KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:07:37 2014 Check: 00 .. Name: ENSP00000291294/1-386 Len: 428 Check: 9299 Weight: 1.00 Name: ENSBTAP00000019413/1-386 Len: 428 Check: 9908 Weight: 1.00 Name: bmy_06586T0/1-424 Len: 428 Check: 9253 Weight: 1.00 Name: BACU002138/1-384 Len: 428 Check: 3714 Weight: 1.00 // 1 50 ENSP00000291294/1-386 ---------- ---------- ---------- ---------- MADSCRNLTY ENSBTAP00000019413/1-386 ---------- ---------- ---------- ---------- MADSCRNLTY bmy_06586T0/1-424 RGPRGGERGG GRRRGGPGYP SVATSHRGDP AGPGGCGRPG MADSCQNLTY BACU002138/1-384 ---------- ---------- ---------- ---------- MADSCQNLTY 51 100 ENSP00000291294/1-386 VRGSVGPATS TLMFVAGVVG NGLALGILSA RRPARPSAFA VLVTGLAATD ENSBTAP00000019413/1-386 VRDSVGPATS TLMFVAGVVG NGLALGILGA RRQSRPSAFA VLVTGLAVTD bmy_06586T0/1-424 VRDSVGPATS ALMFVAGVVG NGLALGILGA RRRSRSSAFA VLVTGLAVTD BACU002138/1-384 VRDSVGPATS ALMFVAGVVG NGLALGILGA RRRSRPSAFA VLVTGLAVTD 101 150 ENSP00000291294/1-386 LLGTSFLSPA VFVAYARNSS LLGLARGGPA LCDAFAFAMT FFGLASMLIL ENSBTAP00000019413/1-386 LLGTCFLSPA VFAAYARNSS LLGLARGRPA LCDAFAFAMT FFGLASTLIL bmy_06586T0/1-424 LLGTCFLSPA VFAAYARNSS LLGLARGRPA LCDAFAFAMT FFGLASTLIL BACU002138/1-384 LLGTCFLSPA VFAAYARNSS LLGLARGRPA LCDAFAFAMT FFGLASTLIL 151 200 ENSP00000291294/1-386 FAMAVERCLA LSHPYLYAQL DGPRCARLAL PAIYAFCVLF CALPLLGLGQ ENSBTAP00000019413/1-386 FAMAVERCLA LSHPYLYAQL DGPRRARLAL PAIYAFCTIF CSLPFLGLGQ bmy_06586T0/1-424 FAMAVERCLA LSHPYLYAQL DGPRRARLAL PAIYAFCTVF CSLPLLGLGQ BACU002138/1-384 FAMAVERCLA LSHPYLYAQL DGPRRARLAL PAIYAFCTVF CSLPLLGLGQ 201 250 ENSP00000291294/1-386 HQQYCPGSWC FLRMRWAQPG GAAFSLAYAG LVALLVAAIF LCNGSVTLSL ENSBTAP00000019413/1-386 HQQYCPGSWC FIRMRSAEPG GCAFSLAYAS LVALLVAAIV LCNGSVTLSL bmy_06586T0/1-424 HQQYCPGSWC FIRMRSAELG GCAFSLAYAS LVALLVAAII LCNGSVTLSL BACU002138/1-384 HQQYCPGSWC FIRMRSAELG GCAFSLAYAS LVALLVAAII LCNGSVTFSL 251 300 ENSP00000291294/1-386 CRMYRQQKRH QGSLGPRPRT GEDEVDHLIL LALMTVVMAV CSLPLT--IR ENSBTAP00000019413/1-386 CRMYRQQRRH QGSLVPGPRA GEDEVDHLIL LALMTGIMAV CSLPLTPQIR bmy_06586T0/1-424 CRMYRQQRRH HGSLVPGPRA GEDEVDHLIL LALMTGIMAV CSLPLT--IR BACU002138/1-384 CRMYRQQRRH HGSLVPGPRA GEDEVDHLIL LGLMTGIMAV CSLPLT--IR 301 350 ENSP00000291294/1-386 CFTQAVAPDS SSEMGDLLAF RFYAFNPILD PWVFILFRKA VFQRLKLWVC ENSBTAP00000019413/1-386 GFTQAIAPD- SSEMGDLLAF RFNAFNPILD PWVFILFRKS VFQRLKLWFC bmy_06586T0/1-424 GFTQAIAPD- SSEMGDLLAF RFNAFNPILD PWVFILFRKA VFQRLKLWFC BACU002138/1-384 GFTQAIAPD- SSEMGDLLAF RFNAFNPILD PWVFILFRKA VFQRLKLWFC 351 400 ENSP00000291294/1-386 CLCLGPAHGD SQTPLSQLAS GRRDPRAPSA PVGKEGSCVP LSAWGEGQVE ENSBTAP00000019413/1-386 CLYSRPAQGD SRTSLSQSAS GRKDSSAPPA LEGKKGNWVP LSAWGEGQGG bmy_06586T0/1-424 CLCPRPGQGN LQTSLSQPAS GRKGSRAPTA LGGKEGSWVH LSAWGEGQGA BACU002138/1-384 CLCPRPGQGD LQTSLSQPPS GRKGSRAPTA LGGKEGSWVH LSAWGEGQGA 401 450 ENSP00000291294/1-386 PLPPTQQSSG SAVGTSSKAE ASVACSLC ENSBTAP00000019413/1-386 PLPAVQLPT- STVGTPSKAG SEAACSLC bmy_06586T0/1-424 PLPVPQPSS- STVGTPSEVG SATACSLC BACU002138/1-384 PLPVPQPSS- STVGTLSKVG SETACSLC