KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:31 2014 Check: 00 .. Name: ENSP00000356481/1-928 Len: 956 Check: 1973 Weight: 1.00 Name: ENSBTAP00000019338/1-933 Len: 956 Check: 2743 Weight: 1.00 Name: ENSTTRP00000010735/1-909 Len: 956 Check: 6030 Weight: 1.00 Name: bmy_04393T0/1-941 Len: 956 Check: 6344 Weight: 1.00 Name: BACU001526/1-537 Len: 956 Check: 8322 Weight: 1.00 // 1 50 ENSP00000356481/1-928 MGGSASSQLD EGKCAYIRGK TEAAIKNFSP YYSRQYSVAF CNHVRTEVEQ ENSBTAP00000019338/1-933 MGGSASSQLD ESKCTYIRGK TEAAIKNFSP YYSRQYSVAF CNHVRSEVEQ ENSTTRP00000010735/1-909 MGGSASSQLD EGKCAYIRGK TEAAIKNFSP YYSRQYSVAF CNYVRSEVEQ bmy_04393T0/1-941 MGGSASSQLD EGKCAYIRGK TEAAIKNFSP YYSRQYSVAF CNYVRSEVEQ BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000356481/1-928 QRDLTSQFLK T--------K PPLAPGTILY EAELSQFSED IKKWKERYVV ENSBTAP00000019338/1-933 QRDLTSQFLK T--------K PLLEPGTVLY EGELLQFAED IKKWKERYVV ENSTTRP00000010735/1-909 QRDLTSQFLK T--------K PPLEPGTVLY EAELSQFAED IKKWKERYVV bmy_04393T0/1-941 QRDLTSQFLK TKLIAFIFFK PPLEPGTVLY EAELSQFAED IKKWKERYIV BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000356481/1-928 VKNDYAVESY ENKEAYQRGA APKCRILPAG GKVLTSEDEY NLLSDRHFPD ENSBTAP00000019338/1-933 VKNDFAVESY ENREAYQKGA PPKSRILPAG GKVLTSEDEY NLLSDRHFPD ENSTTRP00000010735/1-909 VKNDFAVESY ENKEAYQRGA PPKSRILPAG GKVLTSEDEY GLLSDRHFPD bmy_04393T0/1-941 VKNDFAVESY ENKEAYQRGA PPKSRILPAG GKVLTSEDEY GLLSDRHFPD BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000356481/1-928 PLASSEKENT QPFVVLPKEF PVYLWQPFFR HGYFCFHEAA DQKRFSALLS ENSBTAP00000019338/1-933 PIASNEKENM QPFVVLPKEF PVYLWQPFLR HGYFCFQDAA DQKKFSALLS ENSTTRP00000010735/1-909 PIASSEKENT QPFVVLPKEF PVYLWQPFLR HGYFCFQNAA DQRKFSALLS bmy_04393T0/1-941 PIASSEKENT QPFVVLPKEF PVYLWQPFLR HGYFCFQDAA DQKKFSALLS BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000356481/1-928 DCVRHLNHDY MKQMTFEAQA FLEAVQFFRQ EKGHYGSWEM ITGDEIQILS ENSBTAP00000019338/1-933 DCIRHLNHDY MKQTTFEAQA FLEAVQFFRQ EKGHYGSWEM VTGDEVQILS ENSTTRP00000010735/1-909 DCIRHLNHDY MKQTTFEVQA FLEAVQFFRQ EKGHYGSWEM ITGDEVQILS bmy_04393T0/1-941 DCIRHLNHDY MKQTTFEVQA FLEAVQFFRQ EKGHYGSWEM ITGDEVQILS BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000356481/1-928 NLVMEELLPT LQTDLLPKMK GKKNDRKRTW LGLLEEAYTL VQHQVSEGLS ENSBTAP00000019338/1-933 NLVMEELMPT LQTDILPKMK GKKNDRKRAW FGLLEEAYHL VQHRVSEGLS ENSTTRP00000010735/1-909 NLVMEELMPT LQTDILPKMK GKKNDRKRAW FGLLEEAYNL VRHQVSEGLS bmy_04393T0/1-941 NLVMEELMPT LQTDILPKMK GKKNDRKRAW FGLLEEAYNL VRHQVSEGLS BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000356481/1-928 ALKEECRALT