GAGEGPAEEG TRDSKVGKFV ENSBTAP00000019225/1-1181 LLRRMESMRK EKRVYSRFEV FCKKEEPGAL GAAEGPAEED ARDSKVGKFM ENSTTRP00000014401/1-1158 LLHRMESMRK EKRVYSRFEV FCKKEEPGGP GAGEGPA-ED TRDSKVGKFM bmy_07594T0/1-1251 LLHRMESMRK EKRVYSRFEV FCKREEPGGP GAGEGPA-ED TRDSKVGKFM BACU001474/1-1182 LLRRMESMRK EKRVYSRFEV FCKKEEPGGP GAGEGPA-ED TRDSKVGKFM 1301 1350 ENSP00000373565/1-1179 PKILGTFKSK K ENSBTAP00000019225/1-1181 PKILGTFKSK K ENSTTRP00000014401/1-1158 PKLLGTFKSK K bmy_07594T0/1-1251 PKLLGTFKSK K BACU001474/1-1182 PKLLGTFKSK K