KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:07 2014 Check: 00 .. Name: bmy_03835T0/1-584 Len: 942 Check: 9040 Weight: 1.00 Name: ENSP00000426070/1-862 Len: 942 Check: 4105 Weight: 1.00 Name: ENSBTAP00000019490/1-868 Len: 942 Check: 3097 Weight: 1.00 Name: BACU018541/1-866 Len: 942 Check: 8991 Weight: 1.00 Name: ENSTTRP00000015427/1-861 Len: 942 Check: 832 Weight: 1.00 // 1 50 bmy_03835T0/1-584 ---------- MIQQAVGCTW TTELSEGRKT ---------- ---------Q ENSP00000426070/1-862 ------MLRN STFKNMQRRH TTLREKGRRQ AIRGPAYMFN EKGTSLTPEE ENSBTAP00000019490/1-868 MRHCDLWFGS STFKNMQRRH TTLREKGRRQ AIRGPAYMFN EKGTSLTPEE BACU018541/1-866 ---------- -------RRH TTLREKGRRQ AIRGPAYMFN EKGTSLTPEE ENSTTRP00000015427/1-861 -------LGS STFRNMQRRH TTLREKGRRQ AIRGPAYMFN EKGTSLTPEE 51 100 bmy_03835T0/1-584 KRLAD----- --PTIRRDFE KSIAAAFRSQ ASDGQGAI-- ---------- ENSP00000426070/1-862 ERFLDSAEYG NIPVVRKMLE ESKTLNFNCV DYMGQNALQL AVGNEHLEVT ENSBTAP00000019490/1-868 ERFLDSAEYG NIPVVRKMLE ESKTLNFNCV DYMGQNALQL AVGNEHLEVT BACU018541/1-866 ERFLDSAEYG NIPVVRKMLE ESKTLNFNCV DYMGQNALQL AVGNEHLEVT ENSTTRP00000015427/1-861 ERFLDSAEYG NIPVVRKMLE ESKTLNFNCV DYMGQNALQL AVGNEHLEVT 101 150 bmy_03835T0/1-584 ---------- ---------- --GKIR---- ---NTGSQKQ NQAGLNPEKE ENSP00000426070/1-862 ELLLKKENLA RVGDALLLAI SKGYVRIVEA ILNHPAFAQG QRLTLSPLEQ ENSBTAP00000019490/1-868 ELLLKKENLA RVGDALLLAI SKGYVRIVEA ILSHPAFAQG QRLALSPLEQ BACU018541/1-866 ELLLKKENLA RVGDALLLAI SKGYVRIVEA ILSHPAFAQG QRLTLSPLEQ ENSTTRP00000015427/1-861 ELLLKKENLA RVGDALLLAI SKGYVRIVEA ILSHPAFAQG QRLTLSPLEQ 151 200 bmy_03835T0/1-584 KLRDN----- ---------- ---------- ---------- ---------- ENSP00000426070/1-862 ELRDDDFYAY DEDGTRFSHD ITPIILAAHC QEYEIVHILL LKGARIERPH ENSBTAP00000019490/1-868 ELRDDDFYAY DEDGTRFSHD ITPIILAAHC QEYEIVHILL LKGARIERPH BACU018541/1-866 ELRDDDFYAY DEDGTRFSHD ITPIILAAHC QEYEIVHILL LKGARIERPH ENSTTRP00000015427/1-861 ELRDDDFYAY DEDGTRFSHD ITPIILAAHC QEYEIVHILL LKGARIERPH 201 250 bmy_03835T0/1-584 ---------- --------GR LPERLN--QQ LPGRALRYVN NQEHAMA--- ENSP00000426070/1-862 DYFCKCNECT EKQRKDSFSH SRSRMNAYKG LASAAYLSLS SEDPVLTALE ENSBTAP00000019490/1-868 DYFCKCNECT EKQRKDSFSH SRSRMNAYKG LASAAYLSLS SEDPVLTALE BACU018541/1-866 DYFCKCSECT EKQRKDSFSH SRSRMNAYKG LASAAYLSLS SEDPVLTALE ENSTTRP00000015427/1-861 DYFCKCNECT EKQRKDSFSH SRSRMNAYKG LASAAYLSLS SEDPVLTALE 251 300 bmy_03835T0/1-584 ---------- ---------- ---------- -GWASTCTSG REV-PMLRGS ENSP00000426070/1-862 LSNELARLAN IETEFKNDYR KLSMQCKDFV VGVLDLCRDT EEVEAILNGD ENSBTAP00000019490/1-868 LSNELARLAN IETEFKNDYR KLSMQCKDFV VGVLDLCRDT EEVEAILNGD BACU018541/1-866 LSNELARLAN IETEFKNDYR KLSMQCKDFV VGVLDLCRDT EEVEAILNGD ENSTTRP00000015427/1-861 LSNELARLAN IETEFKNDYR KLSMQCKDFV VGVLDLCRDT EEVEAILNGD 301 350 bmy_03835T0/1-584 LK-------- ----ELIKSC IAASHYSFVA HPNCQQQLLT MWYENLSGLR ENSP00000426070/1-862 VNFQVWSDHH RPSLSRIKLA IKYEVKKFVA HPNCQQQLLT MWYENLSGLR ENSBTAP00000019490/1-868 VNFQVWSDHH RPSLSRIKLA IKYEVKKFVA HPNCQQQLLT MWYENLSGLR BACU018541/1-866 VNFQVWSDHH