KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:15 2014 Check: 00 .. Name: bmy_00877T0/1-773 Len: 785 Check: 8273 Weight: 1.00 Name: ENSP00000379457/1-650 Len: 785 Check: 6931 Weight: 1.00 Name: ENSTTRP00000008840/1-636 Len: 785 Check: 3062 Weight: 1.00 Name: ENSBTAP00000019259/1-650 Len: 785 Check: 5276 Weight: 1.00 Name: BACU000281/1-655 Len: 785 Check: 6267 Weight: 1.00 // 1 50 bmy_00877T0/1-773 ------MLMM VDHYLNSEER EETSPEISCL Q------LAA INGVIPQENG ENSP00000379457/1-650 MASNMDREMI LADFQACTGI ENIDEAITLL EQNNWDLVAA INGVIPQENG ENSTTRP00000008840/1-636 MASNMDREMI LADFQACTGI ENIDEAITLL EQNNWDLVAA INGVIPQENG ENSBTAP00000019259/1-650 MTSNMDREMI LADFQACTGI ENIDEAITLL EQNNWDLVAA INGVIPQENG BACU000281/1-655 MASNMDREMI LADFQACTGI ENIDEAITLL EQNNWDLVAA INGVIPQENG 51 100 bmy_00877T0/1-773 ILRSDYGGEP ISGPAFDPAS HPAPAPAPAP SSSSAFRPVM PSRQIVERQP ENSP00000379457/1-650 ILQSEYGGET IPGPAFNPAS H--PASAPTS SSSSAFRPVM PSRQIVERQP ENSTTRP00000008840/1-636 ILRSDYGGEP ISGPAFDPAS HPAPAPAPAP SSSSAFRPVM PSRQIVERQP ENSBTAP00000019259/1-650 ILQSDYGGET ISGPAFDPAS H--PAPAPAP SSSSAFRPVM PSRQIVERQP BACU000281/1-655 ILRSDYGGEP ISGPAFDPAS HPAPAPAPAP SSSSAFRPVM PSRQIVERQP 101 150 bmy_00877T0/1-773 RMLDFRVEYR DRNVDVVLED SCTVGEIKQI LENELQIPVS KMLLKGWKTG ENSP00000379457/1-650 RMLDFRVEYR DRNVDVVLED TCTVGEIKQI LENELQIPVS KMLLKGWKTG ENSTTRP00000008840/1-636 RMLDFRVEYR DRNVDVVLED SCTVGEIKQI LENELQIPVS KMLLKGWKTG ENSBTAP00000019259/1-650 RMLDFRVEYR DRNVDVVLED SCTVGEIKQI LESELQIPMS KMLLKGWKTG BACU000281/1-655 RMLDFRVEYR DRNVDVVLED SCTVGEIKQI LENELQIPVS KMLLKGWKTG 151 200 bmy_00877T0/1-773 DVEDSMVLKS LHLPKNNSLY VLTPDLPPPS SSSHAGPFSA LQESLNQNFM ENSP00000379457/1-650 DVEDSTVLKS LHLPKNNSLY VLTPDLPPPS SSSHAG---A LQESLNQNFM ENSTTRP00000008840/1-636 DVEDSTVLKS LHLPKNNSLY VLTPDLPPPS SSSHAG---A LQESLNQNFM ENSBTAP00000019259/1-650 DVEDSTVLKS LHLPKNNSLY VLTPDLPPPS SSSHAG---A LQESLNQNFM BACU000281/1-655 DVEDSTVLKS LHLPKNNSLY VLTPDLPPPS SSSHAGPFSA LQESLNQNFM 201 250 bmy_00877T0/1-773 LIITHREVQR EYNLNFSGSS TIQEVKRNVY DLTSIPVRHQ LWEGWPSSAT ENSP00000379457/1-650 LIITHREVQR EYNLNFSGSS TIQEVKRNVY DLTSIPVRHQ LWEGWPTSAT ENSTTRP00000008840/1-636 LIITHREVQR EYNLNFSGSS TIQEVKRNVY DLTSIPVRHQ LWEGWPTSAT ENSBTAP00000019259/1-650 LIITHREVQR EYNLNFSGSS TIQEVKRNVY DLTSIPVRHQ LWEGWPTSAT BACU000281/1-655 LIITHREVQR EYNLNFSGSS TIQEVKRNVY DLTSIPVRHQ LWEGWPSSAT 251 300 bmy_00877T0/1-773 DDSMCLAESG LSYPCHRLTV GRRSSPAQTR EQSEEQSTDV HMVSDSDGDD ENSP00000379457/1-650 DDSMCLAESG LSYPCHRLTV GRRSSPAQTR EQSEEQITDV HMVSDSDGDD ENSTTRP00000008840/1-636 DDSMCLAESG LSYPCHRLTV GRRSSPAQTR EQSEEQSTDV HMVSDSDGDD ENSBTAP00000019259/1-650 DDSMCLAESG LSYPCHRLTV GRRSSPAQTR EQSEEQSTDV HMVSDSDGDD BACU000281/1-655 DDSMCLAESG LSYPCHRLTV GRRSSPAQTR EQSEEQSTDV HMVSDSDGDD 301 350 bmy_00877T0/1-773 FEDASEFGVD DGEVFGMASS ALRKSPMMPE NAENEGDALL QFTAEFSSRY ENSP00000379457/1-650 FEDATEFGVD DGEVFGMASS ALRKSPMMPE NAENEGDALL QFTAEFSSRY ENSTTRP00000008840/1-636 FEDASEFGVD DGEVFGMASS ALRKSPMMPE NAENEGDALL QFTAEFSSRY ENSBTAP00000019259/1-650 FEDASEFGVD DGEVFGMASS ALRKSPMMPE NAENEGDALL QFTAEFSSRY BACU000281/1-655 FEDASEFGVD DGEVFGMASS ALRKSPMMPE NAENEGDALL QFTAEFSSRY 351 400 bmy_00877T0/1-773 GDCHPVFFIG SLEAAFQEAF YVKARDVKRN LNNHHWSIFV RQNKFYTNRK ENSP00000379457/1-650 GDCHPVFFIG SLEAAFQEAF YVKARD---- ---------- ---------- ENSTTRP00000008840/1-636 GDCHPVFFIG SLEATFQEAF YVKARD---- ---------- ---------- ENSBTAP00000019259/1-650 GDCHPVFFIG SLEAAFQEAF YVKARD---- ---------- ---------- BACU000281/1-655 GDCHPVFFIG SLEAAFQEAF YVKARD---- ---------- ---------- 401 450 bmy_00877T0/1-773 PQLQLRKLLA VYLHHDESVL TNVFCSQMLC AESIVSYLSQ NFITWAWDLT ENSP00000379457/1-650 -----RKLLA IYLHHDESVL TNVFCSQMLC AESIVSYLSQ NFITWAWDLT ENSTTRP00000008840/1-636 -----RKLLA VYLHHDESVL TNVFCSQMLC AESIVSYLSQ NFITWAWDLT ENSBTAP00000019259/1-650 -----RKLLA IYLHHDESVL TNVFCSQMLC AESIVSYLSQ NFITWAWDLT BACU000281/1-655 -----RKLLA VYLHHDESVL TNVFCSQMLC AESIVSYLSQ NFITWAWDLT 451 500 bmy_00877T0/1-773 KDANRARFLT MCNRHFGSVV AQTIRTQKTD QFPLFLIIMG KRSSNEVLNV ENSP00000379457/1-650 KDSNRARFLT MCNRHFGSVV AQTIRTQKTD QFPLFLIIMG KRSSNEVLNV ENSTTRP00000008840/1-636 KDANRARFLT MCNRHFGSVV AQTIRTQKTD QFPLFLIIMG KRSSNEVLNV ENSBTAP00000019259/1-650 KDANRARFLT MCNRHFGSVV AQTIRTQKTD QFPLFLIIMG KRSSNEVLNV BACU000281/1-655 KDANRARFLT MCNRHFGSVV AQTIRTQKTD QFPLFLIIMG KRSSNEVLNV 501 550 bmy_00877T0/1-773 IQGNTTVDEL MMRLMAAMEI