KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:54 2014 Check: 00 .. Name: ENSTTRP00000001778/1-504 Len: 511 Check: 1179 Weight: 1.00 Name: ENSP00000371535/1-501 Len: 511 Check: 1734 Weight: 1.00 Name: ENSBTAP00000019464/1-504 Len: 511 Check: 3943 Weight: 1.00 Name: bmy_02065T0/1-268 Len: 511 Check: 3645 Weight: 1.00 Name: BACU002249/1-507 Len: 511 Check: 5048 Weight: 1.00 // 1 50 ENSTTRP00000001778/1-504 MNRESFAAGE RLVSPAYVRQ GCEARRSHEH LIRLLLEKGK CPEDGWDEST ENSP00000371535/1-501 MNRESFAAGE RLVSPAYVRQ GCEARRSHEH LIRLLLEKGK CPENGWDEST ENSBTAP00000019464/1-504 MNREFFAAGE RLVSPAYVRQ GCEARRSHEH LMRLLLEKGK CPEDGWDEST bmy_02065T0/1-268 MNRESFAAGE RLVSPAYVRQ GCEARRSHEH LIRLLLEKGK CPEDGWDEST BACU002249/1-507 MNRESFAAGE RLVSPAYMWQ GCEARRSHEH LIRLLLEKGK CPEDGWDEST 51 100 ENSTTRP00000001778/1-504 LELFLHELAI MDSNNFLGNC GVGEREGRVA SALVARRHYX XXXXXXXXXX ENSP00000371535/1-501 LELFLHELAI MDSNNFLGNC GVGEREGRVA SALVARRHYR FIHGIGRSGD ENSBTAP00000019464/1-504 LELFLHELAI MDSNNFLGNC GVGEREGRVA SALVARRHYR FIHGIGRSGD bmy_02065T0/1-268 LELFLHELAI MDSNNFLGNC GVGEREGRVA SALVARRHYR FIHGIGRSGD BACU002249/1-507 LELFLHELAI MDSNNFLGNC GVGEREGRVA SALVARRHYR FIHGIGRSGD 101 150 ENSTTRP00000001778/1-504 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX VHTVTNCFVV PMATGMSLTL ENSP00000371535/1-501 ISAVQPKAAG SSLLNKITNS LVLDIIKLAG VHTVANCFVV PMATGMSLTL ENSBTAP00000019464/1-504 ISAVQPKAAG SSLLNKITNS LVLDIIKLAG VHTVTSCFVV PMATGMSLTL bmy_02065T0/1-268 ISAVQPKAAG SSLLNKVTNS LVLDIIKLAG VHTVTNCFVV PMATGMSLTL BACU002249/1-507 ISAVQPKAAG SSLLNKITNS LVLDIIKLAG VHTVTNCFVV PMATGMSLTL 151 200 ENSTTRP00000001778/1-504 CFLTLRHKRP KAKYIIWPRI DQKSCFKSMI TAGFEPVVIE NVLEGDELRT ENSP00000371535/1-501 CFLTLRHKRP KAKYIIWPRI DQKSCFKSMI TAGFEPVVIE NVLEGDELRT ENSBTAP00000019464/1-504 CFLTLRHRRP KAKYIIWPRI DQKSCFKSMI TAGFEPVVIE NILEGDELRT bmy_02065T0/1-268 CFLTLRHKRP KAKYIIWPRI DQKSCFKSMI TAGFEPVVIE NVLEGDELRT BACU002249/1-507 CFLTLRHKRP KAKYIIWPRI DQKSCFKSMI TAGFEPVVIE NVLEGDELRT 201 250 ENSTTRP00000001778/1-504 DLKAVEAKVH ELGPDYVLCV HSTTSCFAPR VPDRLEELAV ICANYDIPHI ENSP00000371535/1-501 DLKAVEAKVQ ELGPDCILCI HSTTSCFAPR VPDRLEELAV ICANYDIPHI ENSBTAP00000019464/1-504 DLKAVEAKVQ ELGPDHVLCV HSTTSCFAPR VPDRLEELAV ICANYGIPHI bmy_02065T0/1-268 DLKAVEAKVQ ELGPDYVLCV HSTTSCFAPR VPDRLEELAV ICANYGIPHI BACU002249/1-507 DLKAVEAKVQ ELGPDYVLCV HSTTSCFAPR VPDRLEELAV ICANYGIPHI 251 300 ENSTTRP00000001778/1-504 VNNAYGVQSS KCMHLIQQGA RVGRIDAFVQ SLDKNFMVPV GGAIIAGFND ENSP00000371535/1-501 VNNAYGVQSS KCMHLIQQGA RVGRIDAFVQ SLDKNFMVPV GGAIIAGFND ENSBTAP00000019464/1-504 VNNAYGVQSS KCMHLIQQGA RVGRIDAFVQ SLDKNFMVPV GGAIIAGFND bmy_02065T0/1-268 VNNAYGVQSS KCMHLIQQ-- ---------- ---------- ---------- BACU002249/1-507 VNNAYGVQSS KCMHLIQQGA RVGRIDAFVQ SLDKNFMVPV GGAIIAGFND 301 350 ENSTTRP00000001778/1-504 SFIQEISKMY PGRASASPSL DVLITLLSLG SNGYKKLLKE RK------EM ENSP00000371535/1-501 SFIQEISKMY PGRASASPSL DVLITLLSLG SNGYKKLLKE RK------EM ENSBTAP00000019464/1-504 SFIQEISKMY PGRASASPSL DVLITLLSLG SNGYKKLLKE RK------EM bmy_02065T0/1-268 ---------- ---------- ---------- ---------- ---------- BACU002249/1-507 SFIQEISKMY PGRASASPTL DVLITLLSLG SNGYKKLLKE RKVEALKRQM 351 400 ENSTTRP00000001778/1-504 FSYLSNELKK LSEAYNERVL HTPHNPISLA MTLKTLDKHC DKAVTRLGSM ENSP00000371535/1-501 FSYLSNQIKK LSEAYNERLL HTPHNPISLA MTLKTLDEHR DKAVTQLGSM ENSBTAP00000019464/1-504 FSYLSNQLKK LSEAYNERLL HTPHNPISLA MTLRTLDKHC SRAVTQLGSM bmy_02065T0/1-268 ---------- ---------- ---------- ---------- ---------- BACU002249/1-507 DKFFLFSFGS LKICLVVTCQ LQEEEP---A MTLKTLDKHY DKAVTQLGSM 401 450 ENSTTRP00000001778/1-504 LFTRQVSGAR VVPLGSVQTV SGYTFRGFMS HTNNYPCAYL NAASAIGMKT ENSP00000371535/1-501 LFTRQVSGAR VVPLGSMQTV SGYTFRGFMS HTNNYPCAYL NAASAIGMKM ENSBTAP00000019464/1-504 LFTRQVSGAR VVPLGSMQTV SGYTFRGFMS HTNNYPCAYL NAASAIGMKT bmy_02065T0/1-268 ---------- ---------- ---------- ---------- ---------- BACU002249/1-507 LFTRQVSGAR VVPLGSLQTV SGYTFRGFMS HTNNYPCAYL NAASAIGMKT 451 500 ENSTTRP00000001778/1-504 QDVDLFINRL DKCLKTVRKE QSKESDVSGV DNYDKTEDVV IEEMALKPDN ENSP00000371535/1-501 QDVDLFIKRL DRCLKAVRKE RSKESD---- DNYDKTEDVD IEEMALKLDN ENSBTAP00000019464/1-504 QDVDLFIKRL DKCLKTVRKE QNKESDISGV DNNDKTEDVD IEEMALKLDN bmy_02065T0/1-268 ---------- ---------- ---------- ---------- ---------- BACU002249/1-507 QDVDLFIKRL DKCLKTVGKE QNKESDVSGV DNYDKTEDVD IEEMALKIDN 501 550 ENSTTRP00000001778/1-504 VLLGTCQDSS - ENSP00000371535/1-501 VLLDTYQDAS S ENSBTAP00000019464/1-504 VCLDTCQDSS - bmy_02065T0/1-268 ---------- - BACU002249/1-507 VLLGTCQDSS -