KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:56 2014 Check: 00 .. Name: ENSTTRP00000015301/1-1118 Len: 1184 Check: 4079 Weight: 1.00 Name: ENSP00000427772/1-1119 Len: 1184 Check: 5113 Weight: 1.00 Name: ENSBTAP00000019472/1-1067 Len: 1184 Check: 6174 Weight: 1.00 Name: bmy_01537T0/1-1015 Len: 1184 Check: 1821 Weight: 1.00 Name: BACU003699/1-1020 Len: 1184 Check: 7791 Weight: 1.00 // 1 50 ENSTTRP00000015301/1-1118 MPGPELPLPD GWEEAHDFDG KVYYIDHTSR TTSWIDPRDR YTKPLTFADC ENSP00000427772/1-1119 MPRPELPLPE GWEEARDFDG KVYYIDHTNR TTSWIDPRDR YTKPLTFADC ENSBTAP00000019472/1-1067 ---------- ---------- ---------- ---------R YTKPLTFADC bmy_01537T0/1-1015 ---------- ---------- ---------- ---------- YTKPLTFADC BACU003699/1-1020 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015301/1-1118 ISDELPLGWE EAYDPQVGDY FIDHNTKTTQ IEDPRVQWRR EQEHMLKDYL ENSP00000427772/1-1119 ISDELPLGWE EAYDPQVGDY FIDHNTKTTQ IEDPRVQWRR EQEHMLKDYL ENSBTAP00000019472/1-1067 ISDELPLGWE EAYDPQVGDY FIDHNTKTTQ IEDPRVQWRR EQEHMLKDYL bmy_01537T0/1-1015 ISDELPLGWE EAYDPQVGDY FIDHNTKTTQ IEDPRVQWRR EQEHMLKDYL BACU003699/1-1020 ---------- ---------- ---------- ---------- ----MLKDYL 101 150 ENSTTRP00000015301/1-1118 VVAQEALSAQ KEIYQVKQQR LELAQQEYQQ LHAVWEHKLG SQVSLVSGSS ENSP00000427772/1-1119 VVAQEALSAQ KEIYQVKQQR LELAQQEYQQ LHAVWEHKLG SQVSLVSGSS ENSBTAP00000019472/1-1067 VVAQEALSAQ KEIYQVKQQR LELAQQEYQQ LHAVWEHKLG SQVSLVSGSS bmy_01537T0/1-1015 VVAQEALSAQ KEIYQVKQQR LELAQQEYQQ LHAVWEHKLG SQVSLVSGSS BACU003699/1-1020 VVAQEALSAQ KEIYQVKQQR LELAQQEYQQ LHAVWEHKLG SQVSLVSGSS 151 200 ENSTTRP00000015301/1-1118 SSSKYDPEIL KAEIATAKSR VNKLKREMAH LQQELQFKER GFQTLKKIDK ENSP00000427772/1-1119 SSSKYDPEIL KAEIATAKSR VNKLKREMVH LQHELQFKER GFQTLKKIDK ENSBTAP00000019472/1-1067 SSSKYDPEIL KAEIATAKSR VNKLKREMVH LQQELQFKER GFQTLKKIDK bmy_01537T0/1-1015 SSSKYDPEIL KAEIATAKSR VNKLKREMVH LQQELQFKEH GFQTLKKIDK BACU003699/1-1020 SSSKYDPEIL KAEIATAKSR VNKLKREMVH LQQELQFKEH GFQTLKKIDK 201 250 ENSTTRP00000015301/1-1118 KMSDAQGSYK LDEAQAVLRE TKAIKKAITC GEKEKQDLIK SLAMLKDGFH ENSP00000427772/1-1119 KMSDAQGSYK LDEAQAVLRE TKAIKKAITC GEKEKQDLIK SLAMLKDGFR ENSBTAP00000019472/1-1067 KMSDAQGSYK LDEAQAVLRE TKAIKKAITC GEKEKQDLIK SLAMLKDGFR bmy_01537T0/1-1015 KMSDAQGSYK LDEAQAVLRE TKAIKKAITC GEKEKQDLIK SLAMLKDGFR BACU003699/1-1020 KMSDAPGSYK LDEAQAVLRE TKAIKKAITC GEKEKQDLIK SLAMLKDGFR 251 300 ENSTTRP00000015301/1-1118 TDRGSHSDLW SSSSSLESSG FPLPKQYLDV SSQTDISGSF GTSSNNQLAE ENSP00000427772/1-1119 TDRGSHSDLW SSSSSLESSS FPLPKQYLDV SSQTDISGSF GINSNNQLAE ENSBTAP00000019472/1-1067 TDRGSHSDLW SSSSSLESSG FPLPKQYLDV SSQTDISGSF GTSSNNQLAE bmy_01537T0/1-1015 TDRGSHSDLW SSSSSLESSG FPLPKQYLDV SSQTDISGSF GTSSNNQ--- BACU003699/1-1020 TDRGSHSDLW SSSSSLESSG FPLPKQYLDV SSQTDISGSF GTSSNNQLAE 301 350 ENSTTRP00000015301/1-1118 KVRLRLRYEE AKRRIANLKI QLAKLDSEAW PGVLDSERDR LILINEKEEL ENSP00000427772/1-1119 KVRLRLRYEE AKRRIANLKI QLAKLDSEAW PGVLDSERDR LILINEKEEL ENSBTAP00000019472/1-1067 KVRLRLRYEE AKRRIANLKI QLAKLDSEAW PGVLDSERDR LILINEKEEL bmy_01537T0/1-1015 ---------- ----IANLKI QLAKLDSEAW PGVLDSERDR LILINEKEEL BACU003699/1-1020 KVRLRLRYEE AKRRIANLKI QLAKLDSEAW PGVLDSERDR LILINEKEEL 351 400 ENSTTRP00000015301/1-1118 LKEMRFISPR KWTQGEVEQL EMARKRLEKD LQAARDTQSK ALTERLKLNS ENSP00000427772/1-1119 LKEMRFISPR KWTQGEVEQL EMARKRLEKD LQAARDTQSK ALTERLKLNS ENSBTAP00000019472/1-1067 LKEMRFISPR KWTQGEVEQL EMARKRLEKD LQAARDTQSK ALTERLKLNS bmy_01537T0/1-1015 LKEMRFISPR KWTQGEVEQL EMARKRLEKD LQAARDTQSK ALTERLKLNS BACU003699/1-1020 LKEMRFISPR KWTQGEVEQL EMARKRLEKD LQAARDTQSK ALTERLKLNS 401 450 ENSTTRP00000015301/1-1118 KRNQLVRELE EATRQVAALH CQLKSLSGSM QSLSSGSSPG SLTSSRGSLA ENSP00000427772/1-1119 KRNQLVRELE EATRQVATLH SQLKSLSSSM QSLSSGSSPG SLTSSRGSLV ENSBTAP00000019472/1-1067 KRNQLVRELE EATRQVAALH SQLKSLSGSM QSLSSGSSPG SLTSSRGSLA bmy_01537T0/1-1015 KRNQLVRELE EATRQVAALH SQLKSLSGSM QSLSSGSSPG SLTSSRGSLA BACU003699/1-1020 KRNQLVRELE EATRQVAALH SQLKSLSGSM QSLSSGSSPG SLTSSRGSLA 451 500 ENSTTRP00000015301/1-1118 ASSLDSSTSA SFTDLYYDPF EQLDSELQSK VEFLLLEGAT GFRPSGCITT ENSP00000427772/1-1119 ASSLDSSTSA SFTDLYYDPF EQLDSELQSK VEFLLLEGAT GFRPSGCITT ENSBTAP00000019472/1-1067 ASSLDSSASA SFTDLYYDPF EQLDSELQNK VEFLLLEGAT GFRPSGCITT bmy_01537T0/1-1015 ASSLDSSTSA SFTDLYYDPF EQLDSELQSK VEFLLLEGAT GFRPSGCITT BACU003699/1-1020 ASSLDSSTSA SFTDLYYDPF EQLDSELQSK VEFLLLEGAT GFRPSGCITT 501 550 ENSTTRP00000015301/1-1118 IHEDEVAKTQ KAEGGGRLQA LRSLSGTPKS MSSLSPRSSL SSPSPPCSPL ENSP00000427772/1-1119 IHEDEVAKTQ KAEGGGRLQA LRSLSGTPKS MTSLSPRSSL SSPSPPCSPL ENSBTAP00000019472/1-1067 IHEDEVAKTQ KAEGGGRLQA LRSLSGTPKS MTSLSPRSSL SSPSPPCSPL bmy_01537T0/1-1015 IHEDEVAKTQ KAEGGGRLQA LRSLSGTPKS MTSLSPRSSL SSPSPPCSPL BACU003699/1-1020 IHEDEVAKTQ KAEGGGRLQA LRSLSGTPKS MTSLSPRSSL SSPSPPCSPL 551 600 ENSTTRP00000015301/1-1118 IADPLLAGDA FLSNLEFEDP ELSATLCELS LGNSTRERYR LEEPGTEGKP ENSP00000427772/1-1119 MADPLLAGDA FLNSLEFEDP ELSATLCELS LGNSAQERYR