KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:22 2014 Check: 00 .. Name: ENSP00000337510/1-709 Len: 752 Check: 2150 Weight: 1.00 Name: ENSBTAP00000019285/1-712 Len: 752 Check: 5752 Weight: 1.00 Name: ENSTTRP00000010918/1-676 Len: 752 Check: 6949 Weight: 1.00 Name: bmy_10098T0/1-731 Len: 752 Check: 8020 Weight: 1.00 Name: BACU009287/1-584 Len: 752 Check: 83 Weight: 1.00 // 1 50 ENSP00000337510/1-709 MGKARRSPPG HHRHCEGCFN RHCHIPVEPN TSCLVISCHL LCGATFHMCK ENSBTAP00000019285/1-712 -GRTRRPPPG QHRHCERCFN RHCHMPVEPS VSCPVINCHL SCGATFHMCK ENSTTRP00000010918/1-676 ---------- ---------- -------EPG VSCLVINCHL SCGATFHMCK bmy_10098T0/1-731 MRRARRPPPG QHRHCDRCFN RHCHMPVEPG VSCLVINCHL SCGATFHMCK BACU009287/1-584 ---------- ---------- ---------- ---------- -------MCK 51 100 ENSP00000337510/1-709 EAEHQLLCPL EQVPCLNSEY GCPLSMSRHK LAKHLQVCPA SVVCCSMEWN ENSBTAP00000019285/1-712 EAEHELLCPL EQVPCLNSEY GCPLFMSRHK LAKHLQVCPA SVVCCSMEWN ENSTTRP00000010918/1-676 EAEHELLCPL EQVPCLNSEY GCPLSISRHK LAKHLQVCPA SVVCCSMEWN bmy_10098T0/1-731 EAEHELLCPL EQVPCLNSES GCPLSISRHK LAKHLQACPA SVVCCSMEWN BACU009287/1-584 EAEHELLCPL EQVPCLNSKS GCPLSISRHK LAKHLQVCPA SVVCCSMEWN 101 150 ENSP00000337510/1-709 RWPNVDSETT LHENIMKETP SEECLDTALA LQDQKVLFRS LKMVELFPET ENSBTAP00000019285/1-712 RWPNVDSETT LHENIMKETP DEECLDTALA LQDQKVLFRS LKMVELFPET ENSTTRP00000010918/1-676 RWPNLDSETA LHENIMKETP NEECLDTALA LQDQKVLFRS LKMVELFPET bmy_10098T0/1-731 RWPNVDSETA LHENIMKEXP NEECLDTALA LQDQKVLFRS LKMVELFPEA BACU009287/1-584 RWPNVDSETA LHENIMKETP NEECLDTALA LQDQKVLFRS LKMVELFPEA 151 200 ENSP00000337510/1-709 REATEEEPTM NGETSVEEMG GAVGGVDIGL VPHG-LSATN GEMAELSQEE ENSBTAP00000019285/1-712 REPTEEEPPM NGEASWEEMD GAVGGEDAGL VTGCSLSAMN GEVVELSQEE ENSTTRP00000010918/1-676 REPMEEEPTM NGEASWKEME GAVGGADAGL VT-----TTN GEVAELSQ-E bmy_10098T0/1-731 REPMEEEPTM NGEASWKEME GAVGGADAGL VTSGSLSTTN GEVAELSQEE BACU009287/1-584 REPMEEEPTM NGEASWKEME GAVGGADAGL VTSGSLSTTN GEVAELSQEE 201 250 ENSP00000337510/1-709 REVLAKTKEG MDLVKFGQWE NIFSKEHAAS ALTNSSASCE SKNKNDSEKE ENSBTAP00000019285/1-712 REALAKTKEG MDLAKFDKWE NMFSKEHAAS ALTSSSASSD SKSRNGPEKE ENSTTRP00000010918/1-676 