KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:21 2014 Check: 00 .. Name: ENSP00000339637/1-821 Len: 862 Check: 8786 Weight: 1.00 Name: ENSBTAP00000019280/1-814 Len: 862 Check: 772 Weight: 1.00 Name: ENSTTRP00000009116/1-817 Len: 862 Check: 6986 Weight: 1.00 Name: bmy_17123T0/1-446 Len: 862 Check: 5766 Weight: 1.00 Name: BACU005504/1-762 Len: 862 Check: 6446 Weight: 1.00 // 1 50 ENSP00000339637/1-821 MDPECAQLLP ALCAVLVDPR QPVADDTCLE KLLDWFKTVT EGESSVVLLQ ENSBTAP00000019280/1-814 MDPECARLLP ALCDVLADPR QPVADDTCLE KLLDWFKAVT EAGSSLLLLQ ENSTTRP00000009116/1-817 MDPECSRLLP ALCAVLADPG QPVADDTCLE KLLDWFTAVT EAGSSLLLLQ bmy_17123T0/1-446 MDPECSRLLP ALCAVLADPR QPVADDTCLE KLLDWFTTVT EAGSSLLLLQ BACU005504/1-762 MDPECSRLLP ALCAVLADPR QPVADDTCLE KLLDWFTTVT EAGSSLLLLQ 51 100 ENSP00000339637/1-821 EHPCLVELLS HVLKVQDLSS GVLSFSLRLA GTFAAQENCF QYLQQGELLP ENSBTAP00000019280/1-814 DHPCLVELLF HVLKPQDLSS RILSFALRLA GIFAAQENCF QYLQQGELLP ENSTTRP00000009116/1-817 ENPCLVELLF HVLKSQDLSS RILSFSLRLA GIFAAQENCC QYLQQGELLP bmy_17123T0/1-446 ENPCLVELLF RVLKSQDLSS RILSFSLRLA GIFAAQENCF QYL------- BACU005504/1-762 ENPCLVELLF RVLKSQDLSS RILSFSLRLA GIFAAQEDCF QYLQQGELLP 101 150 ENSP00000339637/1-821 GLFGEPGPLG RATWAVPTVR SGWIQGLRSL AQHPSALRFL ADHGAVDTIF ENSBTAP00000019280/1-814 GLFGEPGPLG AAAWAAPSVR SGWIQGLHSL AQHPSALRFL ADSGAVDTIF ENSTTRP00000009116/1-817 MLFGEVGPLG GAAWTAPAVR SGWIQGLRTL AQHPSALRFL AACGAVD-IF bmy_17123T0/1-446 ---------- ---------- ---------- ---------- ---------- BACU005504/1-762 MLFGEAGPLG GAAWTAPAVR SGWIQGLRTL AQHPSALRLL AACGAVDTIF 151 200 ENSP00000339637/1-821 SLQGDSSLFV ASAASQLLVH VLALSMRGGA EGQPCLPGGD WPACAQKIMD ENSBTAP00000019280/1-814 SLQGDPSLFV ASAAGQLLVR VLDLALCGPA EGHISLQAWD WPACARKIVC ENSTTRP00000009116/1-817 SLQGDPSLFV ASAAGQLLVH ILDLAMRGPA EGHRSPQACD WPACAQKIVG bmy_17123T0/1-446 ---------- ---------- ---------- ---------- ---------- BACU005504/1-762 SLQGDSSLFV ASAAGQLLVH ILDLAMRGPA EGRCSPQACD WPACAQKIVC 201 250 ENSP00000339637/1-821 HVEESLCSAA TPKVTQALNV LTTTFGRCQS PWTEALWVRL SPRVACLLER ENSBTAP00000019280/1-814 HLEDCLRSEA TPRVTQALHV LTTAFGHCHG LWTQGLWVQL SPLVARLLEK ENSTTRP00000009116/1-817 HIEDSLCSTA VPQVTQALSV LTTAFGHCHG LWTQGLWVRL SPLVARLLEK bmy_17123T0/1-446 ---------- ---------- ---------- ---------- ---------- BACU005504/1-762 HIEDSLCSIA TPQVTQALNV LTTVFGHCHG LWTQGLWVRL SPLVARLLEK 251 300 ENSP00000339637/1-821 DPIPAAHSFV DLLLCVARSP VFSSSDGSLW