KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:26 2014 Check: 00 .. Name: ENSTTRP00000013542/1-1041 Len: 1046 Check: 7095 Weight: 1.00 Name: ENSP00000257408/1-1044 Len: 1046 Check: 6495 Weight: 1.00 Name: ENSBTAP00000019297/1-1037 Len: 1046 Check: 2069 Weight: 1.00 Name: bmy_07379T0/1-780 Len: 1046 Check: 6859 Weight: 1.00 Name: BACU020191/1-1033 Len: 1046 Check: 7869 Weight: 1.00 // 1 50 ENSTTRP00000013542/1-1041 MKPGCAA-SP GNEWIFFSTD E-NIRYRKTM SSGGL-RSXX XXXXXXXXXX ENSP00000257408/1-1044 MKPGCAAGSP GNEWIFFSTD EITTRYRNTM SNGGLQRSVI LSALILLRAV ENSBTAP00000019297/1-1037 --------SP GNEWIFFSTD ERNIRYRKTM SSGGLQRSVI LSAFILLRAV bmy_07379T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU020191/1-1033 --------SP GNEWIFFSTD ERNIRYRKTM SSGGLQRCVI LSAFILLQAV 51 100 ENSTTRP00000013542/1-1041 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000257408/1-1044 TGFSGDGRAI WSKNPNFTPV NESQLFLYDT FPKNFFWGIG TGALQVEGSW ENSBTAP00000019297/1-1037 TGFSGDGRTI WSKNPNFSPV NESQLFLYDT FPKNFFWGVG TGAFQVEGNW bmy_07379T0/1-780 ---------- ---------- ---------- ------MELG ---------- BACU020191/1-1033 TGFSGDGRAI WSKNPNFSPV NESQLFLYDT FPKNFFWGVG TGAFQVEGNW 101 150 ENSTTRP00000013542/1-1041 XXXXKGPSIW DHFIHTH-KN VNGTNSSSDS YIFLEKDLSA LDFLGVSFYQ ENSP00000257408/1-1044 KKDGKGPSIW DHFIHTHLKN VSSTNGSSDS YIFLEKDLSA LDFIGVSFYQ ENSBTAP00000019297/1-1037 KADGKGPSIW DHFIHTHLKN VNSMNSSSDS YIFLEKDLSA LDFIGVSFYQ bmy_07379T0/1-780 ---------- ---------- ---------- -----QELSA ---------- BACU020191/1-1033 KTDGKGPSIW DHFIHTQLKN VNGTNSSSDS YIFLEKDLSA LDFLGVSFYQ 151 200 ENSTTRP00000013542/1-1041 FSISWPRLFP NGTVSAANAK GLQYYNTLLN ALVLRNVEPI VTLYHWDLPL ENSP00000257408/1-1044 FSISWPRLFP DGIVTVANAK GLQYYSTLLD ALVLRNIEPI VTLYHWDLPL ENSBTAP00000019297/1-1037 FSISWPRLFP GGIVSAVNAK GLQYYDTLLN ALVLRNIEPI VTLYHWDLPL bmy_07379T0/1-780 ---------- ---------- ---------- ---------- ---------- BACU020191/1-1033 FSISWPRLFP DGIVSAANAK GLQYYNTLLN ALVLRNVEPI VTLYHWDLPL 201 250 ENSTTRP00000013542/1-1041 ALQEKYGGWK NETIIDIFND YATYCFQTFG DRVKYWITIH NPYLVAWHGY ENSP00000257408/1-1044 ALQEKYGGWK NDTIIDIFND YATYCFQMFG DRVKYWITIH NPYLVAWHGY ENSBTAP00000019297/1-1037 ALQEKYGGWK NETIIDFFND