REVLAKTREG MDLAKFDKWE NMFSKEHAAS ALTSSSVSSE SKSRDGPEKE bmy_10098T0/1-731 REVLAKTKEG MDLAKFDKWE NMFSKEHAAS ALTSSSVSSE GTSRDGPEKE BACU009287/1-584 REVLAKTKEG MDLAKFDKWE NMFSKEHAAS ALTSSSMSSE GTSRDGPEKE 251 300 ENSP00000337510/1-709 QISSGHNMVE GEGA------ ---PKKKEPQ ENQKQQDVRT AMETTGLAPW ENSBTAP00000019285/1-712 QISNSNRMVE -EGA------ ---AKGKEPQ EDQKQQDFHA AIEKTGLAPW ENSTTRP00000010918/1-676 QISSSNNMVE -KSA------ ---AKGKETQ EDQKQQEFHE AIEKSGLAPW bmy_10098T0/1-731 QMSSSNNTVE -ESA------ ---AKGKETQ EDQKQRDFHA AIEKSGLAPW BACU009287/1-584 QISSSNNTVE -ESAAKGKXX XXXAKGKETQ EDQKQRDFHA AIEKSGLAPW 301 350 ENSP00000337510/1-709 QDGVLERLKT AVDAKDYNMY LVHNGRMLIH FGQMPACTPK ERDFVYGKLE ENSBTAP00000019285/1-712 QDGVLERLKT AVDAKDYNMY LVHNGRMLIH FGQMPACTPK ERDFVYGNLE ENSTTRP00000010918/1-676 QDGVLERLKT AMDAKDYNMY LVHNGRMLIH FGQMPACTPK ERDFVYGKLE bmy_10098T0/1-731 QDGVLERLKT AVDAKDYNMY LVHNGRMLIH FGQLPPCTPK ERDFVYGKLE BACU009287/1-584 QDGVLERLKT AMDAKDYNMY LVHNGRMLIH FGQLPACTPK ERDFVYGNLE 351 400 ENSP00000337510/1-709 AQEVKTVYTF KVPVSYCGKR ARLGDAMLSC KPSEHKAVDT SDLGITVEDL ENSBTAP00000019285/1-712 AQEVKTVYTF KVPVSYCGKR ARLGDAM-SC RPSEHKAVDT SDLGITVEDL ENSTTRP00000010918/1-676 AQEVKTVYTF KVPMSYCGKR AHLRDTSLSS RPSEHKAVDT LDLGITVEDL bmy_10098T0/1-731 AQEVKTVYTF KVPVSYCGKR AHLRDTLSSC RPSEHKAVDT LDLGITVEDL BACU009287/1-584 AQEVKTVYTF KVPVSYCWKR AHLRDTLSSC RPSEHKAVDT LDLGITVEDL 401 450 ENSP00000337510/1-709 PKSDLIKTTL QCALERELKG HVISESRSID GLFMDFATQT YNFEPEQFSS ENSBTAP00000019285/1-712 PKSDLIKTTL LCALERELKG HVISESRSID GLFMDFATQT YSFEPEQFSS ENSTTRP00000010918/1-676 PKSDLIKTTL LCALERELKG HVISESRSID GVFMDFATQT YSFEPEQFSS bmy_10098T0/1-731 PKSDLIKTTL LCALERELKG HVISESRSID GLFMDFATQT YSFEPEQFSS BACU009287/1-584 PKSDLIKTTL LCALERELKG HVISESRSID GLFMDFATQT YSFEPEQFSS 451 500 ENSP00000337510/1-709 GTVLAD-LTA ATP----GGL HVELHSECVT RRHNKSSSAF TFTCNKFFRR ENSBTAP00000019285/1-712 GTVLADLLTT ANPNSNANGL HVELHSECVT RRHNKSSSAF TFTCNKFFRR ENSTTRP00000010918/1-676 RTVLADLLTT ANL----NGL HMELHSECVT RRHNKSSSAF TFTCNKFFRR bmy_10098T0/1-731 RMVLADLLTT ANL----NEL HMELHSECVT RRHNKSSSAF TFTCNKFFRR BACU009287/1-584 RTVLADLLTT