ETVARALSCL GPTHMGPLAL ENSBTAP00000019280/1-814 DPVPAPHALV DLLLSVARSS MLSSDPG-LW ETAAQTLSRL SPTQAGPLAA ENSTTRP00000009116/1-817 DPVPASHSLV DLLLSVARSA -PSSYRG-LW ETLAQTLSHL SPTQAGPLAL bmy_17123T0/1-446 ---------- ---------- ---------- ---------- ---------- BACU005504/1-762 DPVPASHSLV DLLLSVARSS VPSSDRG-LW ETLAQTLSHL SPTQAGPLAL 301 350 ENSP00000339637/1-821 GILKLEHCPQ ALRTQAFQVL LQPLACVLKA TVQAPGPPGL LDGTADDATT ENSBTAP00000019280/1-814 GILKLQDCPQ ALRIQAFGVL LQPLAFVLEA TAQAPGMPGL LEGAAGDLMA ENSTTRP00000009116/1-817 GILKLQDCPQ ALRTQAFGIL LQPLACVLEA AAQAPGPPGL LEGAAGNSMT bmy_17123T0/1-446 ---------Q ALRTQAFGIL LQPLACVLEA AAQAPGPPEL L--------- BACU005504/1-762 GILKLQDCPQ ALRTQAFGVL LQPLACVLEA AAQAPGPPGL LGGAAGDPMT 351 400 ENSP00000339637/1-821 VDTLLASKSS CAGLLCRTLA HLEELQPLPQ RPSPWPQASL LGATVTVLRL ENSBTAP00000019280/1-814 VDTLPPSKSA CVGLLCSALA HLELLQPLPQ RPSPWPQAPL LAAVVAILRL ENSTTRP00000009116/1-817 VDTLLSSKSA CVGLLCCALA HLGLLQPLPQ RPSPWPQAPL LGAAVTILRL bmy_17123T0/1-446 ---------- ---------- ------P--- ---------- ---------- BACU005504/1-762 VDTLLCSKSA CVGLLCCALA HLGLLQPL-- ---------- ---------- 401 450 ENSP00000339637/1-821 CDGSAAPASS VGGHLCGTLA GCVRVQRAAL DFLGTLSQGT GPQELVTQAL ENSBTAP00000019280/1-814 CNGSAAPNSE AGGRLCAMLG GCVRVQRAAL DFLGVLSQGL GPQELVTQVF ENSTTRP00000009116/1-817 CSGSAAPTSD VGSRLCAILV GCGRVQRAAL DFLGALSQGT GPQELVTQVF bmy_17123T0/1-446 ---------- ---------- ---------- ---------- ---------- BACU005504/1-762 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000339637/1-821 AVLLECLESP GSSPTVLKKA FQATLRWLLS SPKTPGCSDL GPLIPQFLRE ENSBTAP00000019280/1-814 AILLEYLVSP DSSPTVLKKA FQATLRWLLS SAAPPGCCDL EPYAQLVLGE ENSTTRP00000009116/1-817 SVLLEYLVSP ESSPMVLKKA FQATLRWLLS SPKTPGCCDL DPHTQLFLRE bmy_17123T0/1-446 ---------- ---------- ---------- ---------- ---------- BACU005504/1-762 ---------- -----VLKKA FQATLRWLLS SPKTPGCCDL DPRTQLFLRG 501 550 ENSP00000339637/1-821 LFPVLQKRLC HPCWE----- --VRDSALEF LTQLSRHW-- ----GGQADF ENSBTAP00000019280/1-814 LLSVLRKRLC SPCWE----- --VRDSGLEF LTQMTRHQ-- ----GGQAGF ENSTTRP00000009116/1-817 LLPVLQKRLC SPCWE----- --VRDSGLEF LTQ-TRHW-- ----GXXXXX bmy_17123T0/1-446 ---VLQKRLC SPCWE----- --VRDSGLEF LTQMTRHW-- ----GGQAGF BACU005504/1-762 S--------- ---WELGPPR LPLGEGGEAV DSAFGHSWLW LLGPPGQAGF 551 600 ENSP00000339637/1-821 RCALLASEVP QLALQLLQDP ESYVRASAVT AMGQLSSQG- LHAPTSPEHA ENSBTAP00000019280/1-814 RQALLASEVP ELTRQLLQDP ESYVRASAVA