YATYCFQTFG DRVKYWITIH NPYLVAWHGY bmy_07379T0/1-780 ---------- ---------- ----C----- ---------- ---------- BACU020191/1-1033 ALQEKYGGWK NETIIDIFND YATYCFQMFG DRVKYWITIH NPYLVAWHGY 251 300 ENSTTRP00000013542/1-1041 GTGIHAPGEK GNLAAVYTVG HNLIKAHSKV WHNYNRNFRP HQKGLLSITL ENSP00000257408/1-1044 GTGMHAPGEK GNLAAVYTVG HNLIKAHSKV WHNYNTHFRP HQKGWLSITL ENSBTAP00000019297/1-1037 GTGIHAPGEK GNLAAVYTVG HNLIKAHSKV WHNYNRNFRP HQKGQLSITL bmy_07379T0/1-780 ---------- ---------- ---LSAHSKV WHNYNRNFRP HQKGWLSITL BACU020191/1-1033 GTGIHAPGEK GNLAAVYTVG HNLIKAHSKV WHNYNRNFRP HQKGRLSITL 301 350 ENSTTRP00000013542/1-1041 GSHWIEPNRS ENTMDILKCQ QSMVSVLGWF ANPIHGDGNY PEVMKKKLFS ENSP00000257408/1-1044 GSHWIEPNRS ENTMDIFKCQ QSMVSVLGWF ANPIHGDGDY PEGMRKKLFS ENSBTAP00000019297/1-1037 GSHWIEPNRS ENTMDILKCQ QSMVSVLGWF ANPIHRDGDY PEVMRKQLFS bmy_07379T0/1-780 GSHWIEPNRS ENTMDILKCQ QSMVSVLGWF ANPIHGDGNY PEVMKKKLFS BACU020191/1-1033 GSHWIEPNRS ENTMDILKCQ QSMVSVLGWF ANPIHGDGNY PEVMKKKLFS 351 400 ENSTTRP00000013542/1-1041 ILPLFSEAEK NEVRGTADFF AFSFGPNNFK PYNTMAKMGQ NVSLNLRDVL ENSP00000257408/1-1044 VLPIFSEAEK HEMRGTADFF AFSFGPNNFK PLNTMAKMGQ NVSLNLREAL ENSBTAP00000019297/1-1037 ILPRFSEAEK NEVRGTADFF AFSFGPNNFK PHNTMAKLGQ NVSLNLRDVL bmy_07379T0/1-780 ILPLFSEAEK NEVRGTADFF AFSFGPNNFK PYNTMAKMGQ NVSLNLRDVL BACU020191/1-1033 ILPLFSEAEK NEVRGTADFF AFSFGPNNFK PYNTMAKMGQ NVSLNLRDVL 401 450 ENSTTRP00000013542/1-1041 NWIKLEYGNP RILITENGWF TDSHVKTEDT TAIYMMKNFL NQVLQAIKFD ENSP00000257408/1-1044 NWIKLEYNNP RILIAENGWF TDSRVKTEDT TAIYMMKNFL SQVLQAIRLD ENSBTAP00000019297/1-1037 NWIKLEYGNP RILITENGWF TDSHVKTEDT TAIYMMKNFL NQVLQAIKFD bmy_07379T0/1-780 NWIKLEYGNP RILITENGWF TDSHVKTEDT TAIYMMKNFL NQVLQAIKFD BACU020191/1-1033 NWIKLEYGNP RILITENGWF TDSHVKTEDT TAIYMMKNFL NQVLQAIKFD 451 500 ENSTTRP00000013542/1-1041 EIRVFGYTAW SLLDGFEWQD AYTTRRGLFY VDFNSKQKER KPKSSAHYYK ENSP00000257408/1-1044 EIRVFGYTAW SLLDGFEWQD AYTIRRGLFY VDFNSKQKER KPKSSAHYYK ENSBTAP00000019297/1-1037 EIQVFGYTAW SLLDGFEWQD AYTTRRGLFY VDFNSKQKER KPKSSAHYYK bmy_07379T0/1-780 EIRVFGYTAW SLLDGFEWQD AYTTRRGLFY VDFNSKQKER KPKSSARYYK BACU020191/1-1033 EIRVFGYTAW SLLDGFEWQD AYTTRRGLFY VDFNSKQKER KPKSSARYYK 501 550 