KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:39 2014 Check: 00 .. Name: ENSP00000341944/1-880 Len: 968 Check: 8956 Weight: 1.00 Name: ENSBTAP00000019433/1-857 Len: 968 Check: 4994 Weight: 1.00 Name: ENSTTRP00000002027/1-857 Len: 968 Check: 5075 Weight: 1.00 Name: bmy_15305T0/1-733 Len: 968 Check: 5451 Weight: 1.00 Name: BACU008756/1-890 Len: 968 Check: 6708 Weight: 1.00 // 1 50 ENSP00000341944/1-880 MKNLYFRVIT IVIGLYFTGI MTNASRKSNI LFNSECQWNE YILTNCSFTG ENSBTAP00000019433/1-857 MKNLCFRVIT MVIGLYFTGT MTNPSRKSSI LFNSKYQWNG YLTTNCSFAG ENSTTRP00000002027/1-857 MKNLRLRVVT MVIGLYFTDT MTNPSRKS-I LFNSECQWNG YLLTNCSFAG bmy_15305T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU008756/1-890 ---------- ---------- MTNPSRKSRI LFNSECQWNG YLLTNCSFAG 51 100 ENSP00000341944/1-880 KCDIPVDISQ TAATVDVSFN FFRVLLQSHT KKEEWKIKHL DLSNNLISKI ENSBTAP00000019433/1-857 KHEIPMDIPQ MAPTVDDSSN FLRVLLQTHM KKEEWNIKHL DLSNNLISKI ENSTTRP00000002027/1-857 KHETPVDISQ MAAIVDVSSS FFRVLLQTHM KKEEWNIRHL DLSNNLISKI bmy_15305T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU008756/1-890 KHEIPVDISQ IAATVDVSSS FFRVLLQTHM KKEEWNIKHL DLSNNLISKI 101 150 ENSP00000341944/1-880 TLSPFAYLHA LEVLNLSNNA IHSLSLDLLS PKSSWVKRHR SSFRNRFPLL ENSBTAP00000019433/1-857 TLSSLEHFHA LETLNLSNNA IHSVLLDLPS FKSSWVKRHR GSLRNRLPFL ENSTTRP00000002027/1-857 TLSSLAHFRA LEILNLSNNA IRSVSLDLLS FKSLWVKRQR GSLRNGLPFL bmy_15305T0/1-733 ---------M MSIF------ ---------- ---------- GTRRSNI--- BACU008756/1-890 TLSSLAHFHA LEILNLSNNA IHSVSLDLLS FKSLWVKRHR GSLRNGLPFL 151 200 ENSP00000341944/1-880 KVLILQRNKL SDTPKGLWKL KSLQSLDLSF NGILQIGWSD FHNCLQLENL ENSBTAP00000019433/1-857 KLLTLQRNKL SNIPKGLWKL KSLQSLDLSF NRISQIGLSD FHNCLQLENL ENSTTRP00000002027/1-857 KLLILQRNKL SDIPKGLWKL KSLQSLDLSF NGITQIGLSD FHNCLQLESL bmy_15305T0/1-733 ---------- ---------- ---------- ---------- ---------- BACU008756/1-890 KLLILQRNKL SDIPKGLWKL KSLQSLDLSF NGITQIGLSD FHNCLQLENL 201 250 ENSP00000341944/1-880 CLKSNKIFKI PPQAFKDLKK LQVIDLSNNA LITILPMMII ALEFPHLVVD ENSBTAP00000019433/1-857 HLKSNRIFRI HPEAFKDLKK LQMVDLSNNG LTAILPVVIM ALELPHLEAD ENSTTRP00000002027/1-857 HLKSNKIFRI HPEAFKDLKK LQVVDLSNNA LTAILPMMIV ALELPXXXXX bmy_15305T0/1-733 ---------- ---------E VDVVDLSSNA LTAILPMMMV ALELPHLDAD BACU008756/1-890 HLKSNKIFRI HPEAFKDLKK LQVVDLSNNA LTAILPMMMV ALELPHLEAD 251 300 ENSP00000341944/1-880 LADNNWQCDD SVAVFQNFIS ESWRKKWNVI CNRSI----- ---------- ENSBTAP00000019433/1-857 LADNPWQCDY SLAVFQNVIS ESWRKRWNAI CNESI----- ---------- ENSTTRP00000002027/1-857 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- ---------- bmy_15305T0/1-733 LAGNQWQCDY GVAVFQNVIS ESWRRKWNAI CNKSIARRGL RTHRCFLNHW BACU008756/1-890 LAGNQWQCDY