FTAQQQEDIK DEDEREAREN VKREQDEAYR ENSP00000379457/1-650 IQGNTTVDEL MMRLMAAMEI FTAQQQEDIK DEDEREAREN VKREQDEAYR ENSTTRP00000008840/1-636 IQGNTTVDEL MMRLMAAMEI FTAQQQEDIK DERDRNEK-- ---------- ENSBTAP00000019259/1-650 IQGNTTVDEL MMRLMAAMEI FTAQQQEDIK DEDEREAREN VKREQDEAYR BACU000281/1-655 IQGNTTVDEL MMRLMAAMEI FTAQQQEDIK DEDEREAREN VKREQDEAYR 551 600 bmy_00877T0/1-773 LSLEADRAKR EAHEREMAEQ FRLEQIRKEQ EEEREAIRLS LEQALPPEPK ENSP00000379457/1-650 LSLEADRAKR EAHEREMAEQ FRLEQIRKEQ EEEREAIRLS LEQALPPEPK ENSTTRP00000008840/1-636 ----ASRKLR EAHEREMAEQ FRLEQIRKEQ EEEREAIRLS LEQALPPEPK ENSBTAP00000019259/1-650 LSLEADRAKR EAHEREMAEQ FRLEQIRKEQ EEEREAIRLS LEQALPPEPK BACU000281/1-655 LSLEADRAKR EAHEREMAEQ FRLEQIRKEQ EEEREAIRLS LEQALPPEPK 601 650 bmy_00877T0/1-773 EENAEPVSKL RIRTPSGEFL ERRFLASNKL QIVFDFVASK GFPWDEFKLL ENSP00000379457/1-650 EENAEPVSKL RIRTPSGEFL ERRFLASNKL QIVFDFVASK GFPWDEYKLL ENSTTRP00000008840/1-636 EENAEPVSKL RIRTPSGEFL ERRFLASNKL QIVFDFVASK GFPWDEFKLL ENSBTAP00000019259/1-650 EEIAEPVSKL RIRTPSGEFL ERRFLASNKL QIVFDFVASK GFPWDEFKLL BACU000281/1-655 EENAEPVSKL RIRTPSGEFL ERRFLASNKL QIVFDFVASK GFPWDEFKLL 651 700 bmy_00877T0/1-773 STFPRRDVTQ LDPNKSLLEN LIVPTQGSAV CQDPGDVXQQ EAKQREAEMR ENSP00000379457/1-650 STFPRRDVTQ LDPNKSLLEV KLFPQ----- -----ETLFL EAKE------ ENSTTRP00000008840/1-636 STFPRRDVTQ LDPNKSLLEV KLFPQ----- -----ETLFL EAKE------ ENSBTAP00000019259/1-650 STFPRRDVTQ LDPNKSLLEV KLFPQ----- -----ETLFL EAKE------ BACU000281/1-655 STFPRRDVTQ LDPNKSLLEV KLFPQ----- -----ETLFL EAKE------ 701 750 bmy_00877T0/1-773 NSILAQVLDQ SARARLSNLA LVKPEKTKAV ENYLIQMARY GQLSGKVSEQ ENSP00000379457/1-650 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008840/1-636 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019259/1-650 ---------- ---------- ---------- ---------- ---------- BACU000281/1-655 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_00877T0/1-773 GLIEILEKVS QQTEKKTTVK FSRRKVMDSD EDDDY ENSP00000379457/1-650 ---------- ---------- ---------- ----- ENSTTRP00000008840/1-636 ---------- ---------- ---------- ----- ENSBTAP00000019259/1-650 ---------- ---------- ---------- ----- BACU000281/1-655 ---------- ---------- ---------- -----