KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:38 2014 Check: 00 .. Name: ENSP00000460871/1-490 Len: 637 Check: 5655 Weight: 1.00 Name: ENSBTAP00000019422/1-482 Len: 637 Check: 6774 Weight: 1.00 Name: ENSTTRP00000011028/1-475 Len: 637 Check: 5526 Weight: 1.00 Name: bmy_06508T0/1-386 Len: 637 Check: 3756 Weight: 1.00 Name: BACU012954/1-594 Len: 637 Check: 8872 Weight: 1.00 // 1 50 ENSP00000460871/1-490 MEDSASASLS SAAATGTSTS TPAAPTARKQ LDKEQVRKAV DALLTHCKSR ENSBTAP00000019422/1-482 MEASASNPPS TSPE--TSAS TPETPPGPEQ LDEEQVKKAV EALLAHSRSR ENSTTRP00000011028/1-475 MEASASTPPS TSTA--TSAS TPATPAGLEQ LDEEQIKKAV EALLAHSRSR bmy_06508T0/1-386 MEASASTPPS TSTA--TSAS TPATPVGLEQ LDEEQIKKAV EALLAHSRSR BACU012954/1-594 MEASASTPLS TSAA--TSAS TPATPVGLEQ LDEEQIKKAV EALLAHSRSR 51 100 ENSP00000460871/1-490 KNNYGLLLNE NESLFLMVVL WKIPSKELRV RLTLPHSIRS DSEDICLFTK ENSBTAP00000019422/1-482 KNANGLLLNE NENFFLMVVL WKIPSKELRV RLSLPHGIRS DLADVCLFTK ENSTTRP00000011028/1-475 KNANGLLLNE NENFFLMVVL WKIPSKELRV RLSLPHGIRS DLADICLFTK bmy_06508T0/1-386 KNANGLLLNE NENFFLMVVL WKIPSKELRV RL-------- ---------- BACU012954/1-594 KNANGLLLNE NENFFLMVVL WKIPSKELRV RLSLPHGIRS DLADICLFTK 101 150 ENSP00000460871/1-490 DEPNSTPEKT EQFYRKLLNK HGIKTVSQII SLQTLKKEYK SYEAKLRLLS ENSBTAP00000019422/1-482 DEPNLSSEQT ERYYKKLLNN HGIKTISQII PFRTLKKEYK AYEAKLRLLG ENSTTRP00000011028/1-475 DEPNLTPEQT ERFYKKLLNK HGVKIISQII PLRTLKKEYK AYEAKLRLLG bmy_06508T0/1-386 ---------- ---------- ---------- ---------- ---------- BACU012954/1-594 DEPNLTPEQT ERFYKKLLNK HGVKTISQII PLRTLKKEYK AYEAKLRLLG 151 200 ENSP00000460871/1-490 SFDFFLTDAR IRRLLPSLIG RHFYQRKKVP VSVNLLSKNL SREINDCIGG ENSBTAP00000019422/1-482 SFDFFITDAR IRRLLPSHLG RHFYNRKKVP VSVNLQSKTL SREINDCIGG ENSTTRP00000011028/1-475 SFDFFITDAR IRRLLPSHLG RHFYNRKKVP VPVNLQAKNL SREISDCVGG bmy_06508T0/1-386 ---------- ---------- --------VP VPVNLQAKNL SREISDCVGG BACU012954/1-594 SFDFFITDAR IRRLLPSHLG RHFYNRKKVP VPVNLQAKNL SREISDCIGG 201 250 ENSP00000460871/1-490 TVLNISKSGS CSAIRIGHVG MQIEHIIENI VAVTKGLSEK LPEKWESVKL ENSBTAP00000019422/1-482 TVLNISKSGS CSTIRIGHTG MPIQHIVENV VAVAKSLSQK LPEKWESVKL ENSTTRP00000011028/1-475 TVLNISKSGS CSTIRIGHTG MQVQHIVENV VAVTRRLSQK LPEKWESVKL bmy_06508T0/1-386 TVLNISKSGS CSTIRIGHTG MQVQHIVENV VAVTKRLSQK LPEKWESVKL BACU012954/1-594 TVLNISKSGS CSTIRIGHTG MQVQHIVENV VAVTKRLSQK LPEKWESVKL 251 300 ENSP00000460871/1-490 LFVKTEKSAA LPIFSSFVSN WDEATKRSLL NKKKKEARRK RRERN-FEKQ ENSBTAP00000019422/1-482 LFVKTERSVS LPVFSSFVSS QGEAKGLRTR DLLKKVSKKS RKKTERALKR ENSTTRP00000011028/1-475 LYVKTERSVS LPVFSSFVSS RGEARGLRTQ SQKKKVSKKS QKERS-LKRQ bmy_06508T0/1-386 LYVKTERSVS LPVFSSFVSS RGEARGLRTQ SQKKKVAKKS QKKKERLKRQ BACU012954/1-594 LYVRTERSVS