KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:38 2014 Check: 00 .. Name: ENSTTRP00000006945/1-261 Len: 283 Check: 2558 Weight: 1.00 Name: ENSP00000183605/1-261 Len: 283 Check: 1539 Weight: 1.00 Name: ENSBTAP00000019421/1-261 Len: 283 Check: 1130 Weight: 1.00 Name: bmy_10307T0/1-193 Len: 283 Check: 9701 Weight: 1.00 Name: BACU019296/1-261 Len: 283 Check: 1454 Weight: 1.00 // 1 50 ENSTTRP00000006945/1-261 MSTTTCQVVG FLLSMLGLAG CITATVMDTW STQDLYDNPV TAVFQYEGLW ENSP00000183605/1-261 MSTTTCQVVA FLLSILGLAG CIAATGMDMW STQDLYDNPV TSVFQYEGLW ENSBTAP00000019421/1-261 MSTTRCQVVG FLLSILGLAG CIVATEMDMW STQDLYDNPV TAVFQYEGLW bmy_10307T0/1-193 ---------- ---------- ---------- ---------- ---------- BACU019296/1-261 MSTATCQVVG FLLSILGLAG CIAATVMDMW STQDLYDNPV TAVFQYEGLW 51 100 ENSTTRP00000006945/1-261 RSCVQQSSGF TQCRPYFTIL GLPXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000183605/1-261 RSCVRQSSGF TECRPYFTIL GLPAMLQAVR ALMIVGIVLG AIGLLVSIFA ENSBTAP00000019421/1-261 RSCVQQSSGF TECRPYLTIL GLPAMLQAVR ALMIVGIVLS VIGLLVAIFA bmy_10307T0/1-193 ---------- ---------- ----MLQAVR ALMIVGIVLS VIGLLVAIFA BACU019296/1-261 RSCVQQSSGF TQCRPYFTIL GLPAMLQAVR ALMIVGIVLS VIGLLVAIFA 101 150 ENSTTRP00000006945/1-261 XXXXXXXXXX XXXXXXXXXX XGIMFIISGL CAIAGVSVFA NMLVTNFWMS ENSP00000183605/1-261 LKCIRIGSME DSAKANMTLT SGIMFIVSGL CAIAGVSVFA NMLVTNFWMS ENSBTAP00000019421/1-261 LKCIRMGNMD DSAKAKMTLT SGIMFIIAGL CAIAGVSVFA NMLVTNFWMS bmy_10307T0/1-193 LKCIRIGNMD DSAKAKMTLT SGIMFIISGL CAIAGVSVFA NMLVTNFWMS BACU019296/1-261 LKCIRIGNMD DSAKAKMTLT SGIMFIISGL CAIAGVSVFA NMLVTNFWMS 151 200 ENSTTRP00000006945/1-261 TANMYTSMGG MVQTVQTXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000183605/1-261 TANMYTGMGG MVQTVQTRYT FGAALFVGWV AGGLTLIGGV MMCIACRGLA ENSBTAP00000019421/1-261 TASMFTSMGG MVQTVQTRYT FGAALFVGWV AGGLTLIGGV LMCIACRGLA bmy_10307T0/1-193 TANMYTSMGG MVQTVQTRYT FGAALFVGWV AGGLTLIGGV LMCIACRGLA BACU019296/1-261 TANMYTSMGG MVQTVQTRYT FGAALFVGWV AGGLTLIGGV LMCIACRGLA 201 250 ENSTTRP00000006945/1-261 XXXXXYKAVS YHASGHNVAY RPGGFKASTV FESNTKNKKI YDGGARTEDE ENSP00000183605/1-261 PEETNYKAVS YHASGHSVAY KPGGFKASTG FGSNTKNKKI YDGGARTEDE ENSBTAP00000019421/1-261 PEETNYKAVS YHASGHNVAY RPGGFKASSG FESNTRNKKI YDGGARTEDE bmy_10307T0/1-193 PEET------ ---------- KPGGFKASTG FESNTKTKKI YDGGARTEDE BACU019296/1-261 PEETNYKAVS YHASGHNVAY RPGGFKASTG FESNTKTKKI YDGGARTEDE 251 300 ENSTTRP00000006945/1-261 GQSHPSKYDY V--------- ---------- --- ENSP00000183605/1-261 VQSYPSKHDY V--------- ---------- --- ENSBTAP00000019421/1-261 GQSPPSKYDY V--------- ---------- --- bmy_10307T0/1-193 RQSHPSKYDY VWKLESLGFT CECGLNSYQS LRV BACU019296/1-261 GQSHPSKYDY V--------- ---------- ---