KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:07:57 2014 Check: 00 .. Name: ENSP00000342278/1-719 Len: 1177 Check: 7968 Weight: 1.00 Name: ENSBTAP00000019477/1-714 Len: 1177 Check: 9172 Weight: 1.00 Name: bmy_13615T0/1-1092 Len: 1177 Check: 5949 Weight: 1.00 Name: ENSTTRP00000002253/1-693 Len: 1177 Check: 2800 Weight: 1.00 // 1 50 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 MKKLRKTRAN QLDKFIEDRL LPDKDFRTQV NEAIHIICSF LKERCFQSAP ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 YPVRVSKVVK GGSSGKGTTL KGLSDADLVI FVTSLTSFRE QLQHRRRFIE ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 EIRKQLEACQ REEIFEVVFE VQKRRRKKPR ALSFVLRSPR LLQGVKFDVL ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 PAFDALCEHS QSQGVSAFVL YKFIEDHLLP DEDFRTQVNE AIHIICSFLK ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 ERCFRWASHP VRVSKVVKLQ RAFLKERPTK LKSLIRLVKH WYQMLLTVYA ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 WEQGSMETRF STAQGFQTVL ELVLKHQKIC IYWTKYYBFE NPIIGQYLSR ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 QLVKPRPVIL DPADPTGNIG GGDAYSWQRL AQEARAWLSY PCFKKSDGSP ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000342278/1-719 ---------- ------MGNG ESQLSSVPAQ KLGWFIQEYL KPYEECQTLI ENSBTAP00000019477/1-714 ---------- ------MGSR ESHLYEKPSE KLEEFIQNHL RPSEDCQKDI bmy_13615T0/1-1092 VGSWDVSLSS QQPARAMGNW ESHLYERPAQ KLGEFIQDNL RPFEDCQKRI ENSTTRP00000002253/1-693 ---------- ------MGNW ESHLYERPAQ KLGEFTQDNL RPFEDCQKQI 401 450 ENSP00000342278/1-719 DEMVNTICDV LQEPEQFPLV QGVAIGGSYG RKTVLRGNSD GTLVLFFSDL ENSBTAP00000019477/1-714 DQSVDTICEV LQEPCPSLTV TGVAKGGSYG RRTVLRGNSD GILVVFFGDL bmy_13615T0/1-1092 DQTVDTICAV LQEAEHFPLV TGVAKGGSYG RRTVLRGNSD GTLVIFISGL ENSTTRP00000002253/1-693 DQTVDTICAV LQEAEQFPLV TGVAKSGSYG RRTVLRGNSD GTLVIFIGGL 451 500 ENSP00000342278/1-719 KQFQDQKRSQ RDILDKTGDK LKFCLFTKWL KNNFEIQKSL --DGFTIQVF ENSBTAP00000019477/1-714 EQFQDQEKRQ YELLSKIWAQ MKHCESTWKL AAKMELQNTN RSSRVTIQLS bmy_13615T0/1-1092 EQFQDQKKSQ RDLLSKIWAQ LKHCELTMKL AAKMEIQSIN --GKLTIQLS ENSTTRP00000002253/1-693 EKFQDQKKKQ HDFLSKIWAQ LKRCELTMKL AAKMEIQSIS --GKLTIQLS 501 550 ENSP00000342278/1-719 TKNQRISFEV LAAFNALSLN DNPSPWIYRE LKRSLDKTNA SPGEFAVCFT ENSBTAP00000019477/1-714 TKQQSITFNV LPAFNALGLS EKSSLWSYRE LKRSLDMVKA RPGEFSVCFT bmy_13615T0/1-1092 TKQQSITFEM LPAFNALGLS EKPSLCTYRE LKRSLDMVKA SPGEFSICFT ENSTTRP00000002253/1-693 TEQQSITFEM LPAFNALGLS EKPSLCTYRE LKRSLDMVKA SPGEFSICFT 551 600 ENSP00000342278/1-719 ELQQKFFDNR PGKLKDLILL IKHWHQQCQK KIKDLPSLSP YALELLTVYA ENSBTAP00000019477/1-714 ELQEKFFSNY PSKLKDLILL VKHWFQKCQE KLINSSLLPP YALELLTVYA bmy_13615T0/1-1092 ELQEKFFSNH PSKLKDLILL VKYWCQKCQE KLKDSSLLPL YALELLTVYA ENSTTRP00000002253/1-693 ELQEKFFSNH PSKLKDLILL VKYWCQKCQE KLKDSSLLPL YALELLTVYA 601 650 ENSP00000342278/1-719 WEQGCRKDNF DIAEGVRTVL ELIKCQEKLC IYWMVNYNFE DETIRNILLH ENSBTAP00000019477/1-714 WEQGCGAEDF DMAEGVRTVL RLIEKQEQLC VYWTVNYNFG DEIVRNILLS bmy_13615T0/1-1092 WEQGCGAEDF DIAEGIRTVL ELISKQEQLC VYWTVNYNFE DETVRNILLG ENSTTRP00000002253/1-693 WEQGCGAEDF DIT-GIRTVL ELIRKQEQLC VYWTVNYNFE DKTVRSILLG 651 700 ENSP00000342278/1-719 QLQSARPVIL DPVDPTNNVS GDKICWQWLK KEAQTWLTSP NLDNELPAPS ENSBTAP00000019477/1-714 QLQAPRPVIL DPTDPTNNVS MDNTCWLQLK HEAQNWLRSL RQ-NESPGPS