KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:49 2014 Check: 00 .. Name: ENSTTRP00000006068/1-586 Len: 671 Check: 3427 Weight: 1.00 Name: ENSP00000347206/1-621 Len: 671 Check: 2562 Weight: 1.00 Name: ENSBTAP00000019453/1-568 Len: 671 Check: 9079 Weight: 1.00 Name: bmy_07580T0/1-482 Len: 671 Check: 9234 Weight: 1.00 Name: BACU001465/1-585 Len: 671 Check: 5894 Weight: 1.00 // 1 50 ENSTTRP00000006068/1-586 MGLLSDPVRR RALARLVLRL NAP------- ---------- ---------- ENSP00000347206/1-621 MGLLSDPVRR RALARLVLRL NAPLCVLSYV AGIAWFLALV FPPLTQRTYM ENSBTAP00000019453/1-568 ---------- ---------- ---------- ---------- ---------M bmy_07580T0/1-482 ---------- ---------- ---------- ---------- ---------M BACU001465/1-585 MGLLSDPVRR RALARLVLRL NAPLCVLSYV AGIAWFLALA FPPLTQRTYM 51 100 ENSTTRP00000006068/1-586 --------LA EGPPACQGSA RAAARDPAAP CXXXXXXXXX XXXXXXXXXX ENSP00000347206/1-621 SENAMGSTMV EEQFAGGDRA RAFARDFAAH RKKSGALPVA WLERTMRSVG ENSBTAP00000019453/1-568 SENAMGSTMV EEQFAGGDRA RSLARDFAAH RRKSGALPVA WLERTMRSVG bmy_07580T0/1-482 SENAMGSTMV EEQFAGGDRA RSFARDFAAH RRKSGALPVA WLERTMRSVG BACU001465/1-585 SENAMGSTMV EEQFAGGDRA RSFARDFAAH RRKSGALPVA WLERTMRSVG 101 150 ENSTTRP00000006068/1-586 XXXXXXXXXX XXXXXXXXXX XX---XXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000347206/1-621 LEVYTQSFSR KLPFPDETHE RY---MVSGT NVYGILRAPR AASTESLVLT ENSBTAP00000019453/1-568 LEVYTQSFSR KLPFPDETHE RY---MVSGI NVYGILRAPR AASTESLVLT bmy_07580T0/1-482 LEVYTQSFSR KLPFPDETHE RY---MVSGI NVYGILRAPR AASTESLVLT BACU001465/1-585 LEVYTQSFSR KLPFPDETLP QYRMQMVSGI NVYGILRAPR AASTESLVLT 151 200 ENSTTRP00000006068/1-586 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX KDIIILVTEH DILSSEAWLE ENSP00000347206/1-621 VPCGSDSTNS QAVGLLLALA AHFRGQIYWA KDIVFLVTEH DLLGTEAWLE ENSBTAP00000019453/1-568 VPCGPDSTNS QAVGLMLALA AHFRGQIYWA KDIIFLVTEH DLLGTEAWLE bmy_07580T0/1-482 VPCGPESTNS QAVGLMLALA AHFRGQIYWA KDIIFLVTEH DLLGSEAWLE BACU001465/1-585 VPCGPESTNS QAVGLMLALA AHFRGQIYWA KDIIFLVTEH DLLGSEAWLE 201 250 ENSTTRP00000006068/1-586 AYHDVNVTGM QSSPLQGRAG AIQAAVALEL SSDVVTSLDV AVEGLNGQLP ENSP00000347206/1-621 AYHDVNVTGM QSSPLQGRAG AIQAAVALEL SSDVVTSLDV AVEGLNGQLP ENSBTAP00000019453/1-568 AYHDVNITGM QSSPLQGRAG AIQAAVALEL SSDVVTSLDV AVEGLNGQLP bmy_07580T0/1-482 GYHDINVTGM QSSPLQGRAG AIQAAVALEL SSDVVTSLDV VVEGLNGQLP BACU001465/1-585 AYHDVNVTGM QSSPLQGRAG AIQAAVALEL SSDVVTSLDV AVEGLNGQLP 251 300 ENSTTRP00000006068/1-586 NLDLLNLFQT FCQKGGLLCT LQGKLQPQDW TSADGPLQGV QTLLLMALQQ ENSP00000347206/1-621 NLDLLNLFQT FCQKGGLLCT LQGKLQPEDW TSLDGPLQGL QTLLLMVLRQ ENSBTAP00000019453/1-568 NLDLLNLFQT FCQKGGLLCT LQGKLQPQDW TSIDGPLQSV QTLLLMVLQQ bmy_07580T0/1-482 NLDLLNLFQT FCQKGGLLCT LQGKLQPQDW PAVDGPPQAV QTLLLMALQQ BACU001465/1-585 NLDLLNLCQT FCQKGGLLCT LQGK--PQDW PSVDGPLQGV QTLLLMVLQQ 301 350 ENSTTRP00000006068/1-586 ASGHPHGAHG LFLRYRVEAL TLRGVNSFRQ YKYDLVAVGK ALEGMFRKLN