KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:33 2014 Check: 00 .. Name: ENSP00000360387/1-786 Len: 862 Check: 5555 Weight: 1.00 Name: ENSBTAP00000019348/1-847 Len: 862 Check: 2797 Weight: 1.00 Name: ENSTTRP00000006442/1-600 Len: 862 Check: 9625 Weight: 1.00 Name: bmy_00243T0/1-741 Len: 862 Check: 2038 Weight: 1.00 Name: BACU011303/1-155 Len: 862 Check: 3879 Weight: 1.00 // 1 50 ENSP00000360387/1-786 MKGTGIMDCA PKALLARALY DNCPDCSDEL AFSRGDILTI LEQHVPESEG ENSBTAP00000019348/1-847 ---------- --TLLAKALY DNHPDSADEL AFCRGDILTI LEQNVPESEG ENSTTRP00000006442/1-600 ---------- ---------- ---------- ---------- ---------- bmy_00243T0/1-741 ---------- --MFLARALY DNHPDCADEL AFCRGDILTI LEQNVPESEG BACU011303/1-155 ---------- --MFLARALY DNHPDCADEL AFCRGDILTI LEQNVPESEG 51 100 ENSP00000360387/1-786 WWKCLLHGRQ GLAPANRLQI LTEVAADRPC PPFLRGLEEA PASSEETYQV ENSBTAP00000019348/1-847 WWKCLLHGRQ GLAPANRLQI LAEASTDRPR PPFLKGLDNA PAISQETYEV ENSTTRP00000006442/1-600 ---------- ---------- ---------- ---------- ---------- bmy_00243T0/1-741 WWKCLLHGRQ GLAPANRLEI LVEAPADRPC PPFLRGPEDA STSSQETYEV BACU011303/1-155 WWKCLLHGRQ GLAPANRLEI LVEAPADRPC PPFLRGPEDA STSSQETYEV 101 150 ENSP00000360387/1-786 PTLPRPPTPG PVYEQMRSWA EGPQPPTAQV YEFPDPPTSA RIICEKTLSF ENSBTAP00000019348/1-847 PTLLNPSS-- PVYEQMKSWV EGPPPPTVQV YEVPDPPACA RIVCEKNLSF ENSTTRP00000006442/1-600 ---------- ---------- ---------- ---------- ---------- bmy_00243T0/1-741 PTLLNPSSPG PVYEQMKSWV EGPLPPTVQV YEVPDRPASA RIVCEKTLCF BACU011303/1-155 PTLLNPSSPG PVYEQMKSWV EGPPPPTVQV YEVPDPPASA RIVCEKTLCF 151 200 ENSP00000360387/1-786 PKQAILTLPR PVRASLPTLP SQVYDVPTQH RGPVVL---- ---------- ENSBTAP00000019348/1-847 PKQAIFMIPR HARTSLPALG CQVYDVPAQS RCPPTLKTTA ANSLYGLSPP ENSTTRP00000006442/1-600 ---------- ---------- ---------- ---------- ---------- bmy_00243T0/1-741 PK-------- ---------- ---------- ---------- ---------- BACU011303/1-155 PK-------- ---------- ---------- ---------- ---------- 201 250 ENSP00000360387/1-786 ----KEPE-K QQLYDIPASP KKAGLHPPDS QASGQGVPLI SVTTLRRGGY ENSBTAP00000019348/1-847 LIFSQEPG-T QQLYDIPPSP QKAALGPPAS QTNRQNIPPT SSIASRRGGC ENSTTRP00000006442/1-600 -----EPGKQ QQLYDILPSP QKAALGPPAS QPNGQSVPLM SSIALRRGSC bmy_00243T0/1-741 ----QEPGKQ QQLYDIPPRP QKAALGPPAS QPNGQSVPLM SSIALRRGSC BACU011303/1-155 ---------Q VSLF------ ---------- ---------- ---------- 251 300 ENSP00000360387/1-786 STLPNPQKSE WIYDTPVSPG KASVRNTPLT SFAEESRPHA LPSSSSTFYN ENSBTAP00000019348/1-847 NTLPSPQKSE WIYDTPVSLE KADVRNASPS SSVEKSGHHV LPRCMSSFHS ENSTTRP00000006442/1-600 NTLPSPQKSE WIYDTPVSLE KADVRNASLS SFVEKSGHRA LPRYMSSFHS bmy_00243T0/1-741 NTLPSPQKSE WIYDTPVSPE KADVRNSSLS SFVEKSGHRA LPRYMSSFHS BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000360387/1-786 PPSGRSRSLT PQLNNNVPMQ KKLSLPEIPS YGFLVPRGTF PLDEDVSYKV ENSBTAP00000019348/1-847 PPSSRAGTLS PHPQKNMPMQ KKLSLPEIPS YSFPIAKAAF PLDEAVSYKV ENSTTRP00000006442/1-600 PQNSRARTLS PHPQKNVPMQ KKLSLPEIPS HSFPPPRDAF PLDEGVSYKV bmy_00243T0/1-741 PQNXRATTLS PHPXKNVPMQ KKLSLPEIPS YSFPPARDAF PLDEGASYQV BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000360387/1-786 PSSFLIPRVE QQNTKPNIYD IPKATSSVSQ AGKELEKAKE VSENSAGHNS ENSBTAP00000019348/1-847 PSSFLIPRVE QQNTKPNIYD IPKARPRDPQ AGKELGKANV PSENSLDHNS ENSTTRP00000006442/1-600 PASFLISRVE QKNTRLNIYD VPKAVLSVPQ AGKELGKADG PSENSMDHNS bmy_00243T0/1-741 PSSFLISRVE QQNTKLNIYD VPKATPSVPQ AGKELAKADG PSDNSMDHNS BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000360387/1-786 SWFSRRTTSP SPEPDRLSGS SSDSRASIVS SCSTTSTDDS SSSSSEESAK ENSBTAP00000019348/1-847 PWFPSQAESL SPEPDSSSVS SSDSRASILS SCSSTSTDSS SSSFSEESAR ENSTTRP00000006442/1-600 SWFSGRAASP SPEPDGLSVS SSDSRASVLS SCSSTSSH-S SSSFSEESAK bmy_00243T0/1-741 SWFSGRAASL SPEPDSLSVS SSGSRASVLS SSSSTSSH-S SSSFSEESAR BACU011303/1-155 ---------- -PD------- ---------- ---------- ---------- 451 500 ENSP00000360387/1-786 ELSLDLDVAK ETVMALQHKV VSSVAGLMLF VSRKWRFRDY LEANIDAIHR ENSBTAP00000019348/1-847 ELPLDLDLAR ETVTVLQHKV ANSVGSLMLF VSRKWRFRDS LEANIDAIRR ENSTTRP00000006442/1-600 ELPLDLDLAK ETVTALQHKV DNSVAGLLLF VSRQWRFRDY LEANIHAIRR bmy_00243T0/1-741 ELPLDPDLAK ETATALQHKV DRSVAGLMLF VSRRWRFRDY LEANVHAIRR BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000360387/1-786 STDHIEESVR EFLDFARGVH GTACNLTDSN LQNRIRDQMQ TISNSYRILL ENSBTAP00000019348/1-847 AADRTEESLK EFLDFARGVC GTTCNLTNSN LQARIRDQLQ TISNSYQILL ENSTTRP00000006442/1-600 AADRIEESLR EFLDFACGVR GTACNLTDSK LQAKIRDQLQ TISNSYQILL bmy_00243T0/1-741 AADCVEESLR EFLDFACGVR GTACNLTDSK LQAKIRDQLQ TISNSYQILL BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000360387/1-786 ETKESLDNRN WPLEVLVTDS VQNSPDDLER FVMVARMLPE DIKRFASIVI ENSBTAP00000019348/1-847 