GMAVFQNVIS ESWRRKWNAI CNKSI----- ---------- 301 350 ENSP00000341944/1-880 ---------- ------GSEE ANGGTPQSRI SRETRLPPIH LHRMKSL-IR ENSBTAP00000019433/1-857 ---------- ------GKED AHWWTPTSRM SRETHLPHAD LKHMNTL-IR ENSTTRP00000002027/1-857 ---------- ------XKEE AYWWTPTRRV SRETHLPRTN LNHTRSL-AT bmy_15305T0/1-733 NLIPVSTQRV LLPPLSGKEE AYWWTPTRRA SRETHLPRTN LNHTKSLTTT BACU008756/1-890 ---------- ------GKEE AYWWTPTRRA SRETHLPRTN LNRTKSLTAT 351 400 ENSP00000341944/1-880 SKAERPQGGR HTGISTLGKK AKAGSGLRKK QRRLPRSVRS TRDVQAAGKK ENSBTAP00000019433/1-857 SKAERAQEVR ---FSML-EK DTAGSDAGDR PRELPKRVRR AEDVRAAGRK ENSTTRP00000002027/1-857 STAERPWEVR ---FSTLRKK DPAGSDTSDR ERRLPGRVRS TGDVQAAGRR bmy_15305T0/1-733 SKAERPWEVR ---FSTLRKK DPAGSDTSEG QRRLPRRVRS AGDVQAAGRR BACU008756/1-890 SKAERPWEVR ---FSTLRKK DPAGSDTSEG QRRLPRRVRS AGDVQAAGRR 401 450 ENSP00000341944/1-880 EDAPQDLALA VCLSVFITFL VAFSLGAFTR PYVDRLWQKK CQSKSPG--L ENSBTAP00000019433/1-857 ADSSQDLVLA VCLSVFITFF VAFCLGAFAR PYVDRLWQQR CREKSPGSAS ENSTTRP00000002027/1-857 EDASQDLVLA VCLSVSITFF VAFCLGAFAR PYVDRLWQQR CQKKSPG--S bmy_15305T0/1-733 XDASQDLALA VCLSVFITFF VAFCLGAFAR PYVDRLWQQR CQKKSPG--S BACU008756/1-890 EDASQDLALA VCLSVFITFF VAFCLGAFAR PYVDRLWQQR CRKKSPG--S 451 500 ENSP00000341944/1-880 DNAYSNEGFY DDMEAAGHTP HPETHLRQVF PHLSLYENQT PFWVTQPHPH ENSBTAP00000019433/1-857 GNEYSNQAFY DEIEGAVNLQ QPRMDLPQTF HHLNLYENQA --------PR ENSTTRP00000002027/1-857 GNVYSNQGFY DEIKAVGNME RPRMDLRQTF HDPNLCENQA --------PP bmy_15305T0/1-733 RNVYSNQGFY DEIVAVGNMQ QPRMDLRQAF YGPNVCENQA --------PH BACU008756/1-890 GNVYSNQGFY DEIVAVGNTQ QPRMDLRQTF HGPNLCENQA --------PH 501 550 ENSP00000341944/1-880 ATVIPDRTLG RSRKDPGSSQ SPGQCGDNTG AGSGND---- --GAVYSILQ ENSBTAP00000019433/1-857 TAVVPARTVA PSRREAGGRQ DREQRRVSTG AGSGKDTVPP NHSAARRVLY ENSTTRP00000002027/1-857 AAVTPARTLA PSRKEAGGGQ GGERCGDHTG AGSGKD---- --GAARPVLR bmy_15305T0/1-733 AAVTPARTLA PSSKEAGGRQ GGERCGDHTG AGSGKDNALP NHGAARPVLR BACU008756/1-890 AAVTPARTRA PSSKEAGGRQ GGERCGDHTG AGSGKDNALP NHGAARPVLR 551 600 ENSP00000341944/1-880 RHPHAGNREL MSAAQDHIHR NDILGEWTYE TVAQEEPLSA HSVGVSSVAG ENSBTAP00000019433/1-857 GPPNAHDTQL TSAGWDHIYR ND-PGEGNYD TVARQVSLSE RSVGIPAVAA ENSTTRP00000002027/1-857 GWPNADDTQL MPAGQDCIYR YDIPGEVNYD TVAGEASLGE RSVGIPAVAA bmy_15305T0/1-733 GRPNADDTQL MPAGQDCIYR YDIPGEVNYD TVAGEDSLCE HSVGIPAVAA BACU008756/1-890 GRPNADDTQL MPAGQDCSYR YDIPGEVNYD TVAREDSLGE RSMGIPAVAA 601 650 ENSP00000341944/1-880 TSHAVSGSSR YDSNELDPSL SGEITASLCK MLTHAEAQRT GDSKERGGTE ENSBTAP00000019433/1-857 GIQTSPSSVR KDSDELGPPC PRETTMPLSQ RPARTHTPST GEERG-GVPP ENSTTRP00000002027/1-857 RLQTSPGSIC EDSNELGPPI PREMTTPLSQ MVARTKALRT GEKEGRGGSP bmy_15305T0/1-733 RLQTSPGSIR KDSNELGPPL