KGLEGTIRSD MDQIVNSKNY LIGKIKAMVA QPAEKSCLES ENSBTAP00000019338/1-933 ALKEECRALT KGLEGTIRSD MDQIVNSKNF LIGKIKAMVA QPAERSCAES ENSTTRP00000010735/1-909 ALKEECRALT KGLEGTIRSD MDQIVNSKNF LIGKIKAMVA QPAERSCAES bmy_04393T0/1-941 ALKEECRALT KGLEGTIRSD MDQIVNSKNF LIGKIKAMVA QPAERSCAES BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000356481/1-928 VQPFLASILE ELMGPVSSGF SEVRVLFEKE VNEVSQNFQT TKDSVQLKEH ENSBTAP00000019338/1-933 VQPFLGSILE ELMGPVSSGF SELRSLFEKE VDELSQSFQT TKDSAQLKEH ENSTTRP00000010735/1-909 VQPFLASILE ELMGPVSSGF SEVRSLFEKE VDELNQNFQS TKDSAQLKEH bmy_04393T0/1-941 VQPFLASILE ELMGPVSSGF SEVRSLFEKE VDELNQNFQT TKDCAQLKEH BACU001526/1-537 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000356481/1-928 LDRLMNLPLH SVKMEPCYTK VNLLHERLQD LKSRFRFPHI DLVVQRTQNY ENSBTAP00000019338/1-933 LEQLMDLPLD SVKMEPCYNK VNLLQEHLQD LKSRFRFPHI DLVVQRTQNY ENSTTRP00000010735/1-909 LDRLMNLPLD SVKMEPCYSK VNLLQEHLQD LKSRFRFPHI DLVVQRTQNY bmy_04393T0/1-941 LDRLMNLPLD SVKMEPCYSK VHLLQEHLQD LKSRFRFPHI DLVVQRTQNY BACU001526/1-537 ----MNLPLD SVKMEPCYSK VHLLQEHLQD LKSRFRFPHI DLVVQRTQNY 451 500 ENSP00000356481/1-928 MQELMENAVF TFEQLLSPHL QGEASKTAVA IEKVKLRVLK QYDYDSSTIR ENSBTAP00000019338/1-933 MQELMENAIF TFEQLLSPHL QGEASKTTVA IEKVKLRVLK QYDYDSSTIR ENSTTRP00000010735/1-909 MQELMENAVF TFEQLLSPHL QGEASKTTVA IEKVKLRVLK QYDYDSSTIR bmy_04393T0/1-941 MQELMENAVF TFEQLLSPHL QGEASKTTVA IEKVKLRVLK QYDYDSSTIR BACU001526/1-537 MQELMESAVF TFEQLLSPHL QGEASKTTVV IEKVKLRVLK QYDYDSSTIR 501 550 ENSP00000356481/1-928 KKIFQEALVQ ITLPTVQKAL ASTCKPELQK YEQFIFADHT NMIHVENVYE ENSBTAP00000019338/1-933 KRIFQEALVQ ITLPTLQKAL ASVCKPELQK YEQYIFADHT NMIHVENVYE ENSTTRP00000010735/1-909 KRIFQEALVQ ITLPTVQKAL ASVCKPELQK YEQFIFADHT NMIHVENVYE bmy_04393T0/1-941 KRIFQEALVQ ITLPTVQKAL ASVCKPELQK YEQFIFADHT NMIHVENVYE BACU001526/1-537 KRIFQEALVQ ITLPTVQKAL ASVCKPELQK YEQFIFADHT NMIHVENVYE 551 600 ENSP00000356481/1-928 EILHQILLDE TLKVIKEAAI LKKHNLFEDN MALPSESVSS LTDLKPPTGS ENSBTAP00000019338/1-933 EILHQILLDE SLKVIKEAAI LKKHNLFEDN MALPSESVSS LTDLKTPAGS ENSTTRP00000010735/1-909 EILHQILLDE TLKVIKEAAI LKKHNLFEDN MALPSESVSS LTDLKTPAGS bmy_04393T0/1-941 EILHQILLDE TLKVIKEAAI LKKHNLFEDN MALPSESVSS LTDLKTPAGS BACU001526/1-537 EILHQILLDE TLKVIKEAAI LKKHNLFEDN MALPSESVSS LTDLKTPAGS 601 650 ENSP00000356481/1-928 NQASPARRAS AILPGVLGSE TLSNEVFQES EEEKQPEVPS SLAKGESLSL ENSBTAP00000019338/1-933 NQASPARRAS AVLPGVSESE ILSNEVFQEA GEMKQPEVPS PLAREEGLSL ENSTTRP00000010735/1-909 NQASPARRAS AILPEVPDSE ILSNEVFQES GEKKQPGV-- ---------- bmy_04393T0/1-941 NQASPARRAS AILPGVPDSE ILSNEVFQES GEKKQPGVPS