KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:37 2014 Check: 00 .. Name: ENSBTAP00000019407/1-992 Len: 993 Check: 4934 Weight: 1.00 Name: ENSP00000274897/1-458 Len: 993 Check: 6943 Weight: 1.00 Name: ENSTTRP00000000700/1-455 Len: 993 Check: 7424 Weight: 1.00 Name: bmy_20339T0/1-514 Len: 993 Check: 8264 Weight: 1.00 Name: BACU012244/1-979 Len: 993 Check: 589 Weight: 1.00 // 1 50 ENSBTAP00000019407/1-992 MLPETQGLQR DCGNNCFQMN SCVLAGSVQT TPQVKAENNS EKRKLDYTLI ENSP00000274897/1-458 -----MELEK -------REK RSLLNKNLEE KLTVSA-GGS EAKPLIFTFV ENSTTRP00000000700/1-455 -----MEFEK -------HEK GSLLNQNLEE KLTVSS-GDS EAKPLIFTFV bmy_20339T0/1-514 ---------- ---------- ---------- ---VSS-GDS EAKPLIFTFV BACU012244/1-979 -----MEFEK -------HEK GSLLNQNLEE KLTVSS-GDS EAKPLIFTFV 51 100 ENSBTAP00000019407/1-992 VTSRKMVCTE QLPSNLGFVT KIPHQSNNNN SAYQNQFDSS EYFTLNVGRQ ENSP00000274897/1-458 PTVRRLPTHT QLADTSKFLV KIPEESSDKS PETVNRSKSN DYLTLNAGSQ ENSTTRP00000000700/1-455 PTVRRLPTQS QLGDTSKFIV KIPEEPSDKT PETVNRSDSN EYLTLNVGSQ bmy_20339T0/1-514 PTVRRLPTHS QLGDTSKFIV KIPEEPRDKT PETVNRSDSN EYLTLNIGSQ BACU012244/1-979 PTVRRLPTHS QLGDTSKFIV KIPEEPSDKT PETVNRSDSN EYLTLNVGSQ 101 150 ENSBTAP00000019407/1-992 QERERGALTC PSEAEDKASQ GRESKEKKPQ GMQQSDLFKA EYVFIVDSEG ENSP00000274897/1-458 QERDQAKLTC PSEVSGTILQ EREFEANKLQ GMQQSDLFKA EYVLIVDSEG ENSTTRP00000000700/1-455 RERDRGTLTY PLEVKDKASQ GRGFKANEPQ GMQQSDLFKA EYVFIVDSEG bmy_20339T0/1-514 RERDRGTLTY PLEVKDKASQ GRGFKASEPQ GMQQSDLFKA EYVFIVDSEG BACU012244/1-979 RERDRGTLTY PLEVKDKASQ GRGLKANEPQ GMQQSDLFKA EYVFIVDSEG 151 200 ENSBTAP00000019407/1-992 EEEVPGRKGD QGPPVGTGPP AARPASLAIS SSLASDAVRP KTRGADLQAP ENSP00000274897/1-458 EDEAASRKVE QGPPGGIGTA AVRPKSLAIS SSLVSDVVRP KTQGTDLKTS ENSTTRP00000000700/1-455 EDEAPSRQGE QGPPGGMGTT AARPTSLAIS SSLVSDVVRP KTRGADLQVL bmy_20339T0/1-514 EDEAPSRKGE QGPPGGMGTT AARPTSLAIS SSLVSDVVRP KTRGADLQVP BACU012244/1-979 EDEAPSRKGE QGPPGGMGTT AARPTSLAIS SSLVSDVVRP KTRGADLQFP 201 250 ENSBTAP00000019407/1-992 SHPERPQAMA SQQRHGQLTS PTASEQLARK PPAFSFVSPT NQKTPPAPGD ENSP00000274897/1-458 SHPEMLHGMA PQQKHGQ--- ---------- ---------- ---------- ENSTTRP00000000700/1-455 SHPEMPHGMA PQQKHGP--- ---------- ---------- ---------- bmy_20339T0/1-514 SHPEMPHGMA PQQKHGP--- ---------- ---------- ---------- BACU012244/1-979 SHPEMPHGMA PQQKHGPLTS PTASEQLACK PPAFSFVSPT NQKTPPVPVD 251 300 ENSBTAP00000019407/1-992 LASASVLEEF HSRRLDARGA