ENSP00000347206/1-621 ASGRPHGSHG LFLRYRVEAL TLRGINSFRQ YKYDLVAVGK ALEGMFRKLN ENSBTAP00000019453/1-568 ASGRPHGAHG LFLRYRVEAL TLRGINSFRQ YKYDLVAVGK ALEGMFRKLN bmy_07580T0/1-482 ASGHPHGAHG LFLRYRVEAL TLRGINSFRQ YKYDLVAVGK ALEGMFRKLN BACU001465/1-585 ASGHPHGAHG LFLRYRVEAL TLRGINSFRQ YKYDLVAVGK ALEGMFRKLN 351 400 ENSTTRP00000006068/1-586 HLLERLHQSF FFYLLPALSR FVSIGLYMPA AGFLLLVLGL KALELWMQLH ENSP00000347206/1-621 HLLERLHQSF FLYLLPGLSR FVSIGLYMPA VGFLLLVLGL KALELWMQLH ENSBTAP00000019453/1-568 HLLERLHQSF FFYLLPALSR FVSIGLYMPA AGFLLLVLGL KALELWMQLH bmy_07580T0/1-482 HLLERLHQSF FFYLLPALSR FVSIGLYMPA AGFLLLVLGL KALELWMQLH BACU001465/1-585 HLLERLHQSF FFYLLPALSR FVSIGLYMPA AGFLLL---- ---------- 401 450 ENSTTRP00000006068/1-586 EAGVGPEEAG GTPGSSPPLP AAQ------- ---------- ---------- ENSP00000347206/1-621 EAGMGLEEPG GAPGPSVPLP PSQ------- ---------- ---------- ENSBTAP00000019453/1-568 EAGVGPEEA- ---GENPPHP LTQ------- ---------- ---------- bmy_07580T0/1-482 EAGVGPEQAG GTSGSSPPLP ATQVTGPHSC CCGPGGWLLL PLSLSCWRDG BACU001465/1-585 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000006068/1-586 ---------- ---------- RVGLASLVAP LLISQAVGLA LYVLPVLGQH ENSP00000347206/1-621 ---------- ---------- GVGLASLVAP LLISQAMGLA LYVLPVLGQH ENSBTAP00000019453/1-568 ---------- ---------- GVGLASLVAP LLVSQAMGLA LYILPVLGQH bmy_07580T0/1-482 EDPWDAPGPG SVSKCPCALQ RVGLASLVAP LLISQAVGLA LYVLPVLGQH BACU001465/1-585 ---------- ---------- RVGLASLVAP LLISQAVGLA LYVLPVLGQH 501 550 ENSTTRP00000006068/1-586 VAAQHFPVAE AEAVVLTLLA VYAAGLALPH STHWVLSTQA PDRSWMALKL ENSP00000347206/1-621 VATQHFPVAE AEAVVLTLLA IYAAGLALPH NTHRVVSTQA PDRGWMALKL ENSBTAP00000019453/1-568 VATQHFPVAE AEAVVLTLLA IYAAGLALPH NTHRVVSTQA PDRGWMALKL bmy_07580T0/1-482 VAAQHFPVAE AEAVVLTLLA VYAAGLALPH STHW------ ---------- BACU001465/1-585 VAAQHFPVAE AEAVVLTLLA VYAAGLALPH STHWVASTQA PDRSWMALKL 551 600 ENSTTRP00000006068/1-586 VALIYLALQL ACITLTNFSL GFLLAATMVP GAALTKPSGP RPLCAALLVL ENSP00000347206/1-621 VALIYLALQL GCIALTNFSL GFLLATTMVP TAALAKPHGP RTLYAALLVL ENSBTAP00000019453/1-568 VALIYLALQL ACITLTNFSL GFLLAASMVP AAAITKPSEP RALYAALLVL bmy_07580T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU001465/1-585 VALIYLALQL ACITLTNFAL GFLLAATMVP GAALTKPSGP RPLCAALLVL 601 650 ENSTTRP00000006068/1-586 TSPAATLLGG LFLWRQLQEA PLSLAEGWRL FLAVLAQGVL AHHTYGALLF ENSP00000347206/1-621 TSPAATLLGS LFLWRELQEA PLSLAEGWQL FLAALAQGVL EHHTYGALLF ENSBTAP00000019453/1-568 TSPAATLLGS LFLWRELQEA PLSLTEGWQL FLATLAQGVL EHHTYGALLF bmy_07580T0/1-482 ---------- ---------- ---------- ---------- ---------- BACU001465/1-585 TSPAATLLGG LFLWQQLQEA PLSPAEGWRL FLAALAQGVL EHHTYGALLF 651 700 ENSTTRP00000006068/1-586 PLLALGLFPC WLLFWNVLFW K ENSP00000347206/1-621 PLLSLGLYPC WLLFWNVLFW K ENSBTAP00000019453/1-568 PLLALGLYPC WLLFWNVLFW K bmy_07580T0/1-482 ---------- ---------- - BACU001465/1-585 PLLALGLYPC WLLFWNVLFW K