KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:29 2014 Check: 00 .. Name: ENSP00000368720/1-611 Len: 677 Check: 3757 Weight: 1.00 Name: ENSBTAP00000019320/1-656 Len: 677 Check: 8565 Weight: 1.00 Name: ENSTTRP00000002991/1-606 Len: 677 Check: 7344 Weight: 1.00 Name: bmy_10005T0/1-608 Len: 677 Check: 9429 Weight: 1.00 Name: BACU018716/1-605 Len: 677 Check: 2384 Weight: 1.00 // 1 50 ENSP00000368720/1-611 MGNSHCVPQA PRRLRASFSR KPSLKGNRED SARMSAGLPG PEAARSGDAA ENSBTAP00000019320/1-656 MGNSHCVPQA PRRLRASFSR KPSLKGNRED GARKLAGLFG TEAGADRDTT ENSTTRP00000002991/1-606 MGNSHCVPQA PRRLRASFSR KPSLKGNRED GARKLVGLFG TEASPDGDTT bmy_10005T0/1-608 MGNSHCVPQA PRRLRASFSR KPSLKGNRED GARKLVGLFG TEASLDGDTT BACU018716/1-605 MGNSHCVPQA PRRLRASFSR KPSLKGNRED GARKLVGLFG TEASPDGDTT 51 100 ENSP00000368720/1-611 ANKLFHYIPG TDILDLENQR ENLEQPFLSV FKKGRRRVPV RNLGKVVHYA ENSBTAP00000019320/1-656 ADKIFHYIPG TNIPGLQSQQ EILEQPFLSV FKEGRRRAAV RSLGSVVHYA ENSTTRP00000002991/1-606 ADKIFRFIPG TSIPSLESQQ ENLEQPFLSV FKAGQRRAPV RSLGTVVHYT bmy_10005T0/1-608 ADKIFRYIPG TNIPSLERQQ ENLEQPFLSV FKAGQRRAPV RSLGKVVHYT BACU018716/1-605 ADKIFRYIPG TNIPTLESQQ ENLEQPFLSV FKAGQRRAPV RSLGKVVHYT 101 150 ENSP00000368720/1-611 KVQLRFQHSQ DVSDCYLELF PAHLYFQAHG SEGLTFQGL- -LPLTELS-- ENSBTAP00000019320/1-656 KVQLRFQHSQ NVSDCYLELF PSHLYFQAHG PEGLTFQGL- -LPLMELS-- ENSTTRP00000002991/1-606 KVQLRFQHSQ DISDCYLELF PSHLYFQAHG SEGLTFQVIS GSPTLEEPFL bmy_10005T0/1-608 KVQLRFQHSQ DISDCYLELF PSHLYFQAHG SEGLIFQGL- -LPLMELS-- BACU018716/1-605 KVQLRFQHSQ DISDCYLELF PSHLYFQAHG SEGLIFQWL- -PPTLEEPFL 151 200 ENSP00000368720/1-611 -----VCPLE GSREHAFQIT ---------- ---------- ---------- ENSBTAP00000019320/1-656 -----VCPLE GSREHAFQIT GVWEHGMGTR SVPGWGGGQQ TEGLQSCACG ENSTTRP00000002991/1-606 WPLAAYSAPP P--------- ---------- ---------- ---------- bmy_10005T0/1-608 -----VCPLE GSREHAFQIT ---------- ---------- ---------- BACU018716/1-605 WPLALLCPSP A--------- ---------- ---------- ---------- 201 250 ENSP00000368720/1-611 ---------- -GPLPAPLLV LCPSRAELDR WLYHLEKQTA LLGGPRRCHS ENSBTAP00000019320/1-656 LWPSPLCPSP AGPLPAPLLV LCPSQAELGR WLYHLEKQIA LVGGVPRCPP ENSTTRP00000002991/1-606 ---------- -GPLPAPLLV LCPSQAELDR WLYHLEKQIA LVGGVPRRHP bmy_10005T0/1-608 ---------- -GPLPAPLLV LCPSQAELDR WLYHLEKQIA LVGGVPRCHP BACU018716/1-605 ---------- -GPLPAPLLV LCPSQAELDR WLYHLEKQIA LVGGVPRCHP 251 300 ENSP00000368720/1-611 APP------- -----QRRLT RLRTASGHEP GGSAVCASRV KLQHLPAQEQ ENSBTAP00000019320/1-656 EPLQGPTEDA LPCTLQHRLT RLRTASGRQV MGSAICASRV KLQHLPSQEQ ENSTTRP00000002991/1-606 APPQGPPESE LPWTLQRRLT PLRTASGLQV VGTAICASRV KLQHLPSQEQ bmy_10005T0/1-608 APPQGPPENE LPWTLQHRLT PLRTASGLQV VGTAVCASRV KLQHLPSQDQ BACU018716/1-605 APPQGPPENE LPWTLQHRLT PLQTASGLQV VGTAVCASRV KLQHLPSQEQ 301 350 ENSP00000368720/1-611 WDRLLVLYPT SLAIFSEELD GLCFKGELPL RAVHINLEEK EKQIRSFLIE ENSBTAP00000019320/1-656 WDRLLVLYPT SLAIFSEEAD