PRELTTPLSQ MVARTKALRT GEKEGRGVTP BACU008756/1-890 RLQTSPGSIH KDSNELGPPL PREMATPVSQ MVARAKALRT GEKEGRGGTP 651 700 ENSP00000341944/1-880 QSLWDSQMEF SKERQVSSSI DLLSIQQPRL SGARAEEALS AHYSEVPYGD ENSBTAP00000019433/1-857 H----FPSEF SKE------- NGQSAQQQRL QGASAEGQPP AHYEAATLSD ENSTTRP00000002027/1-857 H----CPSEF SKE------- NVLSAQQQRL EGAGDEEEPL AHYGAATLND bmy_15305T0/1-733 H----FPLEF SK-------- NVLSAQQQRL EGAGDEGEPL AHYGAATLGD BACU008756/1-890 H----FPSEF SKE------- NVLSAQQQRL EGAGDEEEPL AHCGAATLSD 701 750 ENSP00000341944/1-880 PR--DTGPSV FPPRWDSGLD VTPANKEPVQ KSTPSDTCCE LESDCDSDEG ENSBTAP00000019433/1-857 LG--DPSPPG GPPGCCGDLP VTPAYQEPAQ KHTP-DAQYE VDSDSDSEEG ENSTTRP00000002027/1-857 PGATDPSPPV FAPGWGHDLH VTPASKELAQ KDTP-DAQCE L--DTDSDEG bmy_15305T0/1-733 PGATDPSPPV FAPGWGHDLH VTRANKELAQ KDTP-DAQYE L--DTDSDEG BACU008756/1-890 PGATDPSPPV CAPGWGHDLH VTPANKELAQ KDTP-DAQYE L--DTDSDEG 751 800 ENSP00000341944/1-880 SLFTLSSISS ESARSKTEEA VPDE------ ESLQDESSGA SKDNVTAVDS ENSBTAP00000019433/1-857 SLFTLSSTSS ENWRNVAEEE AGGEQSWRAG EPPGDQVSCE RRDSVRPLES ENSTTRP00000002027/1-857 SLFTLSSTSS EDWRSVADAE AHGE------ EPLGDEDSGE RRDNVVSLES bmy_15305T0/1-733 SLFTLSSTSS EDWRNVAEAE ARGEESCRAN EPRGDEDSGE RRDNVVSLES BACU008756/1-890 SLFTLSSTSS EDWRNVAEAE ARGEESCRAN EPRGDEDSGE RRDNVVSLES 801 850 ENSP00000341944/1-880 LEENVTFQTI PGKCKNQEDP FEKPLISAPD SGMYKTHLEN ASDTDRSEGL ENSBTAP00000019433/1-857 PKDNIAFQKT LRKCENQEDH FGKTVTSDPD SHLCQTHLES ASNTNNYEDP ENSTTRP00000002027/1-857 LEDSIAFQKI LGKCENQEHH SGKTLISDPD YGLDATHPES GSNTNIFEDP bmy_15305T0/1-733 LEDSIAFQKI LGKCENQEAR SGKTLISDPD YGLYEAHPES GSNTNKFEDP BACU008756/1-890 LEDSIAFQKI LGKCENQEDR SGKTLISDPD YGLYEAHPES RSNTNKFEDP 851 900 ENSP00000341944/1-880 SPWPRSPGNS PLGDEFPGMF TYDYDTALQS KAAEWHCSLR DLEFSNVDVL ENSBTAP00000019433/1-857 L--PRSSGSS SSSEEVPSMS IYNYISALQP SAVEWQYSLR DLEFANVDAL ENSTTRP00000002027/1-857 LTLPRSPGNS PCSDEIPGMS IDDYVTALQS KAAEWQCSLR DLEFSNVDVL bmy_15305T0/1-733 LTSPRSLGNS PCSDEIPGMS IDDCVTALQS KAAEWQCSLR DLEFSVVDVL BACU008756/1-890 LTLPRSLGNS PCGDEIPGMS IDDCVTALQS KAAEWQCSLR DLEFSVVDVL 901 950 ENSP00000341944/1-880 QQTPPCSAEV PSDPDKAAFH ERDSDILK-- ---------- ---------- ENSBTAP00000019433/1-857 PQTPPCSAKV PSDPDKCLS- ---------- ---------- ---------- ENSTTRP00000002027/1-857 PQTPTCSAEV PSDPDESACG EGDADICKY- ---------- ---------- bmy_15305T0/1-733 PQTPTRSAEV PSDPDESACG EGDADICKYE PYVQGVDTAQ SNIPSKIAVG BACU008756/1-890 PQTPTRSAEV PSDPDESVCG EGDADIFKYE PYVQGVDTAQ SHIPSKMAVG 951 1000 ENSP00000341944/1-880 ---------- -------- ENSBTAP00000019433/1-857 ---------- -------- ENSTTRP00000002027/1-857 ---------- -------- bmy_15305T0/1-733 KNLRPSRQDS EEDNMNGH BACU008756/1-890 KNLRPSRQDS EEDNMNGH