KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:48 2014 Check: 00 .. Name: ENSP00000297792/1-590 Len: 822 Check: 268 Weight: 1.00 Name: ENSBTAP00000019452/1-820 Len: 822 Check: 509 Weight: 1.00 Name: ENSTTRP00000006759/1-795 Len: 822 Check: 4434 Weight: 1.00 Name: bmy_08415T0/1-585 Len: 822 Check: 302 Weight: 1.00 Name: BACU017615/1-820 Len: 822 Check: 8616 Weight: 1.00 // 1 50 ENSP00000297792/1-590 MATPRGRTKK KASFDH-SPD SLPLRSSGRQ AKKKATETTD EDEDGGSEKK ENSBTAP00000019452/1-820 MATSRGRTKK KASFDH-SPD SLPLRSSGRQ AKKKATETTD EDEDGGSEKK ENSTTRP00000006759/1-795 MATPRGRTKK KAPFDHLXXX XXXXXXXXXX VKKKATETAD EDEDGGSEKK bmy_08415T0/1-585 ---------- ---------- ---------- ---------- ---------- BACU017615/1-820 MATPRGRTKK KASFDH-SPD SLPLRSSGRQ AKKKATETTD EDEDGGSEKK 51 100 ENSP00000297792/1-590 YRKCEKAGCT ATCPVCFASA SERCAKNGYT SRWYHLSCGE HFCNECFDHY ENSBTAP00000019452/1-820 YRKCEKAGCT ATCPVCFAST SERCAKNGYT SRWYHLSCGE HFCNECFDHY ENSTTRP00000006759/1-795 YRKCEKAGCT AACPVCFASA SERCAKNGYT SRWYHLSCGE HFCNECFDHY bmy_08415T0/1-585 ---------- ---------- ---------- ---------- ---------- BACU017615/1-820 YRKCEKAGCT AACPVCFASA SERCAKNGYT SRWYHLSCGE HFCNECFDHY 101 150 ENSP00000297792/1-590 YRSHKDGYDK YTTWKKIWTS NGKTEPSPKA FMADQQLPYW VQCTKPECRK ENSBTAP00000019452/1-820 YRSHKDGYDK YTTWKKIWTS NGKTEPSPKA FMADQQLPYW VQCTKPECRK ENSTTRP00000006759/1-795 YRSHKDGYDK YTTWKKIWTS NGKTEPSPKA FMADQQLPYW VQCTKPECRK bmy_08415T0/1-585 ---------- ---------- ---------- -MADQQLPYW VQCTKPECRK BACU017615/1-820 YRSHKDGYDK YTTWKKIWTS NGKTEPSPKA FMADQQLPYW VQCTKPECRK 151 200 ENSP00000297792/1-590 WRQLTKEIQL TPQIAKTYRC GMKPNTAIKP ETSDHCSLPE DL-------- ENSBTAP00000019452/1-820 WRQLTKEIQL TPQIAKTYRC GMKPNTAVKP ETSDHCSLPE DLRVSEVPNH ENSTTRP00000006759/1-795 WRQLTKEIQL TPQIARTYRC GMKPNTAVKP ETSDHCSLPE DLRVSEVSNH bmy_08415T0/1-585 WRQLTKEIQL TPQIAKTYRC GMKPNTAVK- ---------- --RVSEVSNH BACU017615/1-820 WRQLTKEIQL TPQIAKTYRC GMKPNTAVKP ETSDHCSLPE DLRVSEVSNH 201 250 ENSP00000297792/1-590 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019452/1-820 WWYSMLILPP LLKDSVAAPL LSAYYPDCVG MSPSCTSTHR VTSDASPGKL ENSTTRP00000006759/1-795 WWYSMLILPP LLKDSVAAPL LSAYYPDCVG MSPSCTSTHR TASDASPGKL bmy_08415T0/1-585 WWYSMLILPP LLKDSVAAPL LSAYYPDCVG MSPSCTSTHR AASDTSPGKL BACU017615/1-820 WWYSMLILPP