KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:37 2014 Check: 00 .. Name: ENSP00000425493/1-839 Len: 885 Check: 5602 Weight: 1.00 Name: ENSBTAP00000019419/1-770 Len: 885 Check: 6042 Weight: 1.00 Name: ENSTTRP00000016425/1-746 Len: 885 Check: 2428 Weight: 1.00 Name: bmy_00861T0/1-603 Len: 885 Check: 1403 Weight: 1.00 Name: BACU018228/1-760 Len: 885 Check: 8189 Weight: 1.00 // 1 50 ENSP00000425493/1-839 MNKDYQKFWS SPSDPVHFEV DTSHEKVESM SESDTMNVSN LSQGVMLSHS ENSBTAP00000019419/1-770 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016425/1-746 ---------- ---------- ---------- ---------- ---------- bmy_00861T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU018228/1-760 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000425493/1-839 PICMETTGTT CDLPQNEIKN FERENEYEST LCEDAYGTLD NLLNDNNIEN ENSBTAP00000019419/1-770 ---------- ---------- ---------- ---------- ----DVNIGN ENSTTRP00000016425/1-746 ---------- ---------- ---------- ---------- -----VNIGN bmy_00861T0/1-603 ---------- ---------- ---------- ---------- ---------- BACU018228/1-760 ---------- ---------- ---------- ---------- ----DVNVGN 101 150 ENSP00000425493/1-839 YSTNALIQPV DTISISSLRQ FETVCKFHWV EAFDDEM--- ---------T ENSBTAP00000019419/1-770 YSQNVLTQPI DT-SISSLRQ FEPLCQFDQT DSFNNEI-AF QDLTESLSYT ENSTTRP00000016425/1-746 YSQNVLTQPV DT-SISSFRQ FEPLCKFHQP EAFNNEM--- ---------T bmy_00861T0/1-603 ---------- ---MIFLL-- ---------- ---------- ---------- BACU018228/1-760 YSQNVPAQPV DT-SISSFRQ FEPLCKFHQT EAFNNEMITF QNLTEGLSYT 151 200 ENSP00000425493/1-839 EKPEFQSQVY NYAKDNNIKQ DSFKEENPME TSVSANTDQL GNEYFRQPPP ENSBTAP00000019419/1-770 EEPELQHYVC DDAEDTNIQE DSFKEENPMG TSTFTHTDQF ALECVRQ-PS ENSTTRP00000016425/1-746 EEPEFQRHVY NYAEDTNIQE DSFKEENPKG TSTSTNKDQL VLKCVRQ-PP bmy_00861T0/1-603 ----FHTY-- ---------- ---------- ---------- ---------- BACU018228/1-760 EEPELQHHVY NYAEDTNIQE DSFKEENPKG TSTSTNKDQL VLECVRQ-PP 201 250 ENSP00000425493/1-839 RSPPLIHCSG EMLKFTEKSL AKSIAKESAL NPSQPPSFLC ---------- ENSBTAP00000019419/1-770 RSPPLIHCSE ETLKFMEMPL ANSNATESAL NPSQSQDFVC EEEVHSDVEQ ENSTTRP00000016425/1-746 RRPPLIHCSG EMLKFMEMSL ANSTAMESSL NPSQPQVFLC EENLHSDVEQ bmy_00861T0/1-603 ----FIYCNL ---------- ---------- ---------- ---------- BACU018228/1-760 RSPPLIHCSG EMLKFMEMSL ANSTAMESAL NPSQPQGFLC EENLHSDVEQ 251 300 ENSP00000425493/1-839 ---------- ---------- KTAVPSKEIQ NYGEIPEMSV SYEKEVTAEG ENSBTAP00000019419/1-770 PFYKENNFNL LDLRANYETE ERECSSKGVQ NSMDIPEMSV