LPVFSSFVSS RGEARGLRTQ SQKKKVAKKS QKKKERLKRQ 301 350 ENSP00000460871/1-490 KERKKKR--- QQARKTASVL SKDDVAPESG DTTVKKPESK KEQTPEHGKK ENSBTAP00000019422/1-482 QQEKKEKKLL KQAAKAKPAP TTDAVAPKTG GVPTQDPAPQ EET------- ENSTTRP00000011028/1-475 QEKKGNKKLM KQAGKAAPAP TTDAPAPKTG GAPAQDPGPQ KET------- bmy_06508T0/1-386 QEKKGDKKLM KQAGKAAPAP ITDAPAPKTG GASAQDPGPQ KET------- BACU012954/1-594 QEKKGDKKLM KQAGKAAPAP TTDAPAPKTG GAPAQGPGPQ KET------- 351 400 ENSP00000460871/1-490 KRGRGKAQVK ATNESEDEIP QLVPIGKKTP ANEKVEIQKH ATGKKSPAKS ENSBTAP00000019422/1-482 --GGVSALPK AQDDSEDEIP LLVPL-KETP AAGSTKIQKA AIGKKSPKKS ENSTTRP00000011028/1-475 --GGVSTPAK AQDKSEDEIP LLVPV-KETP AARSIETQKG AAGKKSPKKS bmy_06508T0/1-386 --GGVSAPPR AQDESEDEIP LLVPV-KETP AARSVKTQKD AAGKKSPKKS BACU012954/1-594 --GG------ ---------- ---------- ------TQKD AAGKKSPKKS 401 450 ENSP00000460871/1-490 PNPSTPRGKK RKALPASETP KAAESETPGK SPEKKPKIKE EAVKEKSPSL ENSBTAP00000019422/1-482 PGPNTARAKK RKASPALETP IAAEPKTPGK GPGKKARVKE EVEKERNSSL ENSTTRP00000011028/1-475 PGPNTPHGKK RKASPALETP TALES-TPGK GPG-RTRIKE ELEKERSSSL bmy_06508T0/1-386 RGPNTPHGKK RKASPALETP AAAEPKTPGK GPGKKARIKE ELEKERTSSL BACU012954/1-594 RGPNTPHGKK RKASPALETP AAAEPKTPGK GPGKKARIKE ELEKERTSSL 451 500 ENSP00000460871/1-490 GKKDARQTPK KPEAKFFTTP SKSVRKASHT PKKWPKKPKV ---------- ENSBTAP00000019422/1-482 GKKDPRQTPK KPEAKFFTTA SSSVKKAPRT LTQRPKKPKV ---------- ENSTTRP00000011028/1-475 GKK--RQTPK K-QSQFFTTA S-SAKKXPRT PKQWPKNPKV ---------- bmy_06508T0/1-386 GKKDPRQTPK KPEAKFFTTA SKSAKKAPRT PKQWPKKPKV ---------- BACU012954/1-594 GKKDPRQTPK KPEAKFFTTA SKSAKKTPRT PKQWPKKPKI RLIMILATQA 501 550 ENSP00000460871/1-490 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019422/1-482 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011028/1-475 ---------- ---------- ---------- ---------- ---------- bmy_06508T0/1-386 ---------- ---------- ---------- ---------- ---------- BACU012954/1-594 RSQWTWFQRI MQEFHKRICL FYTGLIILLL EIAVVAFFAD HLPFSLSMTI 551 600 ENSP00000460871/1-490 ---------- ---------- ---------P QST------- ---------- ENSBTAP00000019422/1-482 ---------- ---------- ---------P QST------- ---------- ENSTTRP00000011028/1-475 ---------- ---------- ---------P QST------- ---------- bmy_06508T0/1-386 ---------- ---------- ---------P QST------- ---------- BACU012954/1-594 IASGIVFILI SGGMVLYGLC RNSEYAPLRP EESTMIVTGI VFFFLTGLMY 601 650 ENSP00000460871/1-490 ---------- ---------- ---------- ------- ENSBTAP00000019422/1-482 ---------- ---------- ---------- ------- ENSTTRP00000011028/1-475 ---------- ---------- ---------- ------- bmy_06508T0/1-386 ---------- ---------- ---------- ------- BACU012954/1-594 LHEANKISAF IQEKFSRSRS ARDPCEALEM EEPTVIT