KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:12 2014 Check: 00 .. Name: bmy_01603T0/1-526 Len: 574 Check: 4190 Weight: 1.00 Name: BACU003328/1-314 Len: 574 Check: 5201 Weight: 1.00 Name: ENSTTRP00000001453/1-394 Len: 574 Check: 8811 Weight: 1.00 Name: ENSP00000215812/1-400 Len: 574 Check: 3573 Weight: 1.00 Name: ENSBTAP00000019231/1-400 Len: 574 Check: 2454 Weight: 1.00 // 1 50 bmy_01603T0/1-526 LAKEEAPGAT PRSGGKRLRL VRTTDQAWPL PAVASTPPAS PSTMGGRVGD BACU003328/1-314 ---------- ---------- ---------- ---------- ---MGGRVGD ENSTTRP00000001453/1-394 ---------- ---------- ---------- ---------- ---MSGRVGD ENSP00000215812/1-400 ---------- ---------- ---------- ---------- ---MSGRVGD ENSBTAP00000019231/1-400 ---------- ---------- ---------- ---------- ---MSGRVGD 51 100 bmy_01603T0/1-526 LSPKQADTLA KTALEEKEAR RKQSLSLGPR LSVRTSSINV SLPSSEKMSR BACU003328/1-314 LSPKQAETLA KVGAEDAD-- ---------- ---------- ---------- ENSTTRP00000001453/1-394 LSPKQAETLA KF-ENVQDV- ---------- ---------- ---------- ENSP00000215812/1-400 LSPKQAETLA KFRENVQDV- ---------- ---------- ---------- ENSBTAP00000019231/1-400 LSPKQAESLA KFRENVQDV- ---------- ---------- ---------- 101 150 bmy_01603T0/1-526 MCCLPCPTQM TISFCAGSEN FDLQKSEAMF HK-------- ---------- BACU003328/1-314 ---------- -------AQN FDLQKSEAMF HKYMEFRKTM DIDHI----- ENSTTRP00000001453/1-394 LPALPNPDDY FLLRWL-AQN FDLQKSEAMF HKYMEFRKTM DIDHI-DWQP ENSP00000215812/1-400 LPALPNPDDY FLLRWLRARN FDLQKSEALL RKYMEFRKTM DIDHILDWQP ENSBTAP00000019231/1-400 LPALPNPDDY FLLRWLRARN FDLQKSEAML RKYMEFRKTM DIDHILEWQP 151 200 bmy_01603T0/1-526 --VIQKYMPG ALCGYDRDGC PVWYDIIRPL DPKGLLFSVT KQDLLKTKMR BACU003328/1-314 --VIQKYMPG ALCGYDHDGC PVWYDIIGPL DPKGLLFSVT KQDLLKTKMR ENSTTRP00000001453/1-394 PEVIQKYMPG ALCGCDHVGC PVWYDIVGLL DPKGLLFSVT KQDLLKTKMR ENSP00000215812/1-400 PEVIQKYMPG GLCGYDRDGC PVWYDIIGPL DPKGLLFSVT KQDLLKTKMR ENSBTAP00000019231/1-400 PEVIQKYMPG GLCGYDRDGC PVWYDIIGPL DPKGLLFSVT KQDLLKTKMR 201 250 bmy_01603T0/1-526 DCECILCECD LQTERLGRKI ETIVMIFDCE GLGLKHFWKP LVEVSQERVA BACU003328/1-314 DCECILRECD LQTERLGRKI ETIVMIFDCE GLGLKHFWKP LVEVYQEFFD ENSTTRP00000001453/1-394 DCEGILHKCD LQT--LGRKI ETIVMIFDCE GLGLKHFWKP LVEVYQEFFG ENSP00000215812/1-400 DCERILHECD LQTERLGKKI ETIVMIFDCE GLGLKHFWKP LVEVYQEFFG ENSBTAP00000019231/1-400 DCERILHECD LQTERLGRKI ETIVMIFDCE GLGLKHFWKP LVEVYQEFFG 251 300 bmy_01603T0/1-526 QWNYLFPIIL AY--ISPATK LFPVEYNLMK PFLSEDTHRK IIVLGNNHPS BACU003328/1-314 LLEENYPETL