LLKDSVAAPL LSAYYPDCVG MSPSCTSTHR AASDTSPGKL 251 300 ENSP00000297792/1-590 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019452/1-820 EHPKAVPSVL VPGMNRYFQP FYQPNECGKA LCVRPDVMEL DELYEFPEYS ENSTTRP00000006759/1-795 EHSKAVPCVL VPGMNRYFQP FYQPNECGKA LCVRPDVMEL DELYEFPEYS bmy_08415T0/1-585 EHSKAVPSVL VPGMNRYFQP FYQPNECGKA LCVRPDVMEL DELYEFPEYS BACU017615/1-820 EHSKAVPSVL VPGMNRYFQP FYQPNECGKA LCVRPDVMEL DELYEFPEYS 301 350 ENSP00000297792/1-590 ---------- ---------- --EALTPQKC IPHIIVRGLV RIRCVQEVER ENSBTAP00000019452/1-820 RDPTMYLALR NLVLALWFTN CKEALTPQKC IPHIIVRGLV RIRCVQEVER ENSTTRP00000006759/1-795 RDPTMYLALR NLILALWYTN CKEALTPQKC IPHIIVRGLV RIRCVQEVER bmy_08415T0/1-585 RDPTMYLALR NLILALWYTN CKEALTPQKC IPHIIVRGLV RIRCVQEVER BACU017615/1-820 RDPTMYLALR NLILALWYTN CKEALTPQKC IPHIIVRGLV RIRCVQEVER 351 400 ENSP00000297792/1-590 ILYFMTRKGL INTGVLSVGA DQYLLPKDYH NKSVIIIGAG PAGLAAARQL ENSBTAP00000019452/1-820 ILYFMTRKGL INTGVLSVGP DQHLLPKDYH NKSVIIIGAG PAGLAAARQL ENSTTRP00000006759/1-795 ILYFMTRKGL INTGVLTVGT DQHLLPKDYH NKSVIIIGAG PAGLAAARQL bmy_08415T0/1-585 ILYFMTRKGL INTGVLTVGT DQHLLPKDYH NKSVIIIGAG PAGLAAARQL BACU017615/1-820 ILYFMTRKGL INTGVLTVGT DQHLLPKDYH NKSVIIIGAG PAGLAAARQL 401 450 ENSP00000297792/1-590 HNFGIKVTVL EAKDRIGGRV WDDKSFKGVT VGRGAQIVNG CINNPVALMC ENSBTAP00000019452/1-820 HNFGIKVTVL EAKDRIGGRV WDDKSFTGVT VGRGAQIVNG CVNNPVALMC ENSTTRP00000006759/1-795 HNFGIKVTVL EAKDRIGGRV WDDKSFTGVT VGRGAQIVNG CINNPVALMC bmy_08415T0/1-585 YNFGIKVTVL EAKDRIGGRV WDDKSFTGVT VGRGAQIVNG CINNPVALMC BACU017615/1-820 HNFGIKVTVL EAKDRIGGRV WDDKSFTGVT VGRGAQIVNG CINNPVALMC 451 500 ENSP00000297792/1-590 E--------- ---------- ---------- ---------- ---------- ENSBTAP00000019452/1-820 EQLGISMHKF GERCDLIQEG GRITDPTIDK RMDFHFNALL DVVSEWRKDK ENSTTRP00000006759/1-795 EQLGISMHKF GERCDLIQEG GRITDPTIDK RMDFHFNALL DVVSEWRKDK bmy_08415T0/1-585 EQLGISMHKF GERCDLIQEG GRITDPTIDK RMDFHFNALL DVVSEWRKDK BACU017615/1-820 EQLGISMHKF GERCDLIQEG GRITDPTIDK RMDFHFNALL DVVSEWRKDK 501 550 ENSP00000297792/1-590 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019452/1-820 TQLQDVPLGE KIEEIYKAFI KESGIQFSEL EEQVLQFHLS NLEYACGSNL ENSTTRP00000006759/1-795 TQLQDVPLGE KIEEIYKAFI NESGIQFSEL EEEVLQFHLS NLEYACGSSL bmy_08415T0/1-585 TQLQDVPLGE KIEEIYKAFI KESGIQFSEL EEQVLQFHLS