RHQKEVPEKG ENSTTRP00000016425/1-746 ALYKENSFNL LDLRVNYKTE EIAHSSKGIQ NSTDIPEMSV RHQKEVAVEG bmy_00861T0/1-603 ---------- ---------- QIAGSSKGIQ NSTDIPEMSV RHQKEVTVEG BACU018228/1-760 PLYKENSFNL LDLRANYKTE EIAGSSKGIQ NSTDIPEMSV RHQKEVAVEG 301 350 ENSP00000425493/1-839 VERPEIVSTW SSAGISWRSE ACRENCEMPD WEQSAESLQP VQEDMALNEV ENSBTAP00000019419/1-770 RWSPQMVSTW APTGICWSDG ASQEACLIPD AEQSLESLQP LEEDMALNEV ENSTTRP00000016425/1-746 RESPEIVSTW SPTGISWSGG ASWEDCMTPD REQSLESSQP LEEDMALNEV bmy_00861T0/1-603 RESPEIVSAW SPTGISWSGG AAREDCMTPD TEQSLESSQP LEEDMALNEV BACU018228/1-760 TESPEIVSTW SPTGISWSGG AAREDCMTPD TEQSLESSQP LEEDMALNEV 351 400 ENSP00000425493/1-839 LQKLKHTNRK QEVRIQELQC SNLYLEKRVK ELQMKITKQQ VFIDVINKLK ENSBTAP00000019419/1-770 LRKLKLANKE QETRIQDLEH RNTYLEKKVE ELQTNTTKQH VFVDIINKLK ENSTTRP00000016425/1-746 LRKLKHTNKE QQTLIQDLQR RNMYLEKKVE ELQKKTTKEH VFVDIINKLK bmy_00861T0/1-603 LRKLKRTNKE QQTLIQDLQR SNMYLEKKVE ELQMKTTKQH VFVDIINKLK BACU018228/1-760 LRKLKRTNKE QQTLIQDLQC SNMYLEKKVE ELQMKTTKQH VFMDIINKLK 401 450 ENSP00000425493/1-839 ENVEELIEDK YKIILEKNDT KKTLQNLEEV LANTQKHLQE SRNDKEMLQL ENSBTAP00000019419/1-770 EKVEELIEEK YRIKLEKNDT EKTLQSLHEI LVTTQNHLQE CRSEKETLQL ENSTTRP00000016425/1-746 ENVEELIEDK YRVMLEKNDT QKTLQNLHEI LVNTQKHLQE SRNEKETLQL bmy_00861T0/1-603 ENVEELIEDK YRVMLEKNDT EKTLQDLHEI LVNTQKHLQE SRNEKETLQL BACU018228/1-760 ENVEELIEDK YRVMLEKNDT EKTLQDLHEI LVNTQKHLQE SRNEKETLQL 451 500 ENSP00000425493/1-839 QFKKIKANYV CLQERYMTEM QQKNKSVSQY LEMDKTLSKK EEEVERLQQL ENSBTAP00000019419/1-770 EFKKLKGNYA SLEERYMT-- --------QC MEMDSALSKK EEEIERLQQL ENSTTRP00000016425/1-746 EFKKIKGNYV SLQERYMTEM QQKNKAANQC MEMDRALSKK EEEVERLQQL bmy_00861T0/1-603 EFKKIKGNYV SLQERYMTEI QQKNKAASQC MEMDRALSKK EEEVERLQQL BACU018228/1-760 EFKKIKDNYV SLQERYMTEM QQKNKAASQC MEMDRALSKK EEEVERLQQL 501 550 ENSP00000425493/1-839 KKELEKATAS ALDLLKREKE AQEQEFLSLQ EEFQKLEKEN LEERQKLKSR ENSBTAP00000019419/1-770 KGELEKATSA ALDLLKRERE TREQEVLSLR EEFQKRERKH LDERENLKSK ENSTTRP00000016425/1-746 KGELEKATTS ALDLLKKEKE TREQEFLSLQ EEFQKREKEN LDERQKLKSR bmy_00861T0/1-603 KGELEKATTS ALDLLKKEKE TREQEFLSLQ EEFQKREKEN LGERQKLKSR BACU018228/1-760 KGELEKATTS ALDLLKKEKE TREQEFLSLQ EEFQKREKEN LGERQKLKSR 551 600 ENSP00000425493/1-839 LEKLLTQVRN LQFMSENERT KNIKLQQQIN EVKNENAKLK QQVARSEEQN ENSBTAP00000019419/1-770 LEKLVAQVQK VQFLSDSEKA KNAELQQQID EVKNENTKHQ QQVARSEEQN ENSTTRP00000016425/1-746 LEKLVAQVQN LQFISDNEKA KNTELQQQIN KVKNENSKLQ QQVARSEEQN