AVGQLSSWGL LAAPSSPEHA ENSTTRP00000009116/1-817 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX--XXX XXXXXXXXXX bmy_17123T0/1-446 RQALLASEVP ELTKQLLRDP ESYVRASAVT ATGQLSSWGL LAAPASPERP BACU005504/1-762 RQALLASEVP ELTKQLLQDP ESYVRASAVT ATGQLSSWGL LAAPASPERP 601 650 ENSP00000339637/1-821 EARQ-SLFLE LLHILSVDSE GFPRRAVMQV FTEWLRDGHA DAAQDTEQFV ENSBTAP00000019280/1-814 ATPQKTPLEE LLLVLTTDSE GFPRRAVMRV FTEWLRDGYA DVAEDPERFV ENSTTRP00000009116/1-817 XXXXXSLLVE LLHILSTDSE GFPRRAVMQV FTEWLRDGHA DVAEDAEQFV bmy_17123T0/1-446 GAQQESLLLA LLHILSADSE GFPRRAVMQV FTEWLRDGHA DVAEDPERFV BACU005504/1-762 GAQQKSLLVE LLHVLCADSE GFPRRAVMQV FTEWLRDGHA DVAEDPERFV 651 700 ENSP00000339637/1-821 ATVLQAASRD LDWEVRAQGL ELALVFLGQT LGPPRTHCPY AV-------- ENSBTAP00000019280/1-814 ARVLQAASGD LDWEVRVQGL ELALAFLEQL LGPCG---PS AA-------- ENSTTRP00000009116/1-817 AGALQAASRD LDWEVRAQGL ELALVFLEQL LGQRGSHCPY AV-------- bmy_17123T0/1-446 ARVLQAASRD PDWEVRAQGL ELALVFLGRL LGPRGSHCPC AV-------- BACU005504/1-762 ARVLQAASRD PDWEVRAQGL ELALVFLGQL LGPRGSHCPC AVALPETAPP 701 750 ENSP00000339637/1-821 ---------- --------AL PEVAPAQPLT EALRALCHVG LFDFAFCALF ENSBTAP00000019280/1-814 ---------- ---------- ---APPGALA QALQALCRVQ LFEFAFRSLF ENSTTRP00000009116/1-817 ---------- --------AL PETAPPGVLA QALQVLCRVQ LFEFAFRALF bmy_17123T0/1-446 ---------- --------AL PEAAPPGTLA QALQVLCRVQ LFEFAFRALF BACU005504/1-762 GALAQALPEA APPGTLAQAL PEAAPPGTLA QALQVLCRVQ LFEFAFRALF 751 800 ENSP00000339637/1-821 DCDRPVAQKS CDLLLFLRDK IASYSSLREA RGSPNTASAE ATLPRWRAGE ENSBTAP00000019280/1-814 DCDRPVAQKS CDLLLFLRAK ATPSSNSQEA GDGPDVTSVE AALRRWQAGE ENSTTRP00000009116/1-817 DCDRPVAQKS CDLLLFLRAK AAPCGSPQEA GDSPNVASVE ATLQRWQAGE bmy_17123T0/1-446 DCDRPVAQKS CDLLLFLRAK AAPCGSPQEA GDSPNVASVE ATLQRWQAGE BACU005504/1-762 DCDRPVAQKS CDLLLFLRAK AALCGSPQEA GDSPNVASVE ATLQRWQAGE 801 850 ENSP00000339637/1-821 QAQPPGDQEP EAVLAMLRSL DLEGLRSTLA ESSDHVEKSP QSLLQDMLAT ENSBTAP00000019280/1-814 QGQPLGELAP EAVLAVLRSM DLEALQDTLA ESSDHVERSP QSLLQDMLAT ENSTTRP00000009116/1-817 QGQPLGYLEP GAVVALLRSV DLEGLRDTLA ESSDHVEKSP QSLLQDMLAA bmy_17123T0/1-446 QGQPLGYLEP GAVMAVLRSI DLEGLRDTLA ESSDHVEKSP QSLLQDMLAA BACU005504/1-762 QGQPLGYLEP GAVMAVLRSI DLEGLRDTLA ESSDHVEKSP QSLLQDMLAA 851 900 ENSP00000339637/1-821 GGFLQGDEAD CY ENSBTAP00000019280/1-814 VGVLGDNEAD CY ENSTTRP00000009116/1-817 VGVLGENEAD CY bmy_17123T0/1-446 VGVLGENEAD CY BACU005504/1-762 VGVLGENEAD CY