KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:31 2014 Check: 00 .. Name: ENSP00000395772/1-549 Len: 552 Check: 8572 Weight: 1.00 Name: ENSTTRP00000008129/1-341 Len: 552 Check: 1370 Weight: 1.00 Name: ENSBTAP00000019339/1-550 Len: 552 Check: 4421 Weight: 1.00 Name: bmy_11568T0/1-547 Len: 552 Check: 8872 Weight: 1.00 Name: BACU005568/1-547 Len: 552 Check: 9352 Weight: 1.00 // 1 50 ENSP00000395772/1-549 MKRPKLKKAS KRMTCHKRYK IQKKVREHHR KLRKEAKKRG HKKPRKDPGV ENSTTRP00000008129/1-341 -----LKKAS KRMTCHKRYK IQKKVREHHR KLRKEAKKRG RKKPRKDPGV ENSBTAP00000019339/1-550 MKRPKLKKAS KRMTCHKRYK IQKKVREHHR KLRKEAKKRG RKKPRKDPGV bmy_11568T0/1-547 MKRPKLKKAS KRMTCHKRYK IQKKVREHHR KLRKEAKKRG RKKPRKDPGV BACU005568/1-547 MKRPKLKKAS KRMTCHKRYK IQKKVREHHR KLRKEAKKRG RKKPRKDPGV 51 100 ENSP00000395772/1-549 PNSAPFKEAL LREAELRKQR LEELKQQQKL DRQKELEKKR KLETNPDIKP ENSTTRP00000008129/1-341 PNSAPFKEAL LREAELRKQR LEELKQQQKL DRQKEQDKKR RLGTDPVVEL ENSBTAP00000019339/1-550 PNSAPFKEAL LREAELRKQQ LEELKQQQKL DRQNERNKKR KLETDPDVKL bmy_11568T0/1-547 PNSAPFKEAL LREAELRKQR LEELKQQQKL DRQKEQDKKR RLETDLAVEL BACU005568/1-547 PNSAPFKEAL LREAELRKQR LEELKQQQKL DRQKEQDKKR RLETDPAVEL 101 150 ENSP00000395772/1-549 SNVEPMEKEF GLCKTENKAK SGKQNSKKLY CQELKKVIEA SDVVLEVLDA ENSTTRP00000008129/1-341 CNMEPVKEEF GQCKAK-KAK SSKQNPKRLY CQELKKXXXX XXXXXXXXXX ENSBTAP00000019339/1-550 SNTEPVTEEL GQRKAK-KAK TSKQNPKRLY CQELKKVIEA SDVVLEVLDA bmy_11568T0/1-547 SNMEPVKEEF GQCKAK-KAK SSKQNPKRLY CQELKKVIEA SDVVLEVLDA BACU005568/1-547 SNMEPVKEEF GQCKAK-KAK SSKQNPKRLY CQELKKVIEA SDVVLEVLDA 151 200 ENSP00000395772/1-549 RDPLGCRCPQ VEEAIVQSGQ KKLVLILNKS DLVPKENLES WLNYLKKELP ENSTTRP00000008129/1-341 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XLVPKENLEN WLSYLTKELP ENSBTAP00000019339/1-550 RDPLGCRCPQ VEEAIIRGGQ KKLVLVLNKS DLVPKENLEN WLSYLNKELP bmy_11568T0/1-547 RDPLGCRCPQ VEEAIVKGGQ KKLVLVLNKS DLVPKENLEN WLSYLTKELP BACU005568/1-547 RDPLGCRCPQ VEEAIVKGGQ KKLVLVLNKS DLVPKENLEN WLSYLTKELP 201 250 ENSP00000395772/1-549 TVVFRASTKP KDKGKITKRV KAKKNAAPFR SEVCFGKEGL WKLLGGFQET ENSTTRP00000008129/1-341 TVVFKASTNL KDKGKRIKXV KVKKKAAPFK SEVCVGKEGL WK-LEGFQET ENSBTAP00000019339/1-550 TVVFKASTQQ KDKRKRIKLV KVKKKAALSK SEVCVGKQGL WKLLEGFQKT bmy_11568T0/1-547 TVVFKASTNL KDKGKR---I KVKKKAAPFK SEVCVGKEGL WKLLGGFQET BACU005568/1-547 TVVFKASTNL KDKGKR---I KVKKKAAPFK SEVCVGKEGL WKLLGGFQET 251 300 ENSP00000395772/1-549 