GLCFKGELPL SAIHINLEER EKQIRSFLIE ENSTTRP00000002991/1-606 WDRLLVLYPT SLAIFSEEAD GLCFKGELPL SAIHINLNET EKQIRSFLIE bmy_10005T0/1-608 WDRLLVLYPT SLAIFSEEAD GLCFKGELPL SAIHINLEER GKQIRSFLIE BACU018716/1-605 WDRLLVLYPT SLAVFSEEAD GLCFKGELPL SAIRINLEER DKQIRSFLIE 351 400 ENSP00000368720/1-611 GPLINTIRVV CASYEDYGHW LLCLRAVTHR EGAPPLPGAE SFPG----SQ ENSBTAP00000019320/1-656 GRLINTIRVV CASYEDYSHW LLCLQTVCQE DRASPPLGPE SLPGLRAPTQ ENSTTRP00000002991/1-606 GRLINTIRVV CASYEDYGHW LLCLQSACRG DRTSPLPGPE SFPGLRA--- bmy_10005T0/1-608 GRLINTIRVV CASYEDYGHW LLCLQTVCRG DRASPPPGPE SFPGLQAPPQ BACU018716/1-605 GRLINAIRVV CASYEDYGHW LLCLQTACRG DRASPPPGPE SFPGLQAPPQ 401 450 ENSP00000368720/1-611 VMGSGRGSLS SGGQTSWDSG CLAPPSTRTS HSLPESSVPS TVGCSSQHTP ENSBTAP00000019320/1-656 VVASGRGSLS SDARTSWDSG CPAPASTCTS HSLPESSAPS TAGCPARPPL ENSTTRP00000002991/1-606 -VGSGRGSLS SDGRTSWDSG CPAHASNHTS HSTPESTG-- --GCPARPAP bmy_10005T0/1-608 VVGSGRGSLS SDGRTSWDSG CPAAASSR-- -STPESAA-- --GCPARPAP BACU018716/1-605 VVGSGRGSLS SDGRTSWDSG YPAAASSR-- -STPESAA-- --GCPARPAP 451 500 ENSP00000368720/1-611 DQANSDRASI GRRRTELRRS GSSRSPGSKA RAEGRGPVTP LHLDLTQLHR ENSBTAP00000019320/1-656 EQANPGCTSI GGHRAKLRRG GSSRSPRNKA RAERPGPAAL LHLDLT---K ENSTTRP00000002991/1-606 EQASPGCTSV GGHKAKLRRA GSNRSPRSKA QGEGPGPATP LHLDLT---K bmy_10005T0/1-608 EQASPGCTSV GGHKAKLRWA GSNRSPRSQA QGEGPGPAIP LHLDLT---K BACU018716/1-605 EQASPGCTSV GGHKAKLRRA GSNRSPRSKA QGEGPGPAIP LHLDLT---K 501 550 ENSP00000368720/1-611 LSLESSPDAP DHTSETSHSP LYADPYTPPA TSHRRVTDVR GLEEFLSAMQ ENSBTAP00000019320/1-656 LSLDGGTEAP DHSLETPHSP LYADPYTPPA TSHRKITDVQ NLDEFLSAMQ ENSTTRP00000002991/1-606 LRLEDGPEAP DHSLETPHSP LYADPYTPPA TSRRRVXXXX XXXXFLSAMQ bmy_10005T0/1-608 LRLEDGPEAP DHSLETPHSP LYADPYTPPA TSHRRVTDIQ DLDKFLSAMQ BACU018716/1-605 LRLEDGPEAP DHSLETPHSP LYADPYTPPA TSHRRVTDIQ DLDKFLRAMQ 551 600 ENSP00000368720/1-611 SARGPTPSSP LPSVPVSVPA SDPRSCSSGP AGPYLLSKKG ALQSRAAQRH ENSBTAP00000019320/1-656 STLGPEPSSP FCSIPVSEPV SDS---SCGL SGPHLLSEKA VPRARASRHH ENSTTRP00000002991/1-606 SSLG-LPSSP FPFGPVSVPV SDP---SSGF SGPHLLSEKG VPQARASQRH bmy_10005T0/1-608 SSLGPEPSNP FPLVPVSVPV SDP---SSGL SGPHLLSEKG VLQARAPQRH BACU018716/1-605 SSLGPEPSNP FPLVPVSVPV SDP---SSGL SGPHLLSEKG VLQARASQRH 601 650 ENSP00000368720/1-611 RGSAKDGGPQ PPDAPQLVSS AREGSPEPWL PLTDGRSPRR SRDPGYDHLW ENSBTAP00000019320/1-656 RASIKGWGPR PPDSPQLVSP EKEASPDPSP PPPDGVPRP- ----GYGSSQ ENSTTRP00000002991/1-606 RGSIKGRGSR PPGSPQFVSP AREVAPEPPP PPPDGRPPR- ----SSNSAR bmy_10005T0/1-608 RGSIKGRGSR PPGSPQLVSP AREVAPEPPP PPPDGRPPR- ----SYDSVW BACU018716/1-605 RSSIKGRGSR PPGSPQLVSP AREVAPEPPP PPPDGRPPR- ----SYDSVW 651 700 ENSP00000368720/1-611 DETLSSSHQK CPQLGGPEAS GGLVQWI ENSBTAP00000019320/1-656 DKALSPSQRR GPR-GAPEPE QGLIQWI ENSTTRP00000002991/1-606 DKALSPSHQR WPR-GAAEAE GGLVQWI bmy_10005T0/1-608 DKALSPSHQR WPR-GAPEAE GGLVQWI BACU018716/1-605 DKALSPSHQR WPR--APEAE GGLVQWI