bmy_13615T0/1-1092 HLRSP----- ------SNVS KDNTCWQLLK QEAQTWLSSL RL-NESPGLS ENSTTRP00000002253/1-693 HL-SPRPVIL DPTDPTSNVS EDNTCWQLLK QEAQTGLSSL RL-NESPGLS 701 750 ENSP00000342278/1-719 WNVLPAPLFT TPGHLLDKFI KEFLQPNKCF LEQIDSAVNI IRTFLKENCF ENSBTAP00000019477/1-714 WNVLPASLYI TPGHLLDKFV KDFLQPNQTF QDQIKKALKI ICSFLEENCF bmy_13615T0/1-1092 WNVLPAPLYV TPGHLLDKFI KDCLQPNRTF LDQIKKAVDV ICKFLKENCF ENSTTRP00000002253/1-693 WNVLPVPLYM TPGHLLDKFI KDLLQPNR-F LDQIKAA-DI ICKFLKENCF 751 800 ENSP00000342278/1-719 RQSTAKIQ-I VRGGSTAKGT ALKTGSDADL VVFHNSLKSY TSQKNERHKI ENSBTAP00000019477/1-714 RHSTTKIQ-V IQGGSTVKGT ALKTGSDASL VVFANSLKSY TSPKNERYNI bmy_13615T0/1-1092 RHSTTKCQKI VKGGSTAKGT ALKSGSDADL VVFVDSLKSY TSQKSERCNI ENSTTRP00000002253/1-693 RHSTTKCQKI VKGGSTAKGT ALKSGSDADL VVFADPLKSY TSQKNERCNI 801 850 ENSP00000342278/1-719 VKEIHEQLKA FWREKEEELE VSFEPPKWKA PRVLSFSLKS KVLNESVSFD ENSBTAP00000019477/1-714 IKEIHEQLEA --CRQEKDFE VKFEISKWKP PWVLSFTLKS KVLNESVDFD bmy_13615T0/1-1092 IKEIHKQLEA --CQQEKDFE VKFEISKWKA PRVLSFTLKS KVLNESVDFD ENSTTRP00000002253/1-693 IKEIHKQPEA --CQREKDFE VKFEISKWKA PRVLSLTLKS KVLNGSVDFD 851 900 ENSP00000342278/1-719 VLPAFNALGQ LSSGSTPSPE VYAGLIDLYK SSDL-PGGEF STCFTVLQRN ENSBTAP00000019477/1-714 VLPAFNALGE LKSGSTPSPR TYTELIHLYK PSDVFLEGEF SACFTKLQRN bmy_13615T0/1-1092 VLPAFNALGA LKSGSTPSPR IYADLIHLHK SSDA-LGGEF STCFTELQRN ENSTTRP00000002253/1-693 VRPAFNALGE LKSDSTPSPR IYADLIYLHK SSDT-LGGEF STCFTELQRN 901 950 ENSP00000342278/1-719 FIRSRPTKLK DLIRLVKHWY KE-------- ---------- ---------- ENSBTAP00000019477/1-714 FVRSLPLKLK DLIRLLKHWY CG-------- ---------- ---------- bmy_13615T0/1-1092 FVCSRPTKLK DLIRLVKHWY KWTQMLPLGR QVEATGSARG CIFCILLVRL ENSTTRP00000002253/1-693 FVCSRPTELK DLIRL---WY KW-------- ---------- ---------- 951 1000 ENSP00000342278/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019477/1-714 ---------- ---------- ---------- ---------- ---------- bmy_13615T0/1-1092 PSLPSVLLTG PVPALRLKTW VPYCGPSSPS CAPSTALATL ISPSCFNQYR ENSTTRP00000002253/1-693 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000342278/1-719 --------CE RKLKPKGSLP PKYALELLTI YAWEQGSGVP DFDTAEGFRT ENSBTAP00000019477/1-714 --------CE KKLKQKGSLP PKYALELLSI YAWEKGSGAQ DFDMAEGFRT bmy_13615T0/1-1092 LMFPLFPQCG SKLKQKGSLP PKYALELLTI YAWEQGSGAQ DFDTAEGFRT ENSTTRP00000002253/1-693 --------CG SKLKQKGSLP PKYALDLLTI YAWEQGSGAQ DFDTAEGFRT 1051 1100 ENSP00000342278/1-719 VLELVTQYQQ LCIFWKVNYN FEDETVRKFL LSQLQKTRPV ILDPAEPTGD ENSBTAP00000019477/1-714 VLELVIQYQH LCVFWTVNYS FDDEILRNFL LGQIRRTRPV ILDPADPTGD bmy_13615T0/1-1092 VLELVTKYKH LCVFWLVNYN FDDETVRNFL LTQIQRTR-- CLKPQPPP-- ENSTTRP00000002253/1-693 VLELVTN-QH LCVLWMVNYN FDDEIVRRFL LTQIQRTRPV ILDPADPTGD 1101 1150 ENSP00000342278/1-719 VGGGDRWCWH LLAKEAKEWL SSPCFKDGTG NPIPPWKVPT --MQTPGSCG ENSBTAP00000019477/1-714 VGGGHRWCWH LLAKEATEWL SSLCFKDKSG CPIQPWNVPK KRVQTPGSCG bmy_13615T0/1-1092 ---------- --------FL -NL------- -------IPS ---------- ENSTTRP00000002253/1-693 VGGGDRWCWH LLAEEATELL -SLCFRDGSG CPIQSWNMPT --VQSPGSWG 1151 1200 ENSP00000342278/1-719 ARIHPIVNEM FSSRSHRILN NNSKRNF ENSBTAP00000019477/1-714 AGIYSMVNEM HLLRSHRFLD ------- bmy_13615T0/1-1092 -------NAI LVT------- ------- ENSTTRP00000002253/1-693 -RIHSIVSEM HLF------- -------