LVEETTTYFQ TSAHSAPFFA PKGTSSTSQV ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 ---------- ---------- ---------- ---------- ---------- BACU012244/1-979 LAGASVLEEF HARRLDVSGA LVEETATYFQ TSAHSAPFFA PKGTSSTSQF 301 350 ENSBTAP00000019407/1-992 PQPAQLSGSP SSSPSTAQQN PGQTSEVLKK TVTSNVLSPR ESPRASSPSP ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 ---------- ---------- ---------- ---------- ---------- BACU012244/1-979 PHPAQLSGSH SSSPSAVQQK PGLTSEVLKK TVTSPVLSPR ESPRTSSPSL 351 400 ENSBTAP00000019407/1-992 ASGASLKSSA ASYIPVRIVT HSLSPSPRAF PSPFHGSSST VCSQASSSGS ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 ---------- ---------- ---------- ---------- ---------- BACU012244/1-979 SSGASLKSNS ASYIPVRIVT HSLSPSPKPF PSPFHGSSST VCSQASSSGN 401 450 ENSBTAP00000019407/1-992 LSRSGVKPPV PSRLSVLTAI LKSSPSHQRP LSPASCPTFS LNSLASSTLT ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 ---------- ---------- ---------- ---------- ---------- BACU012244/1-979 VSKSGVKSPV PSRLSLLTAI LKSNPSHQRP LSPASCPTFS LNSLASSRLT 451 500 ENSBTAP00000019407/1-992 LDQKVKQTPS TPKKSLSSCS LRSGSPEQRE NPVSDLSQPS FPFPSPTKAA ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 ---------- ---------- ---------- ---------- ---------- BACU012244/1-979 LDQKVKQTSP TPKKSLSSCS LRAGSPEQRE NQVSDLSQQS FPFPSSTKAA 501 550 ENSBTAP00000019407/1-992 PPPQASALFP PKQGGSSFAS VIVEKMPS-P TLKSSPVTSQ LQTGTSSSVG ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 ---------- ---------- ---------- ---------- ---------- BACU012244/1-979 PLPLASSLSP PKQGSSSLAS LNVEKMPSPP SLKSSPMISQ LQTSTSSSTG 551 600 ENSBTAP00000019407/1-992 LPPVPPSFSP LSSKGRQDAD PRGPGKPRDI CSHASTSPSS TLSSVSPPTN ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 ---------- ----GRQDAD LRGPGKPRDI SPHPSALASL ASSSVSPPTN BACU012244/1-979 LPPVPPSFSP LFSKGRQDAD LRGPGKPRDI SPHPSALASL ASSSVSPPTN 601 650 ENSBTAP00000019407/1-992 PRAMLSSPER RYHPSPALSN LINRSKSAQA PVSSQRQTPS TPPPAPVSSS ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 PRARLPSPEK CYHPSPTLSN LINRSKRASA PLSGQGQTPL APPPHPVSGA BACU012244/1-979 PRARLPSPEK CYHPSPTLSN LINRSKRASA PLSGQGQTPL APPPHPVSSA 651 700 ENSBTAP00000019407/1-992 SSASLPCLGS SALPLANPPT KTHQLSPSAL HPNLSLPSRL GKSESSISDH ENSP00000274897/1-458 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000700/1-455 ---------- ---------- ---------- ---------- ---------- bmy_20339T0/1-514 GSASLPQLGC SVLPRANPPT EVRHLSPSAL HPNLTLPSRI