KFMLIVED-- ---------- ---------- ---------- ENSTTRP00000001453/1-394 LLEENYPETL KFMLIVKATK LFPVGYNLMK PFLSEDTHRK IIMLGN---- ENSP00000215812/1-400 LLEENYPETL KFMLIVKATK LFPVGYNLMK PFLSEDTRRK IIVLGN---- ENSBTAP00000019231/1-400 LLEENYPETL KFMLIVKATK LFPVGYNLMK PFLSEDTRRK IVVLGS---- 301 350 bmy_01603T0/1-526 TPLPTDNWKE GLLKLISPEE LPAQFGGALT DPDGNPKYLT K--------- BACU003328/1-314 ------NWKE GLLKLISPEE LPAQSGGALT DSDGDPKYLT K--------- ENSTTRP00000001453/1-394 ------SWKE GLLKLISPEE LPAQFGGTLT NPDGNPKYLT KIKCGGEIPK ENSP00000215812/1-400 ------NWKE GLLKLISPEE LPAQFGGTLT DPDGNPKCLT KINYGGEIPK ENSBTAP00000019231/1-400 ------NWKE GLLKLISPEQ LPAQFGGTLT DPDGNPKCLT KINYGGEIPK 351 400 bmy_01603T0/1-526 ---------- -------NSR SSSHQVEYEI LFPGCVLRWQ FSSDGADIGF BACU003328/1-314 -----DQVKT QYEHLVQISR SSSHQVEYEI LFPGCVLRCQ FSSDSADIGF ENSTTRP00000001453/1-394 SMYVQDQVKT QYEHLVQISR GSSHQVEYEI LFPGCVLRWQ FSSDSEDIGF ENSP00000215812/1-400 SMYVRDQVKT QYEHSVQINR GSSHQVEYEI LFPGCVLRWQ FSSDGADIGF ENSBTAP00000019231/1-400 SMYVRDQVKT QYEHSAQISR GSSHQVEYEI LFPGCVLRWQ FASDGGDIGF 401 450 bmy_01603T0/1-526 GVFLKTKVGE WQRAGEMTEV QRSQRYNAHL VPEDGSLTCT EAGALLRNGS BACU003328/1-314 GVFLKTKVGE WQRAGEMTEV QRSQRYNAHL VPEDGSLTCT EAGVYVL--- ENSTTRP00000001453/1-394 GVFLKTTMGE WQWAGLMTEV QLNQRYNAHL VPEDGRLTCT EAGVYVL--- ENSP00000215812/1-400 GVFLKTKMGE RQRAGEMTDV LPSQRYNAHM VPEDGNLTCS EAGVYVL--- ENSBTAP00000019231/1-400 GVFLKTKMGE RQRAAEMTEV LASQRYNAHM VPEDGSLTCT EAGVYVL--- 451 500 bmy_01603T0/1-526 SHGEGNRSRG NLVQLGKHNR WEHSPFSPMA RAGRRECEAR PNYPSVHLSP BACU003328/1-314 ---------- ---------R FDNT------ ---------- --YSFVH--- ENSTTRP00000001453/1-394 ---------- ---------R FDNT------ ---------- --YSFVH--- ENSP00000215812/1-400 ---------- ---------R FDNT------ ---------- --YSFVH--- ENSBTAP00000019231/1-400 ---------- ---------R FDNT------ ---------- --YSFVH--- 501 550 bmy_01603T0/1-526 QMSCALTTPI ALSTPRRSAS QRRWCSRMRA CRNTTRSSPL SRQLPHFPET BACU003328/1-314 ---------- ---------- -------TKK VSYTV----- ---------- ENSTTRP00000001453/1-394 ---------- ---------- -------TKK VSFTV-VLLL DEGMQK-DKE ENSP00000215812/1-400 ---------- ---------- -------AKK VSFTVEVLLP DEGMQKYDKE ENSBTAP00000019231/1-400 ---------- ---------- -------AKK VSFTVEVLLP DEGMQKYDKE 551 600 bmy_01603T0/1-526 PDPLLSVYIS YSSPRNCSVV LLTL BACU003328/1-314 ---------- ---------- ---- ENSTTRP00000001453/1-394 LTPVW----- ---------- ---- ENSP00000215812/1-400 LTPV------ ---------- ---- ENSBTAP00000019231/1-400 LTPV------ ---------- ----