LEEPGTEGKQ ENSBTAP00000019472/1-1067 IAD--LAGEA FLSNLEFEDP ELSAALCELS LGSSMRERYR LEEPGPEGKP bmy_01537T0/1-1015 IADPLLAGDA FLSNLEFEDP ELSAALCELS LGNSTRERYR LEEPGTEGKP BACU003699/1-1020 IADPLLAGDA FLSNLEFEDP ELSAALCELS LGNSTRERYR LEEPGTEGKP 601 650 ENSTTRP00000015301/1-1118 LGQAANKAQG CDLKVACVSA AVSDESVAGD SGVYEASVQR LGASEAAAFD ENSP00000427772/1-1119 LGQAVNTAQG CGLKVACVSA AVSDESVAGD SGVYEASVQR LGASEAAAFD ENSBTAP00000019472/1-1067 LGQAVNMAQG CGLKVACVSA AVSDESVAGD SGVYEASVQR LGVSEAAAFD bmy_01537T0/1-1015 LGQAANKAQG CDLKVACVSA AVSDESVAGD SGVYEASVQR LGASEAAAFD BACU003699/1-1020 LGQATNKAQG CDLKVACVSA AVSDESVAGD SGVYEASVQR LGASEAAAFD 651 700 ENSTTRP00000015301/1-1118 SDESEVVGAT RVQIALKYDE KNKQFAILII QLTNLSALSP QQDRKVNIRV ENSP00000427772/1-1119 SDESEAVGAT RIQIALKYDE KNKQFAILII QLSNLSALLQ QQDQKVNIRV ENSBTAP00000019472/1-1067 SDESEAVGAT RVQVALKYDE KNKQFAIFII QLSNLSALLL QQDQKVNIRA bmy_01537T0/1-1015 SDESEVVGAT R--------- ---------- ---------- ---------- BACU003699/1-1020 SDESEVVGAT RVQIALKYDE KNKQFAILII QLSNLSALLL QQDRKVNIRV 701 750 ENSTTRP00000015301/1-1118 AILPCSESTT CLFRTRPLDA SDTLVFNEVF WVSMSYPALH QKTLRVDVCA ENSP00000427772/1-1119 AVLPCSESTT CLFRTRPLDA SDTLVFNEVF WVSMSYPALH QKTLRVDVCT ENSBTAP00000019472/1-1067 ALLPCSESTT CLFRTRPLDA ADTLVFNEVF WVSMSYPALH QKTLRVDVCT bmy_01537T0/1-1015 ---------- ---------- ---------- ---------- ---------- BACU003699/1-1020 AILPCSESTT CLFRTRPLDA SDTLVFNEVF WVSMSYPALH QKTLRVDVCA 751 800 ENSTTRP00000015301/1-1118 TDRSHLEACL GGAQISLAEV CRSGERSTRW YNLLSYKYLK KQSREPKPVG ENSP00000427772/1-1119 TDRSHLEECL GGAQISLAEV CRSGERSTRW YNLLSYKYLK KQSRELKPVG ENSBTAP00000019472/1-1067 TDRCQLEECL GGAQISLAEV CRSGERSTRW YNLLSYKYLK KQSREPKPVG bmy_01537T0/1-1015 ---------- GGAQISLAEV CRSGERSTRW YNLLSYKYLK KQSREPKPAG BACU003699/1-1020 TDRSHLEACL GGAQISLAEV CRSGERSTRW YNLLSYKYLK KQSREPKPAG 801 850 ENSTTRP00000015301/1-1118 AMAPMPGPES TDAVSALLEQ TAVELEKRQE GRSSAQTLED S--------X ENSP00000427772/1-1119 VMAPASGPAS TDAVSALLEQ TAVELEKRQE GRSSTQTLED S--------W ENSBTAP00000019472/1-1067 AMAPIPGPES TDAVSALLEQ TAVELEKRQE ERSSTQTLED T--------W bmy_01537T0/1-1015 AMAPMPGPES TDAVSALLEQ TAVELEKRQE GRSSAQTLED SCSAVPAQLW BACU003699/1-1020 AMAPMPGPES TDAVSALLEQ TAVELEKRQE GRSSTQTLED S--------W 851 900 ENSTTRP00000015301/1-1118 ---------- ---------- ---------- -------XXX XXXXXXXXXX ENSP00000427772/1-1119 ---------- ---------- ---------- -------RYE E-TSENEAVA ENSBTAP00000019472/1-1067 ---------- ---------- ---------- -------RYE