GKSESSISDH BACU012244/1-979 GSASLPQLGC SVLPRANPPT EVRHLSPSAL HPNLTLPSRI GKSESSISDH 701 750 ENSBTAP00000019407/1-992 RSSVSAPSPP FCLTRTKELS SPCALSMSAG PENKKPKQYK TKSSYKAFAA ENSP00000274897/1-458 ---------- ---------- ---------- -------QYK TKSSYKAFAA ENSTTRP00000000700/1-455 ---------- ---------- ---------- -------QYK TKSSYKAFAA bmy_20339T0/1-514 RSSVSSPSPP ISLTRTNELI SPCALSMSTG PENKKHKQYK TKSSYKAFAA BACU012244/1-979 RSSVSSPSPP ISLTRTNELI SPCALSMSTG PENKKHKQYK TKSSYKAFAA 751 800 ENSBTAP00000019407/1-992 IPTNTLLLEQ KALDEPAKTD SISKDSTLDP PLELCSPAQL RQQTEELCAT ENSP00000274897/1-458 IPTNTLLLEQ KALDEPAKTE SVSKDNTLEP PVELYFPAQL RQQTEELCAT ENSTTRP00000000700/1-455 IPTNTLLLEQ KALDEPAKTE SISKDNTLDP PLELCFPEQL RQQTEELCAT bmy_20339T0/1-514 IPTNTLLLEQ KALDEPAKTE SISKDNTLDP PLE------- ---------- BACU012244/1-979 IPTNTLLLEQ KALDEPAKTE SISKDNTLDP PLELCSPEQL RQQTEELCAT 801 850 ENSBTAP00000019407/1-992 IDKVLQDSLS MHSSDSPSSS LQTFLGSDTI KMPTTLPRAA GRETKYANLS ENSP00000274897/1-458 IDKVLQDSLS MHSSDSPSRS PKTLLGSDTV KTPTTLPRAA GRETKYANLS ENSTTRP00000000700/1-455 IDKVLQDSLS MHSSDSPSSS LQTFLGSDTM KMPTTLPRAA GRETKYANLA bmy_20339T0/1-514 ---------- ---------- ---------- ---------- ---------- BACU012244/1-979 IDKVLQDSLS MHSSDSPSSS LQTFLGSDTI KTPTTLPRAA GRETKYANLA 851 900 ENSBTAP00000019407/1-992 SPSSTVPESQ LTKPGVIRPA PVKSKILLKK EEEVYEPNPF SKYLEDNSDF ENSP00000274897/1-458 SPSSTVSESQ LTKPGVIRPV PVKSRILLKK EEEVYEPNPF SKYLEDNSDL ENSTTRP00000000700/1-455 SPSSTVSESQ LTKPGVIRPV PVKSKILLRK EEEVYEPNPF SKYLEEHSDF bmy_20339T0/1-514 ---------- -TKPGVIRPV PIKSKILLKK EEEVYEPNPF SKYLEEHSDF BACU012244/1-979 SPSSTVSESQ LTKPGVIRPV PIKSKILLKK EEEVYEPNPF SKYLEEHSDF 901 950 ENSBTAP00000019407/1-992 FSEQDVPAPP KPVSLHPLYQ TRLHPPAKSL LRPQTRPHAD GLTPGPFSHL ENSP00000274897/1-458 FSEQDVTVPP KPVSLHPLYQ TKLYPPAKSL LHPQTLSHAD CLAPGPFSHL ENSTTRP00000000700/1-455 FSDQDVPV-P KP-SLHP-YQ TKLH-PAKSL MHPQTLPHAD CLTPGPFSHL bmy_20339T0/1-514 FSEQDVPVPP KPVSLHPLYQ TKLHPPAKSL MHPQTLPHAD CLTPGPFSHL BACU012244/1-979 FSEQDVPVPP KPVSLHPLYQ TKLHPPAKSL MHPQTLPHAD CLTPGPFSHL 951 1000 ENSBTAP00000019407/1-992 SSFSLSDEQE NSHTLFSHNA YNKKGCDPKV EIPRHASKPD KRP ENSP00000274897/1-458 -SFSLSDEQE NSHTLLSHNA CNKL-SHPMV AIPEHEALDS KEQ ENSTTRP00000000700/1-455 SSFSLSDEQE NSHTLSSHNA YNKL-SHPMM AIPEHETLDS EEQ bmy_20339T0/1-514 SSFSLSDEQE NSHTLSSHNA YNK------- ---------- --- BACU012244/1-979 SSFSLSDEQE NSHTLSSHNA YNKL-SHPMM AIPEHETLDS EEQ