bmy_00861T0/1-603 LEKLVAQVQN LQFISDNEKA KNTELQQQIN KVKSENSKLQ QQVARSEEQN BACU018228/1-760 LEKLVAQVQN LQFISDNEKA KNTELQQQIN KVKNENSKLQ QQVGRSEEQN 601 650 ENSP00000425493/1-839 YVPKFETAQL KDQLEEVLKS DITKDTKTTH SNLLPDCSPC E-ERLNPADI ENSBTAP00000019419/1-770 CVPKCEIARL KEILEGVTES DVAKDTKMTH SNLFPNHSPC EEGSANPPDM ENSTTRP00000016425/1-746 YVPQCETAQR KENLEEGTES DMAKDAKMIH SDLFLNHSPC EGESPNPPDV bmy_00861T0/1-603 YVPKCEIAQL KENLEEGIES DMAKDAKMIH SNLFLNHSPC EGESLNPPDM BACU018228/1-760 YVPKCEIAQL KENLEEGIES DMAKDAKMIH SNLFLNHSPC EGESLNPPDM 651 700 ENSP00000425493/1-839 KRASQLASKM HSLLALMVGL LTCQDIINSD AEHFKESEKV SDIMLQKLKS ENSBTAP00000019419/1-770 KRTSQPTSRI LSLLALMVEL LPHQDIINPD AEHFKENEKV SD-MPQKLKS ENSTTRP00000016425/1-746 KRTSQLTSKI RSLLALMVRL LMCQDITNPD ARHFKESEK- ---------- bmy_00861T0/1-603 KRTSQLTSKV CNLLALMVRL LMCQDITNPD AEHFKENEKI SDIMLQKLKS BACU018228/1-760 KRTSQLTSKI CNLLALMVRL LMCQDITNPD AEHFKENEKV SDIMLQKLKS 701 750 ENSP00000425493/1-839 LHLKKKTLDK ELLKHKDRIT TFRELIAKEK AFQDHAIKVI DCDSDEAKSI ENSBTAP00000019419/1-770 FHLKKKILDK ELLKHKDKIA AFRQLLANEK SCQHQVPGVT EFDSKEAKNV ENSTTRP00000016425/1-746 ---------- -LLKHKDRIT AFRELIANEK SFQDQVTEVT --DSNEAKNV bmy_00861T0/1-603 FHLKKKKLDK ELLKHKDRIT AFRELIANEK SFQDQDTEVT DFDSNEAKNV BACU018228/1-760 FHLKKKKLDK ELLKHKDRIT AFRELIANEK SFQDQDTEVT DFDSNEAKNV 751 800 ENSP00000425493/1-839 RDVPTLLGAK LDKYHSLNEE LDFLITKLGH LLESKENHCN RLIEENDKYQ ENSBTAP00000019419/1-770 RDVPVVLGAK LNQPHNLNEE LDFLIAKLEN LLETKEDHCN RLTEENDKYQ ENSTTRP00000016425/1-746 GEVPVLLGAK LDQYHSVNEE LDFLXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_00861T0/1-603 GDVPVLLGAK LDQYHSLNEE LDFLIAKLGN LLELKEDHCN RLIEENDKYR BACU018228/1-760 GDVPVLLGAK LDQYHNLNEE LDFLIAKLGN LLELKEDHCN RLIEENDKYQ 801 850 ENSP00000425493/1-839 RHLGNLIKKV TSYEEIIECA DQRLAISHSQ IAHLEERNKH LEDLIRKPRE ENSBTAP00000019419/1-770 RHLGNLINKV TSYEEIIKCA DQRLVISHSQ IAHLEERNKQ LEDLIRRSRE ENSTTRP00000016425/1-746 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXLEERNKH LEDLIRRPRE bmy_00861T0/1-603 RHLGNLINKV TSYEEIIECA DRRLMISNSQ IAQLRS---- ---------- BACU018228/1-760 RHLGNLINKV TSYEEIIECA DRRLMISNSQ IAHLEERNKH LEDLIRRPRE 851 900 ENSP00000425493/1-839 KARKPRSKSL ENHPKSMTMM ---PALFKEN RNDLD ENSBTAP00000019419/1-770 RVRKPRPRS- --HPKPLTVI ---DNHYKEC DVSM- ENSTTRP00000016425/1-746 STRKPRLRR- --HPKPVTVM ---PDILEGN RNDLD bmy_00861T0/1-603 ---------- --HPKSMTVV GHTDDNYKEC YIPM- BACU018228/1-760 RARKLR---- ---------- ---------- -----