ESKESLESCN WSLEVLVTDK IQNSPDDLER FVQVARMVPE DVKRFASIII ENSTTRP00000006442/1-600 ETKESLESCD WSLEVLVTNK VQNSLDDLER FVLTARMVPE DIKRFASLVI bmy_00243T0/1-741 ETKESLESCD WSLEVLVTNE VQNSLDDLER FVLTARMVPE DIKRFASLVI BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000360387/1-786 ANGRLLFKRN CEKEETVQLT PNAEFKCEKY IQPPQRETES HQKSTPSTKQ ENSBTAP00000019348/1-847 ANGRLLFKPN CEKEDPVQLT PSAEFKLAKS IQLPQREIES YQRNTPFHKQ ENSTTRP00000006442/1-600 ANGRLLFKPN CEKEDPMQLT PNAEFKLAKS IWLPQKEIES YQRNASFQKQ bmy_00243T0/1-741 ANGRLLFKPN CEKEDPAQLT PNAEFKLAKS IRLPQKEIES YQRNAPFQKQ BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000360387/1-786 REDEHSSELL KKNRANICGQ ---------- ---------- ---------- ENSBTAP00000019348/1-847 KESKHSPELL EKNRTNVCEQ KLPHLEEREK PILEQRSDEN SDLETQTHST ENSTTRP00000006442/1-600 RESKHSPELL KXXXXXXXXX ---------- ---------- ---------- bmy_00243T0/1-741 RESEHPPELL KKNRTNVCEQ ---------- ---------- ---------- BACU011303/1-155 ---------- RKNRS----- ---------- ---------- ---------- 701 750 ENSP00000360387/1-786 ---------- ---------- ------NPGP LIPQPSSQQT PERKPRLSEH ENSBTAP00000019348/1-847 FWLGDQGRQE GSELFNDMDK IAAFSENPSS LVPRPLSQQN PEKKTRLSEH ENSTTRP00000006442/1-600 ---------- ---------- ------NPSS LCPRPLSQQN PEKKIRLSEH bmy_00243T0/1-741 ---------- ---------- ------NPSS LSPRPLSQQN PGKKIRLSEH BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000360387/1-786 CRLYFGALFK AISAFHGSLS SSQPAEI-IT QSKLVIMVGQ KLVDTLCMET ENSBTAP00000019348/1-847 CRLYFGALFK AISVLNSSLQ NSQPPETFIT QSKLVITVGQ KLVDRLCRET ENSTTRP00000006442/1-600 CRLYFGALFK AIGVLHSSLG NGQPPEIFIA QSKLVIMVGQ KLVDTLCQET bmy_00243T0/1-741 CRLYFGALFK AIGVLNSSLG NSQPPEIFIT QSKLVIMVGQ KLVDTLCQET BACU011303/1-155 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000360387/1-786 QERDVRNEIL RGSSHLCSLL KDVALATKNA VLTYPSPAAL GHLQAEAEKL ENSBTAP00000019348/1-847 QERDVRNEIL RGSSCLCSLL KDLALATKHA VLQHPSPAAL QHLRAEAKKL ENSTTRP00000006442/1-600 QERDVRNEIL RGSSRLCSLL KDLALATKHA VLQHPSPAAL QHLQAEAKKL bmy_00243T0/1-741 QEKDVRNEIL RGSSCLCSLL KDLALATKHA ALQHPSPAAL QHLQAEAKKL BACU011303/1-155 ---------- RGR------- ---------- ---------- ---------- 851 900 ENSP00000360387/1-786 EQHTRQFRGT LG ENSBTAP00000019348/1-847 EQHAQQFRGT LE ENSTTRP00000006442/1-600 ERHTQQFRGM LE bmy_00243T0/1-741 ERHTQQFRGT LE BACU011303/1-155 ---------- --