KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:15 2014 Check: 00 .. Name: ENSP00000382237/1-368 Len: 400 Check: 1701 Weight: 1.00 Name: ENSBTAP00000019258/1-368 Len: 400 Check: 2107 Weight: 1.00 Name: bmy_01395T0/1-352 Len: 400 Check: 1868 Weight: 1.00 Name: BACU003419/1-262 Len: 400 Check: 5776 Weight: 1.00 Name: ENSTTRP00000005868/1-368 Len: 400 Check: 4350 Weight: 1.00 // 1 50 ENSP00000382237/1-368 MEGLVFLNAL ATRLLFLLHS LVGVWRVTEV KKEPRYWLLA LLNLLLFLET ENSBTAP00000019258/1-368 MEGLVLLNAL ATRLLFVLHS LVGVWRVTVV KKEPWYWLLA LLNLLLFLET bmy_01395T0/1-352 ------METV AVKAHF---- ---------- -KKPVYK--- ---------- BACU003419/1-262 MEGLVLLNAL ATRLLFVLHS LVGVWRVTEV KKEPWYWLLA LLNLLLFLET ENSTTRP00000005868/1-368 MEGLVLLNAL ATRLLFVLHS LVGVWRVTEV KKEPWYWLLA LLNLLLFLET 51 100 ENSP00000382237/1-368 ALTLKFKRGR GYKWFSPAIF LYLISIVPSL WLLELHHETQ YCSIQAEGTS ENSBTAP00000019258/1-368 ALTLKFKRGR GYKWFSPAIF LYLISIVPSL WLLEMHHETQ YCSSQFGGLS bmy_01395T0/1-352 ---------- ----FSPAIF LYLISIVPSL WLLEMHHETQ YCSSQSEGMS BACU003419/1-262 ALTLKFKRGR GYKWFSPAIF LYLISIVPSL WLLEMHHETQ VC-------- ENSTTRP00000005868/1-368 ALTLKFQRGR GYKWFSPAIF LYLISIVPSL WLLEMHHETQ YCSSQSEGMS 101 150 ENSP00000382237/1-368 QNTSRKEDFN QTLTSNEQTS RADDLIETAK VFVNNLSTVC EKVWTLGLHQ ENSBTAP00000019258/1-368 QNTSRKENFN QTLLSAEHTN RADDLIATAK VFVSNLSTVC EKVWTLGLHQ bmy_01395T0/1-352 KNTSTKEDFN QTRLSTQQTN RADDLIETAK VFVNNLSTVC EKVWTLGLHQ BACU003419/1-262 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005868/1-368 KNTSTKEDFN QTLLSTEQTN RADDLIETAK VFVNNLSTVC EKVWTLGLHQ 151 200 ENSP00000382237/1-368 TFLLMLIIGR WLLPIGGGIT RDQLSQLLLM FVGTAADILE FTSETLEEQN ENSBTAP00000019258/1-368 TFLLMLIIGR WLLPIGSGIT RDQLSQLLLM FVGTAADILE FTSETLEEEN bmy_01395T0/1-352 TFLLMLIIGR WLLPIGGGIT RDQLSQLLLM FVGTAADILE FTSETLEEAN BACU003419/1-262 ---------- ---PFG---- ---------- ---------- ---------- ENSTTRP00000005868/1-368 TFLLMLIIGR WLLPIGGGIT RDQLSQLLLM FVGTAADILE FTSETLEEES 201 250 ENSP00000382237/1-368 VRNSPALVYA ILVIWTWSML QFPLDLA--- ---------- ---------- ENSBTAP00000019258/1-368 VRNSPALVYS ILVIWTWSML QFPLDLA--- ---------- ---------- bmy_01395T0/1-352 VRNSPALVYA ILVIWTWSML QFPLDLAESL PIVNERVTLM VDDLSPLHSV BACU003419/1-262 -KNSPALVYA ILVIWTWSML QFPLDLA--- ---------- ---------- ENSTTRP00000005868/1-368 VRNSPALVYA ILVIWTWSML QFPLDLA--- ---------- ---------- 251 300 ENSP00000382237/1-368 ---------V QNVVCPVSVT ERGFPSLFFC QYSADLWNIG ISVFIQDGPF ENSBTAP00000019258/1-368 ---------V QNVVCPVSMT TRGFSSRFFC QYSADLWNIG ISIFIQDGPF bmy_01395T0/1-352 LLFRISESYV QHVVCPVSMT TRGFPSRFFC QYSADLWNIG ISIFIQDGPF BACU003419/1-262 ---------V QHVVCPVSMT TRGFPSRFFC QYSADLWNIG ISIFIQDGPF ENSTTRP00000005868/1-368 ---------V QHVVCPVSMA TRGFPSRFFC QYSADLWNIG ISVLIQDGPF 301 350 ENSP00000382237/1-368 LVVRLILMTY FKVINQMLVF FAAKNFLVVV LQLYRLVVLA LAVRASLRSQ ENSBTAP00000019258/1-368 LVVRLILMTY FEVINQMLVF FAAKNFLVVV LQFYRLVVLA LDVRASLRSQ bmy_01395T0/1-352 LVVRLVLMTY FKVINQMLVF FAAKNFLVVV LQLYRLVVLA LVVHASLRSQ BACU003419/1-262 LVVRLILMTY FKVINQMLVF FAAKNFLVVV LQLYRLVALA LVVHASLRSQ ENSTTRP00000005868/1-368 LVVRLILMTY FKVINQMLVF FAAKNFLVVV LQLYRLVVLA LVVHASLRSQ 351 400 ENSP00000382237/1-368 SEGLKGEHGC RAQTSESGPS QRDWQNESKE GLAIPLRGSP VTSDDSHHTP ENSBTAP00000019258/1-368 RERLKGEHRC PDVPAECGVS PEAWPGSSME ALAIPLQASP VTSDDSHPTP bmy_01395T0/1-352 QERLKGEHRR PAVPAESGVS PGAWAGGSKE GLALPLQALL VTSDDSHLTP BACU003419/1-262 QERLKGEHRR PGVPAESGVS PGAWAGGSKE GLALPLQALP VTSDDSLQTP ENSTTRP00000005868/1-368 QERLKGEHRR PGVPAESGVS PGVWAGGSKE GLAIPLQALP VTSDDSPLTP