PLAKRESLCF BACU001526/1-537 NQASPARRAS AILPGVPDSE ILSNEVFQES GEKKQPGVPS PLAKGESLCF 651 700 ENSP00000356481/1-928 PGPSPPPDGT EQVIISRVDD PVVNPVATED TAGLPGTCSS ELEFGGTLED ENSBTAP00000019338/1-933 PVSSPPPDGD RQVIDSSIDG PVVNLVATEV TAGALGTHLS QPELEETPED ENSTTRP00000010735/1-909 PMPSPPPDGD GQVIISSTDD PVVNPVAAED TAGALGKHSS ELEFGETHEG bmy_04393T0/1-941 PVPSPPPDGE GQVIISSTDD PVVNPVAAED TAGALGKHSS EVEFGETHEG BACU001526/1-537 PVPSPPPDGD GQVIISSTDD PVVNPVAAED TAGALGEHSS ELEFGETHEG 701 750 ENSP00000356481/1-928 EEPAQEEPEP ITASGSLKAL RKLLTASVEV PVDSA-PVME EDTNGESHVP ENSBTAP00000019338/1-933 REPTQEDAEP RSAAGSLKEL RNLLTVTAEV TGESAVLEVE KDTHEEALVP ENSTTRP00000010735/1-909 QEPTQEKPEP TSALGSLKEL RNLLMVTTEV PGESAAPEIE KDTSKETLVP bmy_04393T0/1-941 QEPTQEKPEP TSALGSLKEL RNLLAVTIEV PVESAAPEIE KDTSKETLVP BACU001526/1-537 QEPTQEKPEP TSALGSLKEL RNLLAVTIEV PVESAAPEIE KDTSKETLVP 751 800 ENSP00000356481/1-928 QENEEEEE-- ---KEPSQAA AIHPDNCEES EVSEREAQPP CP--EAHGEE ENSBTAP00000019338/1-933 QDIEKEEEAT QIDTEASQAS ASGQDNCEES EVGEGEAHGP TPKAEASGVE ENSTTRP00000010735/1-909 QEIEKEEETT QIYTETDQAA ASSQVNSEES EVSEREVHPP SPEAEACGVE bmy_04393T0/1-941 QEIEKEEETT QIYTETNQAA ASSQVNGEES EASEREAHPP SPEAEADGVE BACU001526/1-537 QEIEKEEETT QIYTETNQAA ASSQVNGEES EASEREAHPP SPEAEAGGVE 801 850 ENSP00000356481/1-928 LGGFPEVGSP ASPPASGGLT E-----EPL- ------GPME GELPGEACTL ENSBTAP00000019338/1-933 LGEFPD---- -AQPTCGGLS EGARGPDPTE EPGEAGELTE SELTGDASGL ENSTTRP00000010735/1-909 LGASPE---- -AQPACGGLS E-----GPL- ------EPTE RELTAGSSGL bmy_04393T0/1-941 LGASPE---- -AQPACGGLS EGARGPGPLE EPAEAGEPTE RELMAGASGL BACU001526/1-537 LGASPE---- -AQPACGGLS EGARGPGPLE EPAEVGEPTE RELTAGASGL 851 900 ENSP00000356481/1-928 TAHEGRGGKC TEEGDASQQE GCTLGSDPIC LSESQVSEEQ EEMGGQSSAA ENSBTAP00000019338/1-933 GTLEGGGPVC SVEAEAVSLE ACVFRSDSIS PRESQVSVEE EAVGGSCSTA ENSTTRP00000010735/1-909 DALEGGGPRC AVEAEAMPQE GCKLSCDPVS PGESQVSLQE EAVGGSHSTA bmy_04393T0/1-941 DALEGGGPRC TAEAEAMTQE GCKLSSDPVS PSESQVSLEE EAVGGSRSTA BACU001526/1-537 DALEGGGPRC AAEAEAMPQE GCKLSCDPVS PSESQVSLEE EAVGGSHSPA 901 950 ENSP00000356481/1-928 QATASVNAEE IKVARIHECQ WVVEDAPNPD VLLSHKDDVK EGEGGQESFP ENSBTAP00000019338/1-933 QPATSEDAQE RKADPVHECQ WVVENVANTD TLDTQREDP- ---------P ENSTTRP00000010735/1-909 QATASVEAKK SKATRVHECQ WVVESDADTY SLDSQREDP- ---------P bmy_04393T0/1-941 QATASVEAKE SKAAHVYECQ WVVESEADTD CRDSQREDP- ---------P BACU001526/1-537 QATASVEAKE SKAARVYECQ WVVESEADTD SRDSQREDP- ---------P 951 1000 ENSP00000356481/1-928 ELPSEE ENSBTAP00000019338/1-933 EPPSEE ENSTTRP00000010735/1-909 ERPSEE bmy_04393T0/1-941 ERPSEE BACU001526/1-537 ERPSEE