NLEYACGNNL BACU017615/1-820 TQLQDVPLGE KIEEIYKAFI KESGIQFSEL EEQVLQFHLS NLEYACGNNL 551 600 ENSP00000297792/1-590 -QVSARSWDH NEFFAQFAGD HTLLTPGYSV IIEKLAEGLD IQLKSP-VQC ENSBTAP00000019452/1-820 HQVSARSWDH NEFFAQFAGD HTLLTPGYSV ILEKLAEGLD IRLRSP-VQS ENSTTRP00000006759/1-795 HQVSARSWDH NEFFAQFAGD HTLLTLGYSV ILEKLTEGLD IRLRSPQVKS bmy_08415T0/1-585 HQVSARSWDH NEFFAQFAGD HTLLTPGYSV ILEKLAEGLD IRLRSP---- BACU017615/1-820 HQVSARSWDH NEFFAQFAGD HTLLTPGYSV ILEKLAEGLD IRLRSP-VQS 601 650 ENSP00000297792/1-590 IDYSGDEVQV TTTDGTGYSA QKVLVTVPLA LLQKGAIQFN PPLSEKKMKA ENSBTAP00000019452/1-820 IDYSGDEVQV TTTSGAVCTA QKVLVTVPLA LLQKGAIQFN PPLSDKKMKA ENSTTRP00000006759/1-795 IDYSGDEVQV TTTDGTECTA QKVLVTVPLA LLQKGSLQFN PPLSDKKMKA bmy_08415T0/1-585 ---------- ---------- --VLVTVPLA LLQKGSLQFN PPLSDKKMKA BACU017615/1-820 IDYSGDEVQV TTTDGTECTA QKVLVTVPLA LLQKGSLQFN PPLSDKKMKA 651 700 ENSP00000297792/1-590 INSLGAGIIE KIALQFPYRF WDSKVQGADF FGHVPPSASK RGLFAVFYDM ENSBTAP00000019452/1-820 INSLGAGIIE KIALQFPYRF WDSKVQGADF FGHVPPSASK RGLFAVFYDM ENSTTRP00000006759/1-795 INSLGAGIIE KIALQFPYRF WDSKVQGADF FGHVPPSASK RGLFAVFYDM bmy_08415T0/1-585 INSLGAGIIE KIALQFPYRF WDSKVQGADF FGHVPPSASK RGLFAVFYDM BACU017615/1-820 INSLGAGIIE KIALQFPYRF WDSKVQGADF FGHVPPSASK RGLFAVFYDM 701 750 ENSP00000297792/1-590 DPQKKHSVLM SVIAGEAVAS VRTLDDKQVL QQCMATLREL FKEQEVPDPT ENSBTAP00000019452/1-820 DPQKQHSVLM SVIAGEAVAA VRSLEDKQVL QQCMATLREL FKEQEVPDPT ENSTTRP00000006759/1-795 DPQ------- ---------- ---------- QHCRAIILQK MLKKEVPDPT bmy_08415T0/1-585 DPQKQHSVLM SVIAGEAVAA VRSLEDKQ-- ---------- ---------- BACU017615/1-820 DPQKQHSVLM SVIAGEAVAA VRNLEDKQVL QQCMATLREL FKEQEVPDPT 751 800 ENSP00000297792/1-590 KYFVTRWSTD PWIQMAYSFV KTGGSGEAYD IIAEDIQGTV FFAGEATNRH ENSBTAP00000019452/1-820 KYFVTRWSTD PWIQMAYSFV KTGGSGEAYD ILAEEIQGTV FFAGEATNRH ENSTTRP00000006759/1-795 KYFVTRWSTD PWIQMAYSFV KTGGSGEAYD ILAEEIQGTI FFAGEATNRH bmy_08415T0/1-585 ---------- ---------- ---------- ---------- -----ATNRH BACU017615/1-820 KYFVTRWSTD PWIQMAYSFV KTGGSGEAYD ILAEEIQGTI FFAGEATNRH 801 850 ENSP00000297792/1-590 FPQTVTGAYL SGVREASKIA AF ENSBTAP00000019452/1-820 FPQTVTGAYL SGVREASKIA AF ENSTTRP00000006759/1-795 FPQTVTGAYL SGVREASKIA AF bmy_08415T0/1-585 FPQTVTGAYL SGVREASKIA AF BACU017615/1-820 FPQTVTGAYL SGVREASKIA AF