KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:13 2014 Check: 00 .. Name: ENSTTRP00000015389/1-266 Len: 430 Check: 7632 Weight: 1.00 Name: ENSBTAP00000019248/1-351 Len: 430 Check: 8121 Weight: 1.00 Name: ENSP00000413074/1-328 Len: 430 Check: 4299 Weight: 1.00 Name: bmy_10935T0/1-353 Len: 430 Check: 6465 Weight: 1.00 Name: BACU004930/1-347 Len: 430 Check: 1036 Weight: 1.00 // 1 50 ENSTTRP00000015389/1-266 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019248/1-351 ---------- ---------- ---------- ---------- ---------- ENSP00000413074/1-328 ---------- ---------- ---------- ---------- ---------- bmy_10935T0/1-353 MSGARRAVPG TSKAVKASCT YPRAAREVLL RALLSLVLCT APVRRSRLRG BACU004930/1-347 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015389/1-266 --MMEAEEQQ PWK------- ---------- ------TTFY SELPKVELHA ENSBTAP00000019248/1-351 --MMEAEEQ- PWK------- ---------- ------TTFY SKLPKVELHA ENSP00000413074/1-328 --MIEAEEQQ PCK------- ---------- ------TDFY SELPKVELHA bmy_10935T0/1-353 PMVREVRSDG PSRCFAARLT PAAYCGHVDC VREARVITFL QAFLSEELHA BACU004930/1-347 --MQVVK--- PSNC------ ---------- ------TKLY T-----ELHA 101 150 ENSTTRP00000015389/1-266 HLNGSISSNT IKKLIVKKTG LKIHYQMTMI DKGKKRTLEE CFQMFQIIHQ ENSBTAP00000019248/1-351 HLNGSISSST IRKLIAKKPD LKIHDQMTMI DKGEKRTLEE CLQMFQIIHL ENSP00000413074/1-328 HLNGSISSHT MKKLIAQKPD LKIHDQMTVI DKGKKRTLEE CFQMFQTIHQ bmy_10935T0/1-353 HLNGSISSNT IKKLIAKKPG LKIHYQMTMI DKGKKRTLEE ---------- BACU004930/1-347 HLNGSISSNT IKKLIAKKPG LKIHYQMTMI DKGKKRTLEE CFQMFQIIHQ 151 200 ENSTTRP00000015389/1-266 LTTGPEDILM VTKDVIKEFA DDGVKYLELR STP-RENATX XXXXXXXXXX ENSBTAP00000019248/1-351 LTTTPEDVLM VTKDVIKEFA DDGVKYLELR STPRGEDATG MTKKTYVESI ENSP00000413074/1-328 LTSSPEDILM VTKDVIKEFA DDGVKYLELR STPRRENATG MTKKTYVESI bmy_10935T0/1-353 ---------- ---------- ---------- ---------- ---------- BACU004930/1-347 LTTSPEDILM VTKDVIKEFA DDGVKYLELR STP-RENATG MTKKTYVESV 201 250 ENSTTRP00000015389/1-266 XXXXXXXXXX XXXXXXXYLI SVDRRGGPSV AKETVKLAEE FFLSTEDTVL ENSBTAP00000019248/1-351 LEGIKQSKEE NVDIDVRYLI SIDRRGGSSA AKEAVKLAEE FFLSAEDTVL ENSP00000413074/1-328 LEGIKQSKQE NLDIDVRYLI AVDRRGGPLV AKETVKLAEE FFLSTEGTVL bmy_10935T0/1-353 ---------- -------YLI SVDRRGGPSV AKETVKLAEE FFLSTEDTVL BACU004930/1-347 LEGIKQSKQE NIDIDVRYLI SVDRRGGPSV AKETVKLAEE FFLSTEDTVL 251 300 ENSTTRP00000015389/1-266 GLDLSGDPTV GQAKDFLEPL LEAKKSGLKL ALHLSEIPNQ KKETQVLLDL ENSBTAP00000019248/1-351 GLDLSGDPSA GQAKDFLEPL LEAKKSGLKL ALHLSEIPNQ KTETQVLLNL ENSP00000413074/1-328 GLDLSGDPT- ---------- ---------- ------IPNQ KKETQILLDL bmy_10935T0/1-353 GLDLSGDPTA GQAKDFLEPL LEAKKSGLKL ALHLSEIPNQ KKETQVLLDL BACU004930/1-347 GLDLSGDPTA GQAKDFLEPL LEAKKSGLKL ALHLSEIPNQ KKETQVLLGL 301 350 ENSTTRP00000015389/1-266 LPDRIGHGTF LNSLEGGSLD LVDFVRQHQI PLG------- ---------- ENSBTAP00000019248/1-351 FPDRIGHGTF LSSSEEGSPD LVDFVRQHQI PLELCLTSNV KSQTVPAYDQ ENSP00000413074/1-328 LPDRIGHGTF LNSGEGGSLD LVDFVRQHRI PLELCLTSNV KSQTVPSYDQ bmy_10935T0/1-353 LPDRIGHGTF LNSLEGGSLD LVNFVRQHQI PLELCLTSNV KSQTVPSYNQ BACU004930/1-347 LPDRIGHGTF LNSLEGGSLD LVDFVRQHQI PLELCLTSNV KSQTVPSYNQ 351 400 ENSTTRP00000015389/1-266 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019248/1-351 HHFGFWYSVA HPAVICTDDK GVFATRLSQE YQLVAETFHL TQSQVWDLSY ENSP00000413074/1-328 HHFGFWYSIA HPSVICTDDK GVFATHLSQE YQLAAETFNL TQSQVWDLSY bmy_10935T0/1-353 HHFGFWYSIV HPAVICTDDK GVFATHLSQE YQLAAETFHL TQSQVWDLSY BACU004930/1-347 HHFGFWYSIV HPAVICTDDK GVFATHLSQE YQLAAETFHL TQSQVWDLSY 401 450 ENSTTRP00000015389/1-266 ---------- --KAGFRSSR Q--------- ENSBTAP00000019248/1-351 ESISYIFASD STKADLRKKW SHLKP---HF ENSP00000413074/1-328 ESINYIFASD STRSELRKKW NHLKPRVLHI bmy_10935T0/1-353 ESISYIFASD STKSDLRKKW NHLKPKVFHF BACU004930/1-347 ESISHIFASD STKSDLRKKW NHLKPKVSHF