KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:19 2014 Check: 00 .. Name: ENSP00000261884/1-581 Len: 593 Check: 2362 Weight: 1.00 Name: ENSBTAP00000019269/1-579 Len: 593 Check: 7244 Weight: 1.00 Name: ENSTTRP00000009200/1-573 Len: 593 Check: 5304 Weight: 1.00 Name: bmy_15369T0/1-560 Len: 593 Check: 7878 Weight: 1.00 Name: BACU001054/1-353 Len: 593 Check: 7005 Weight: 1.00 // 1 50 ENSP00000261884/1-581 MAVAGAVSGE PLVHWCTQQL RKTFGLDVSE EIIQYVLSIE SAEEIREYVT ENSBTAP00000019269/1-579 MAVAGAASRE QLVGWCTEQL RKSFGLDVSE EIIQYVLSIE SAEEIREYVT ENSTTRP00000009200/1-573 MAVTGALSQE QLVGWCTQQL RKTFGLDVSE EIIQYVLSIE SAEELREYVT bmy_15369T0/1-560 MAVTGAVSRE QLVGWCTQKL RKTFGLEVSE EIIQYVLSIE SAEELREYVT BACU001054/1-353 MAVTGAVSRE QLVGWCTQQL RKTFGLDVSE EIIQYVLSIE SAEELREYVT 51 100 ENSP00000261884/1-581 DLLQGNEGKK GQFIEELITK WQKNDQELIS DPLQQCFKKD EILDGQKSGD ENSBTAP00000019269/1-579 DLLQGNEGKK GQFIEELVTK WQKNDQELTS DALQQSFKKD D---GQRSGD ENSTTRP00000009200/1-573 DLLQGNEGRK GQFIEELVTK WQKNDQELIS DALQQSFKKD EILDGQRSGD bmy_15369T0/1-560 DLLQGNEGRK GQFIEELVTK WQKNDQELIS DALQQSFKKD EILDGQRSGD BACU001054/1-353 DLLQGNEGRK GQFIEELVTK WQKNDQELIS DALQQSFKKD A--------- 101 150 ENSP00000261884/1-581 HLKRGRKKGR NRQEVPAFTE PDTTAEVKTP FDLAKAQENS NSVKKKTKFV ENSBTAP00000019269/1-579 QLKRSRRKGR NKQEAPAFTE PDTTTEVKTP FDLAKAQDNS SSLKKKTKFV ENSTTRP00000009200/1-573 QLKRSRRKGR NRQEVPAFTE PDTTIEVKTP FDLAKAQENS SSLKKKTKFV bmy_15369T0/1-560 QLKRSRRKGR NRQEVPAFTE PDTTIEVKTP FDLAKAQENS SSLKKKTKFV BACU001054/1-353 ---------- ---------- ---------- ---EKAQENS -SLKKKTKFV 151 200 ENSP00000261884/1-581 NLYTREGQDR LAVLLPGRHP CDCLGQKHKL INNCLICGRI VCEQEGSGPC ENSBTAP00000019269/1-579 SLYTKEGQDK LAVLIPGRHP CDCLGQKHKL INNCLVCGRI VCEQEGSGPC ENSTTRP00000009200/1-573 SLYTKEGQDK LAVLIPGRHT CDCLGQKHKL INNCLICGRI VCEQEGSGPC bmy_15369T0/1-560 SLYTKEGQDK LAVLIPGRHT CDCLGQKHKL INNCLICGRI VCEQEGSGPC BACU001054/1-353 SLYTKEGQDK LAVLIPGRHT CDCLGQKHKL INNCLICGRI VCEQEGSGPC 201 250 ENSP00000261884/1-581 LFCGTL---- ----VCTHEE QDILQRDSNK SQKLLKKLMS GVENSGKVDI ENSBTAP00000019269/1-579 LFCGSL---- ----VCTHEE RDILQRDSNK SQKLLKKLMS GTENSGKVDI ENSTTRP00000009200/1-573 LFCGTL---- ----VCTREE QDILQRDSNK SQKLLKKLMS GTENSGKVDI bmy_15369T0/1-560 LFCGTLLIYI VVPPVCTREE QDILQRDSNK SQKLLKKLMS GTENSGKVDI BACU001054/1-353 LFCGTL---- ----VCTREE QDILQRDSNK SQKLLKKLMS GTENSGKVDI 251 300 ENSP00000261884/1-581 STKDLLPHQE LRIKSGLEKA IKHKDKLLEF DRTSIRRTQV IDDESDYFAS ENSBTAP00000019269/1-579 STKDLLPHQE LRFKSGLEKA IKHKDKLLEF DRTSIRRTQV IDDESDYFAS