ENSTTRP00000013542/1-1041 QIIQENGFTL KESTPDVQGQ FPCDFSWGVT ESVLKXXXXX XXXXXXXXXX ENSP00000257408/1-1044 QIIRENGFSL KESTPDVQGQ FPCDFSWGVT ESVLKPESVA SSPQFSDPHL ENSBTAP00000019297/1-1037 QIIQENGFTV KESTPDVQGQ FPCDFSWGVT ESVLKPESVA SSPQFSDPHL bmy_07379T0/1-780 QIIHENGFTL KESTPDVQGQ FPCDFSWGVT ESVLKPESVA SSPQFSDPHL BACU020191/1-1033 QIIQENGFTL KESTPDVQGQ FPCDFSWGVT ESVLKPESVA SSPQFSDPHL 551 600 ENSTTRP00000013542/1-1041 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000257408/1-1044 YVWNATGNRL LHRVEGVRLK TRPAQCTDFV NIKKQLEMLA RMKVTHYRFA ENSBTAP00000019297/1-1037 YVWNVTGNRL LHRVEGVRLK TRPAQCTDFV SIKRQLEMLA RMKVTHYRFA bmy_07379T0/1-780 YVWNVTGNRL LHRVEGVRLK TRPAQCTDFV SVKRQLEMLA RMKVTHYRFA BACU020191/1-1033 YVWNVTGNRL LHRVEGVRLK TRPAQCTDFV SVKRQLEMLA RMKVTHYRFA 601 650 ENSTTRP00000013542/1-1041 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXR ELKLNISSKV TLYYPTHAHL ENSP00000257408/1-1044 LDWASVLPTG NLSAVNRQAL RYYRCVVSE- GLKLGISAMV TLYYPTHAHL ENSBTAP00000019297/1-1037 LDWPSILPTG NLSMANRQAL RYYRCVVSE- GLKLNISSMV TLYYPTHAHL bmy_07379T0/1-780 LDWPSILPTG DLSTVNRQAL RYYRCVVSE- GLKLNISSMV TLYYPTHAHL BACU020191/1-1033 LDWPSILPTG NLSTVNRQAL RYYRCVVSE- GLKLNISSMV TLYYPTHAHL 651 700 ENSTTRP00000013542/1-1041 GLPAPVLHSG GWLNRSTTKA FQDYADLCFQ ELGDLVKLWI TINEPNRLSD ENSP00000257408/1-1044 GLPEPLLHAD GWLNPSTAEA FQAYAGLCFQ ELGDLVKLWI TINEPNRLSD ENSBTAP00000019297/1-1037 GLPVPLLHSG GWLNRSTAEA FQDYADLCFR ELGDLVKLWI TINEPNRLSD bmy_07379T0/1-780 GLPAPLLHSG GWLNRSTTKA FQDYADLCFQ ELGDLVKLWI TINEPNRLSD BACU020191/1-1033 GLPTPLLHSG GWLNRSTTKA FQDYADLCFQ ELGDLVKLWI TINEPNRLSD 701 750 ENSTTRP00000013542/1-1041 IYDRSSNDTY WAAHHLMIAH ALAWHLYDQQ YRPAQRGVVS LSLHSDWAEP ENSP00000257408/1-1044 IYNRSGNDTY GAAHNLLVAH ALAWRLYDRQ FRPSQRGAVS LSLHADWAEP ENSBTAP00000019297/1-1037 IYEQSSNDTY WAAHHLLIAH ALAWHLYDRR YRPVQRGAVS LSLHSDWAEP bmy_07379T0/1-780 IYDRSSNDTY WAAHHLMIAH ALAWHLYDQQ YRPAQRGVVS LSLHSDWAEP BACU020191/1-1033 IYDRSSNDTY WAAHHLMIAH ALAWHLYDQQ YRPAQRGVVS LSLHSDWAEP 751 800 ENSTTRP00000013542/1-1041 ANPYADSHWK AAERFLQFEI AWFAEPLFKT GDYPLAMREY ITSKNRQGLT ENSP00000257408/1-1044 ANPYADSHWR AAERFLQFEI AWFAEPLFKT GDYPAAMREY IASKHRRGLS ENSBTAP00000019297/1-1037 