KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:21 2014 Check: 00 .. Name: bmy_10655T0/1-627 Len: 652 Check: 876 Weight: 1.00 Name: ENSP00000361602/1-646 Len: 652 Check: 165 Weight: 1.00 Name: ENSBTAP00000019284/1-536 Len: 652 Check: 8044 Weight: 1.00 Name: BACU001310/1-595 Len: 652 Check: 8235 Weight: 1.00 Name: ENSTTRP00000013121/1-646 Len: 652 Check: 8565 Weight: 1.00 // 1 50 bmy_10655T0/1-627 --MCPPLTRF QFLRVFGG-- --------DP ---RTRSGRS --RSPDNSHS ENSP00000361602/1-646 MSTAPSLSAL RSSKHSGGGG GGGGGGGADP AWTSALSGNS --SGPGPGSS ENSBTAP00000019284/1-536 MSTAPSLSAL RSSKHSGG-- ---GGGSADP AWTSALSGNS --SGPGPGSS BACU001310/1-595 MSTAPSLSAL RSSKHSGG-- -GSGSGSADP AWTSALSGNS SGSGPGPGSS ENSTTRP00000013121/1-646 MSTAPSLSAL RSSKHSGG-- -GSGSGSADP AWTSALSGNS SGSGPGPGSS 51 100 bmy_10655T0/1-627 GTSIHTHFCT QI-------Q ANRLPIKVLK MLTARTGHIL HPEYLQPLPS ENSP00000361602/1-646 PAGSTKPFVH AVPPSDPLRQ ANRLPIKVLK MLTARTGHIL HPEYLQPLPS ENSBTAP00000019284/1-536 PAGSTKPFVH AVPPSDPLRQ ANRLPIKVLK MLTARTGHIL HPEYLQPLPS BACU001310/1-595 PAGSTKPFVH AVPPSDPLRQ ANRLPIKVLK MLTARTGHIL HPEYLQPLPS ENSTTRP00000013121/1-646 PAGSTKPFVH AVPPSDPLRQ ANRLPIKVLK MLTARTGHIL HPEYLQPLPS 101 150 bmy_10655T0/1-627 TPVSPIELDA KKSPLALLAQ TCSQIGKPDP SPSSKLSSVA SNGGGAGGAG ENSP00000361602/1-646 TPVSPIELDA KKSPLALLAQ TCSQIGKPDP SPSSKLSSVA SNGGGAGGAG ENSBTAP00000019284/1-536 TPVSPIELDA KKSPLALLAQ TCSQIGKPDP SPSSKLSSVA SNGGGTGGAG BACU001310/1-595 TPVSPIELDA KKSPLALLAQ TCSQIGKPDP SPSSKLSSVA SNGGGAGGAG ENSTTRP00000013121/1-646 TPVSPIELDA KKSPLALLAQ TCSQIGKPDP SPSSKLSSVA SNGGGAGGAG 151 200 bmy_10655T0/1-627 GGAGGDKDAK SGPLKLSDIG VEDKSSFKPY SKPGSDKKEP -GGGGGGGGG ENSP00000361602/1-646 GGAAGDKDTK SGPLKLSDIG VEDKSSFKPY SKPGSDKKEP -GGGGGGGGG ENSBTAP00000019284/1-536 GGAGGDKDAK SGPLKLSDIG VEDKSSFKPY SKPGSDKKEP GGGGGGGGGG BACU001310/1-595 GGAGGDKDAK SGPLKLSDIG VEDKSS---- ---------- ---------- ENSTTRP00000013121/1-646 GGAGGDKDAK SGPLKMSDIG VEDKSSFKPY SKPGSDKKEP -GGGGGGGGG 201 250 bmy_10655T0/1-627 GGGGGGGVSA EKSGFRVPSA TCQPFTPRTG SPSSSASACS PGGMLPSAGG ENSP00000361602/1-646 GGGGGGGVSS EKSGFRVPSA TCQPFTPRTG SPSSSASACS PGGMLSSAGG ENSBTAP00000019284/1-536 GGGGGGGVSA EKSGFRVPSA TCQPFTPRTG SPSSSASACS PGGMLPSAGG BACU001310/1-595 ---------- ---------- ---------- SPSSSASACS PGGMLPSAGG ENSTTRP00000013121/1-646 GGGGGGGVSA EKSGFRVPSA TCQPFTPRTG SPSSSASACS PGGMLPSAGG 251 300 bmy_10655T0/1-627 GPEGKDDKKD PEAGGGGGGS KGSGGASAEG GPTGLAHGRI SCGGGINVDV ENSP00000361602/1-646 APEGKDDKKD TDVGGGG--- KGTGGASAEG GPTGLAHGRI SCGGGINVDV ENSBTAP00000019284/1-536 GPDGKDDKKD PEAGGGGGGT KGSGGSSAEG GPTGLAHGRI SCGGGINVDV BACU001310/1-595 GPEGKDDKKD PEAGGGGGGS KGSGGASAEG GPTGLAHGRI SCGGGINVDV ENSTTRP00000013121/1-646 GPEGKDDKKD PEAGGGGGGS KGSGGASAEG GPTGLAHGRI SCGGGINVDV 301 350 bmy_10655T0/1-627 NQHPDGGPGG KALGSDCGGS SGSGSGSGPS APTSSSVLGS