ENSTTRP00000009200/1-573 STKDLVRHQE LRFKSGLEKA IKHKDKLLEF DRTSIRRTHV IDDESDYFAS bmy_15369T0/1-560 STKDLLPHQE LRFKSGLEKA IKHKEKLLEF DRTSIRRTQV IDDESDYFAS BACU001054/1-353 STKDLLPHQE LRFKSGLEKA IKHKDKLLEF DRTSIRRTQV IDDESDYFAS 301 350 ENSP00000261884/1-581 DSNQWLSKLE RETLQKREEE LRELRHASRL SKKVTIDFAG RKILEEENSL ENSBTAP00000019269/1-579 DSNQWLSKIE REAIQKREEE LREFRHASRL SKKITIDFAG RKIVEDEDPL ENSTTRP00000009200/1-573 DSNQWLSKIE REALQKREEE LREFRHAS-L SKKIDV---G QEI--EDESL bmy_15369T0/1-560 DSNQWLSRIE REALQKREEE LREFRHASRL SKKITIDFAG RKIMEDENPL BACU001054/1-353 DSNQWLSRIE REALQKREEE LREFRHASRL SKKITIDFAG RKIMEDENPL 351 400 ENSP00000261884/1-581 AEYHSRLDET IQAIANGTLN QPLTKLDRSS EEPLGVLVNP NMYQSPPQWV ENSBTAP00000019269/1-579 AEYHSKLDEA IHAIANGTLN QPVTKLDRSS EEPLGLLVNP NLYQSPPQWI ENSTTRP00000009200/1-573 PEYHSRLDEA IHALANGTLN QPPTKLDRSS EEPLGLLVNP NLYQSPPQXX bmy_15369T0/1-560 AEYHSKLDEA IHAIANGTLN QPPTKLDRSS EEPLGLLVNP NLYQSPPQDR BACU001054/1-353 AEYHSKLDEA VHAIANGTLN QPPTKLDRSS EEPLGLLVNP NLYQSPPQVS 401 450 ENSP00000261884/1-581 DHTGAAS--- QKKAFRSSGF GLEFNSFQHQ LRIQDQEFQE GFDGGWCLSV ENSBTAP00000019269/1-579 DQMGAAS--- QKKAFHPAGS GLEFSSSRHQ FRIQDQEFQE GFDGGWCLSM ENSTTRP00000009200/1-573 XXXXXXX--- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15369T0/1-560 GTGGGSTYVP KSVSWAYETD DLEGDVSNTW HSNDDDVYRA PPIDHSILPT BACU001054/1-353 G--------- ---------- ---------- ---------- ---------- 451 500 ENSP00000261884/1-581 HQPWASLLVR GIKRVEGRSW YTPHRGRLWI AATAKKPSPQ EVSELQATYR ENSBTAP00000019269/1-579 HQPWASLLVR GIKRVEGRNW YTPHRGRLWI AATAKRPSPQ EVSELQTTYL ENSTTRP00000009200/1-573 XXXXXXXXXX XXXXVEGRSW YTPHRGRLWI AATAKRPSPQ EVSELQTTYL bmy_15369T0/1-560 ASRAAWEPNI DQSRLPKSPP YTAFLGNL-- --------PY DVTE-DSIKK BACU001054/1-353 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000261884/1-581 LLRGKDVEFP NDYPSGCLLG CVDLIDCLSQ KQFKEQFPDI SQ-ESDSPFV ENSBTAP00000019269/1-579 LLRGKGVEFP SDYPSGCLLG CVDLIDCLSQ KQFKDQYPDI SQEESDSPFV ENSTTRP00000009200/1-573 LLRGKDVEFP NDYPS-CLLG CVDLTDCLSQ KQF-KSYPDM SQ-ESDSPFV bmy_15369T0/1-560 FFRGLNI--- ---------S AVCLPHEPSN PERLKGFGYA EFEDLDSLLS BACU001054/1-353 ---------- ---------- ---------- ---------- -------PLL 551 600 ENSP00000261884/1-581 FICKNPQEMV VKFPIKGNPK IWKLDSKIHQ GAKKGLMKQN KAV ENSBTAP00000019269/1-579 FICTNPQEMI VKFPIKGNPK IWKLDSKIHQ GAKKGLMKQN KAG ENSTTRP00000009200/1-573 FICTNPQEMI VKFPIKGSPK IWKLDSKIHQ GAKKGLMKQN KAV bmy_15369T0/1-560 ALSLNEESLG NR-------- --RIRVDVAD QAQDKDRDDR SFG BACU001054/1-353 ---------- ---------- ---------- ---------- ---