ANPYADSHWK AAERFLQFEI AWFAEPLFKT GDYPLAMREY VAFKNRQGLA bmy_07379T0/1-780 ANPYADSHWK AAERFLQFEI AWFAEPLFKT GDYPLAMREY ITSKNRQGLT BACU020191/1-1033 ANPYADSHWK AAERFLQFEI AWFAEPLFKT GDYPLAMREY ITSKNRQGLT 801 850 ENSTTRP00000013542/1-1041 RSALPQFTEE EKRLVKGTAD FYALNHFTTR FVMHERQNGS NYDADRDIQF ENSP00000257408/1-1044 SSALPRLTEA ERRLLKGTVD FCALNHFTTR FVMHEQLAGS RYDSDRDIQF ENSBTAP00000019297/1-1037 RSTLPQFTEE ERRLVKGTAD FYALNHFTTR FVMHERQNGS TYDTDRDIQF bmy_07379T0/1-780 RSALPQFTEE ERRLVKGTAD FYALNHFTTR FVMHERQNGS NYDADRDIQF BACU020191/1-1033 RSALPQFTEE ERRLVKGTAD FYALNHFTTR FVMHERQNGS NYDADRDIQF 851 900 ENSTTRP00000013542/1-1041 LQDITCLSSP TRLAVIPWGE HKVLKWIRRN YGDVDVYITA SGIDDQSLEN ENSP00000257408/1-1044 LQDITRLSSP TRLAVIPWGV RKLLRWVRRN YGDMDIYITA SGIDDQALED ENSBTAP00000019297/1-1037 LQDITCLSSP TRLAVMPWGE RRVLKWIRRN YGDMDVYITA SGIDDQSLEN bmy_07379T0/1-780 LQDITCLSSP TRLAVIPWGE RKVLKWIRRN YGDVDVYITA SGIDDQSLEN BACU020191/1-1033 LQDITCLSSP TRLAVIPWGE RKVLKWIRRN YGDVDVYITA SGIDDQSLEN 901 950 ENSTTRP00000013542/1-1041 DELRKYYLEK YIQEALKAYL IDKIKIKGYY VFKLTEEKSR PRFGFFTSDF ENSP00000257408/1-1044 DRLRKYYLGK YLQEVLKAYL IDKVRIKGYY AFKLAEEKSK PRFGFFTSDF ENSBTAP00000019297/1-1037 DELRKYYLEK YIQEALKGYL IDKIKIKGYY VFKLTEEKSR PRFGFFTPDF bmy_07379T0/1-780 DELRKHYLEK YIQEALKAYL IDKIKIKGYY VFKLTEEKSR PRFGFFTSDF BACU020191/1-1033 DELRKHYLEK YIQEALKAYL IDKIKIKGYY VFKLTEEKSR PRFGFFTSDF 951 1000 ENSTTRP00000013542/1-1041 KAKSSIQFYN GLISNNGFLS KNSSPKCSQT QRNTECIVCL LLVQKKPLIF ENSP00000257408/1-1044 KAKSSIQFYN KVISSRGFPF ENSSSRCSQT QENTECTVCL FLVQKKPLIF ENSBTAP00000019297/1-1037 KAKSSIQFYN KLISNNGFLS ENSSPRCSQA QRNTECIVCL LLVQKKPLIF bmy_07379T0/1-780 KAKSSIQFYN ELISNNGFLS ENSSPRCSQT QRNTECIVCL LLVQKKPLIF BACU020191/1-1033 KAKSSIQFYN ELISNNGFLS ENSSPRCSQT QRNTECIVCL LLVQKKPLIF 1001 1050 ENSTTRP00000013542/1-1041 FGCCFFSTLV LLLSITVFHK RKRRKFWKAK NLQHIPLKKG Q-RVLS ENSP00000257408/1-1044 LGCCFFSTLV LLLSIAIFQR QKRRKFWKAK NLQHIPLKKG K-RVVS ENSBTAP00000019297/1-1037 FGCCFFSTLV LLLSITIFHK RKRRKIWKAK NSQHIPLKKG HSRVLS bmy_07379T0/1-780 FGCCFFSTLV LLLSITVFHK RKRRKFWKAK NLQHIPLKKG H-ESS- BACU020191/1-1033 FGCCFFSTLV LLLSITVFHK LKRRKFWKAK NLQHIPLKKG H-K---