GLVAPVSPYK ENSP00000361602/1-646 NQHPDGGPGG KALGSDCGGS SGSSSGSGPS APTSSSVLGS GLVAPVSPYK ENSBTAP00000019284/1-536 NQHPDGGPGG KALGSDCGGS SGSGSGSGPS APTSSSVLGS GLVAPVSPYK BACU001310/1-595 NQHPDGGPGG KALGSDCGGS SGSGSGSGPG APTSSSVLGS GLVAPVSPYK ENSTTRP00000013121/1-646 NQHPDGGPGG KALGSDCGGS SG--SGSGPS APTSSSVLGS GLVAPVSPYK 351 400 bmy_10655T0/1-627 PGQTVFPLPP AGMTYPGSLA GAYAGYPPQF LPHGVALDPT KPGSLVGAQL ENSP00000361602/1-646 PGQTVFPLPP AGMTYPGSLA GAYAGYPPQF LPHGVALDPT KPGSLVGAQL ENSBTAP00000019284/1-536 PGQTVFPLPP AGMTYPGSLA GAYAGYPPQF LPHGVALDPT KPGSLVGAQL BACU001310/1-595 PGQTVFPLPP AGMTYPGSLA GAYAGYPPQF LPHGVALDPT KPGSLVGAQL ENSTTRP00000013121/1-646 PGQTVFPLPP AGMTYPGSLA GAYAGYPPQF LPHGVALDPT KPGSLVGAQL 401 450 bmy_10655T0/1-627 AAAAAGSLGC SKPAGSSPLA GASPPSVMTA SLCRDPYCLS YHCASHLAGA ENSP00000361602/1-646 AAAAAGSLGC SKPAGSSPLA GASPPSVMTA SLCRDPYCLS YHCASHLAGA ENSBTAP00000019284/1-536 AAAAAGSLGC SKPAGSSPLA GASPPSVMTA SLCRDPYCLS YHCASHLAGA BACU001310/1-595 AAAAAGSLGC SKPAGSSPLA GASPPSVMTA SLCRDPYCLS YHCASHLAGA ENSTTRP00000013121/1-646 AAAAAGSLGC SKPAGSSPLA GASPPSVMTA SLCRDPYCLS YHCASHLAGA 451 500 bmy_10655T0/1-627 AAASASCAHD PAAAAAALKS GYPLVYPTHP LHGVHSSLTA AAAAGATPPS ENSP00000361602/1-646 AAASASCAHD PAAAAAALKS GYPLVYPTHP LHGVHSSLTA AAAAGATPPS ENSBTAP00000019284/1-536 AAASASCA-- ---------- ---------- ---------- ---------- BACU001310/1-595 AAASASCAHD PAAAAAALKS GYPLVYPTHP LHGVHSSLTA AAAAGATPPS ENSTTRP00000013121/1-646 AAASASCAHD PAAAAAALKS GYPLVYPTHP LHGVHSSLTA AAAAGATPPS 501 550 bmy_10655T0/1-627 LAGHPLYPYG FMLPNDPLPH ICNWVSANGP CDKRFATSEE LLSHLRTHTA ENSP00000361602/1-646 LAGHPLYPYG FMLPNDPLPH ICNWVSANGP CDKRFATSEE LLSHLRTHTA ENSBTAP00000019284/1-536 ---------- ---------- ---------- ---------- ---------- BACU001310/1-595 LAGHPLYPYG FMLPNDPLPH ICNWVSANGP CDKRFATSEE LLSHLRTHTA ENSTTRP00000013121/1-646 LAGHPLYPYG FMLPNDPLPH ICNWVSANGP CDKRFATSEE LLSHLRTHTA 551 600 bmy_10655T0/1-627 FPGTDKLLSG YPSSSSLASA AAAAMACHMH IPTSGAPGSP GTLALRSPHH ENSP00000361602/1-646 FPGTDKLLSG YPSSSSLASA AAAAMACHMH IPTSGAPGSP GTLALRSPHH ENSBTAP00000019284/1-536 ---------- -------PSA AAAAMACHMH IPKSGAPGSP GTLALRSPHH BACU001310/1-595 FPGTDKLLSG YPSSSSLASA AAAAMACHMH IPTSGAPGSP GTLALRSPHH ENSTTRP00000013121/1-646 FPGTDKLLSG YPSSSSLASA AAAAMACHMH IPTSGAPGSP GTLALRSPHH 601 650 bmy_10655T0/1-627 ALGLSSRYHP YSKSPLPTPG APVPVPAATG PYYSPYALYG QRLTTASALG ENSP00000361602/1-646 ALGLSSRYHP YSKSPLPTPG APVPVPAATG PYYSPYALYG QRLTTASALG ENSBTAP00000019284/1-536 ALGLSSRYHP YSKSPLPTPG APVPVPAATG PYYSPYALYG QRLTTASALG BACU001310/1-595 ALGLTSRYHP YSKSPLPTPG APVPVPAATG PYYSPYALYG QRLTTASALG ENSTTRP00000013121/1-646 ALGLSSRYHP YSKSPLPTPG APVPVPAATG PYYSPYALYG QRLTTASALG 651 700 bmy_10655T0/1-627 YQ ENSP00000361602/1-646 YQ ENSBTAP00000019284/1-536 YQ BACU001310/1-595 YQ ENSTTRP00000013121/1-646 YQ