ANP----NGL HMELHR---- ---------- ---------- 501 550 ENSP00000337510/1-709 DEFPLHFKNV HTDIQSCLNG WFQHRCPLAY LGCTFVQNHF RPPGQKAKVI ENSBTAP00000019285/1-712 DEFPLHFKNV HTDIQSCLNG WFQHRCPLAY LGCTFIQNHF RPPGQKAKVI ENSTTRP00000010918/1-676 DEFPLHFKNV HTDIQSCLNG WFQHRCPLAY LGCTFIQNHF CPPGKKAKVI bmy_10098T0/1-731 DEFPLHFKNV HTDIQSCLNG WFQHRCPLAY LGCTFIQNHF CPPGQKAKVI BACU009287/1-584 ---------- ---------- ---------- ---------- ----QKAKVI 551 600 ENSP00000337510/1-709 YSQELKTFAI KPEVAPELSE GRKNNHLLGH GGKSQNSLTS LPLEILKYIA ENSBTAP00000019285/1-712 YSQELKTFAI KPEVASELSE GRKNNHFSGR EGKNQNSLTS LPLEVLQYIA ENSTTRP00000010918/1-676 YSQELKTFAI KPEVASELSE G-GNNHLSGH EGKNQNSLTS LPLEVLQYIA bmy_10098T0/1-731 YSQELKTFAI KPEVASELSE G-GNSHLSGR EGKSQNSLTS LPLEVLQYVA BACU009287/1-584 YSQELKTFAI KPEVASELSE G-GNSHLSGR EGKSQNSLTS LPLEVLQYIA 601 650 ENSP00000337510/1-709 GFLDSVSLAQ LSQVSVLMRN ICATLLQERG MVLLQWKKKR YSHGGTSWRV ENSBTAP00000019285/1-712 GFLDSISLSQ LSQVSVLMRS ICATLLQERG MVLLQWKKKR YSHGGTSWRV ENSTTRP00000010918/1-676 GFLDSISLSQ LSQVSVLMRN ICATLLQERG MVLLQWKKKR YSHGGTSWRV bmy_10098T0/1-731 GFLDSVSLSQ LSQVSVLMRN ICATLLQERG MVLLQWKKK- -SNNDKKLR- BACU009287/1-584 GFLDSVSLSQ LSQVSVLMRN ICATLLQERG MVLLQWKKKR YSHGGTSWRV 651 700 ENSP00000337510/1-709 HREIWQFSSL FSKIKSWEFN EVTSMSEHLK SCPFNIVEHK TDPILLTSMC ENSBTAP00000019285/1-712 HRKIWQFSSL FSKIKSWEFN EVASMSEHLK SCPFNVVEHK TDPILLTSMH ENSTTRP00000010918/1-676 HRKIWQFSSL FSKIKGWEFN EVASMSEHLK SCPFNVVEHK TDPILLTSMC bmy_10098T0/1-731 ---IWQFSSL FSKIKSWEFN EVASMSEHLK SCPFNVVEHK TDPILLTSMC BACU009287/1-584 HRKASKY-SL FSKIKSWEFN EVASMSEHLK SCPFNVVEHK TDPILLTSMC 701 750 ENSP00000337510/1-709 QPREQARES- ---------- --LVSTFRIR PRGRYVS--- ---------- ENSBTAP00000019285/1-712 QSHEQARET- ---------- --LVTTFKAR PRGRHIL--- ---------- ENSTTRP00000010918/1-676 QPRKQASET- ---------- --LVTTFKAR PRGRHTY--- ---------- bmy_10098T0/1-731 QPQKESKGSC RLREVKIWGY RELDEKYRER KRAEGSSLTI WAAQGSGGHS BACU009287/1-584 QPREQA---- ---------- ---------- ---------- ---------- 751 800 ENSP00000337510/1-709 -- ENSBTAP00000019285/1-712 -- ENSTTRP00000010918/1-676 -- bmy_10098T0/1-731 GD BACU009287/1-584 --