EGTSENEAAA bmy_01537T0/1-1015 SGGLQRLALR SHLLSFPLGT QGPKEGVIVT PSFYLFRRCE EGTSENETAA BACU003699/1-1020 ---------- ---------- ---------- -------RCE EGTSENETAA 901 950 ENSTTRP00000015301/1-1118 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000427772/1-1119 ----EEEEEE VEEEEGEEDV FTEKASPDMD GYPALKVDKE TNTETPAPSP ENSBTAP00000019472/1-1067 ----EEEEEE EEEQEGEEE- ----ASPDMD GCPAVKVDKE TNTETPAPSP bmy_01537T0/1-1015 EEEEEEEEEE EEEGEGEEDI FAEKASHDMD ECPALKVDKE TNTETPAPSP BACU003699/1-1020 ---EEEEEEE EEEGEGEEDI FAEKASHDMD ECPALKVDKE TNTETPAPSP 951 1000 ENSTTRP00000015301/1-1118 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000427772/1-1119 TVVRPKDRRV GTPSQGPFLR GSTIIRSKTF SPGPQSQYVC RLNRSDSDSS ENSBTAP00000019472/1-1067 TVVRPKDRRV GTPSPGPFLR GSTIIRSKTF SPGPQSQYVC RLNRSDSDSS bmy_01537T0/1-1015 TVVRPKDRRV GAPSPGPFLR GSTIIRSKTF SPGPQSQYVC RLNRSDSDSS BACU003699/1-1020 TVVRPKDRRV GAPSPGPFLR GSTIIRSKTF SPGPQSQYVC RLNRSDSDSS 1001 1050 ENSTTRP00000015301/1-1118 XXXXXXXXXX XXXXXXXXXX XX------XX XXXXXXXXXX XXXXXXXXXX ENSP00000427772/1-1119 TLSKKPPFVR NSLERRSVRM KRPSPPPQPS SVKSLRSERL IRTSLDLELD ENSBTAP00000019472/1-1067 TLSKKPPFVR NSLERRSVRM KR------PS SVKSLRAERL PRTSLDLELD bmy_01537T0/1-1015 TLSKKPPFVR NSLERRSVRM KR------PS SVKSLRAERL PRTSLDLELD BACU003699/1-1020 TLSKKPPFVR NSLERRSVRM KR------PL SVKSLRAERL PRTSLDLELD 1051 1100 ENSTTRP00000015301/1-1118 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000427772/1-1119 LQATRTWHSQ LTQEISVLKE LKEQLEQAKS HGEKELPQWL REDERFRLLL ENSBTAP00000019472/1-1067 LQATRTWHSQ LTQEISVLKE LKEQLEQAKS HGEKELPQWV REDERFRLLL bmy_01537T0/1-1015 LQATRTWHSQ LTQEISVLKE LKEQLEQAKS HGEKELPPWL REDERFRLLL BACU003699/1-1020 LQATRTWHSQ LTQEISVLKE LKEQLEQAKS HGEKELPPWL REDERFRLLL 1101 1150 ENSTTRP00000015301/1-1118 XXXXXXXMDR AEHKGELQTD KMMRSAAKDV HRLRGQSCKE PPEVQSFREK ENSP00000427772/1-1119 RMLEKRQMDR AEHKGELQTD KMMRAAAKDV HRLRGQSCKE PPEVQSFREK ENSBTAP00000019472/1-1067 RMLEKR-MDR AEHKGELQTD KMMRSAAKDV HRLRGQSCKE PPEVQSFREK bmy_01537T0/1-1015 RMLEKR-MDR AEHKGELQTD KMMRSAAKDV HRLRGQSCKE PPEVQSFRGF BACU003699/1-1020 RMLEKR-MDR AEHRGELQTD KMMRSAAKDV HRLRGQSCKE PPEVQSFREK 1151 1200 ENSTTRP00000015301/1-1118 MAFFT----- -----RP--- --RLNIPTLS ADDV ENSP00000427772/1-1119 MAFFT----- -----RP--- --RMNIPALS ADDV ENSBTAP00000019472/1-1067 MAFFT----- -----RP--- --RMNIPTLS ADDV bmy_01537T0/1-1015 TAIRSNVWGT VILKGRPADV TAQLTFPT-- ---- BACU003699/1-1020 MAFFT----- -----RP--- --RLNIPTLS ADDV