CSKAIRVGVI GFPNVGKSSI INSLKQEQMC NVGVSMGLTR SMQVVPLDKQ ENSTTRP00000008129/1-341 YGKAIHVGVI GFPNVGKSSI INSLKQERIC NVGVSMGLTR YMQVVPLDKQ ENSBTAP00000019339/1-550 SGKAIHVGVI GFPNVGKSSV INSLKQEQIC SVGVSMGLTR CMQLVPLDKQ bmy_11568T0/1-547 YGKAIHIGVI GFPNVGKSSI INSLKQERIC NVGVSMGLTR YMQVVPLDKQ BACU005568/1-547 YGKAIHIGVI GFPNVGKSSI INSLKQERIC NVGVSMGLTR YMQVVPLDKQ 301 350 ENSP00000395772/1-549 ITIIDSPSFI VSPLNSSSAL ALRSPASIEV VKPMEAASAI LSQADARQVV ENSTTRP00000008129/1-341 ITIIDSPSFI VSPLNSAIAL ALRSPASIEV VKPMEAASAI LSHADARQ-- ENSBTAP00000019339/1-550 ITIIDSPCFI VSPLNSAPAL ALRSPASIEV VRPLEAASAI LSQADAQQVV bmy_11568T0/1-547 ITIIDSPSFI VSPLNSAIAL ALRSPASIEV VKPMEAASAI LSHADARQVV BACU005568/1-547 ITIIDSPSFI VSPLNSAIAL ALRSPASIEV VKPMEAASAI LSHADARQVV 351 400 ENSP00000395772/1-549 LKYTVPGYRN SLEFFTVLAQ RRGMHQKGGI PNVEGAAKLL WSEWTGASLA ENSTTRP00000008129/1-341 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019339/1-550 LKFTVPVFTN SLEFFTSFAQ RRGLHQKGGS PNVEGAAKVL WSEWTGAFLG bmy_11568T0/1-547 LKYTVPDFKN SLEFFTSFAQ RRGLHQKGGS PNVEGAAKLL WSEWTGASLS BACU005568/1-547 LKYTVPDFQN SLEFFTSFAQ RRGLHQKGGS PNVEGAAKLL WSEWTGASLS 401 450 ENSP00000395772/1-549 YYCHPPTSWT PPPYFNESIV VDMKSGFNLE ELEKNNAQSI RAIKGPHLAN ENSTTRP00000008129/1-341 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019339/1-550 YYCHPPASWT PPPHFNESIV TDMKWGFDLE ELEKNNAHSI QAIKSPHLAS bmy_11568T0/1-547 YFCHPPTSWT -PPHFNESIV TDMKWGFNLE ELEKNNAHSI RAIRGPRLAS BACU005568/1-547 YFCHPPTSWT -PPHFNESIV TDMKWGFNLE ELEKNNAHSI QAIRGPRLAS 451 500 ENSP00000395772/1-549 SILFQSSGLT NGIIEEKDIH EELPKRKERK QEERE--DDK DSDQETVDEE ENSTTRP00000008129/1-341 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019339/1-550 SILFQSSGLT NGVIDENDIP EELLKQKKQK QEQES-YEDV KMDQGIVDEE bmy_11568T0/1-547 SILFQSSGLT NGVIEEKDIP EELPKQKERK QEEGGDYEDV NTDQECVDEE BACU005568/1-547 SILFQSSGLT NGVIEEKDIP EELPKQKEWK QEERGDYEDV NTDQECVDEE 501 550 ENSP00000395772/1-549 VDENSSGMFA AEETGEALSE ETTAGEQSTR SFILDKII-E EDDAYDFSTD ENSTTRP00000008129/1-341 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019339/1-550 GDDESLAMSP AEEACETLSE KSRADKQSAP SFVLDKMTEE EDDVYDFSTD bmy_11568T0/1-547 GDEKSSDMSP AEEACEALPE DSQADKQSAP SFILDKMTEE EDDAYDFSTD BACU005568/1-547 GDEKSSDMSP AEEACEALPE DSEADKQSAP SFILDKMTEE EDDAYDFSTD 551 600 ENSP00000395772/1-549 YV ENSTTRP00000008129/1-341 -- ENSBTAP00000019339/1-550 YV bmy_11568T0/1-547 YV BACU005568/1-547 YV