RPSLSRIKLA IKYEVKKFVA HPNCQQQLLT MWYENLSGLR ENSTTRP00000015427/1-861 VNFQVWSDHH RPSLSRIKLA IKYEVKKFVA HPNCQQQLLT MWYENLSGLR 351 400 bmy_03835T0/1-584 QQSIAVKLLA VFGVSLGLPF LAIAYWIAPC SKFS------ ---------- ENSP00000426070/1-862 QQSIAVKFLA VFGVSIGLPF LAIAYWIAPC SKLGRTLRSP FMKFVAHAVS ENSBTAP00000019490/1-868 QQSIAVKFLA VFGVSLGLPF LAIAYWIAPC SKLGRTLRSP FMKFVAHAVS BACU018541/1-866 QQSIAVKLLA VFGVSLGLPF LAIAYWIAPC SKLGRTLRSP FMKFVAHAVS ENSTTRP00000015427/1-861 QQSIAVKFLA VFGVSLGLPF LAIAYWIAPC SKLGRTLRSP FMKFVAHAVS 401 450 bmy_03835T0/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000426070/1-862 FTIFLGLLVV NASDRFEGVK TLPNETFTDY PKQIFRVKTT QFSWTEMLIM ENSBTAP00000019490/1-868 FTIFLGLLVV NASDRFEGVK TLPNETFTDY PKQIFRVKTT QFSWTEMLIM BACU018541/1-866 FTIFLGLLVV NASDRFEGVK TLPNETFTDY PKQIFRVKTT QFSWTEMLIM ENSTTRP00000015427/1-861 FTIFLGLLVV NASDRFEGVK TLPNETFTDY PKQIFRVKTT QFSWTEMLIM 451 500 bmy_03835T0/1-584 ----GMIWSE CKEIWEEGPR EYVLHLWNLL DFGMLSIFVA SFTARFMAFL ENSP00000426070/1-862 KWVLGMIWSE CKEIWEEGPR EYVLHLWNLL DFGMLSIFVA SFTARFMAFL ENSBTAP00000019490/1-868 KWVLGMIWSE CKEIWEEGPR EYVLHLWNLL DFGMLSIFVA SFTARFMAFL BACU018541/1-866 KWVLGMIWSE CKEIWEEGPR EYVLHLWNLL DFGMLSIFVA SFTARFMAFL ENSTTRP00000015427/1-861 KWVLGMIWSE CKEIWEEGPR EYVLHLWNLL DFGMLSIFVA SFTARFMAFL 501 550 bmy_03835T0/1-584 KASEAQVYVD QHVQDDTLHN VSLPPEVAYF TYGESAGVRL RLPLRALPGR ENSP00000426070/1-862 KATEAQLYVD QHVQDDTLHN VSLPPEVAYF TY-------- ---------- ENSBTAP00000019490/1-868 KASEAQLYVD QHVQDDTLHN VSLPPEVAYF TY-------- ---------- BACU018541/1-866 KASEAQVYVD QHVQDDTLHN VSLPPEVAYF TY-------- ---------- ENSTTRP00000015427/1-861 KASEAQVYVD QHVQDDTLHN VSLPPEVAYF TY-------- ---------- 551 600 bmy_03835T0/1-584 GQGPNLISDV DPGAFPYILD PSRDKWWPSD PQIISEGLYA IAVVLSFSRI ENSP00000426070/1-862 ---------- ---------- -ARDKWWPSD PQIISEGLYA IAVVLSFSRI ENSBTAP00000019490/1-868 ---------- ---------- -ARDKWWPSD PQIISEGLYA IAVVLSFSRI BACU018541/1-866 ---------- ---------- -ARDKWWPSD PQIISEGLYA IAVVLSFSRI ENSTTRP00000015427/1-861 ---------- ---------- -ARDKWWPSD PQIISEGLYA IAVVLSFSRI 601 650 bmy_03835T0/1-584 AYILPANESF GPLQISLGRT VKDIFKFMVI FIMVFVAFMI GMFNLYSYYR ENSP00000426070/1-862 AYILPANESF GPLQISLGRT VKDIFKFMVI FIMVFVAFMI GMFNLYSYYR ENSBTAP00000019490/1-868 AYILPANESF GPLQISLGRT VKDIFKFMVI FIMVFVAFMI GMFNLYSYYR BACU018541/1-866 AYILPANESF GPLQISLGRT VKDIFKFMVI FIMVFVAFMI GMFNLYSYYR ENSTTRP00000015427/1-861 AYILPANESF GPLQISLGRT VKDIFKFMVI FIMVFVAFMI GMFNLYSYYR 651 700 bmy_03835T0/1-584 GAKYNPAFTT VEESFKTLFW SIFGLSEVIS VVLKYDHKFI ENIGYVLYGV ENSP00000426070/1-862 GAKYNPAFTT VEESFKTLFW SIFGLSEVIS VVLKYDHKFI ENIGYVLYGV ENSBTAP00000019490/1-868 GAKYNPAFTT VEESFKTLFW SIFGLSEVIS VVLKYDHKFI ENIGYVLYGV BACU018541/1-866 GAKYNPAFTT VEESFKTLFW SIFGLSEVIS VVLKYDHKFI ENIGYVLYGV ENSTTRP00000015427/1-861 GAKYNPAFTT VEESFKTLFW SIFGLSEVIS VVLKYDHKFI ENIGYVLYGV 701 750 bmy_03835T0/1-584 YNVTMVVVLL NMLIAMINNS YQEIE----- ---------- ---------- ENSP00000426070/1-862 YNVTMVVVLL NMLIAMINNS YQEIEEDADV EWKFARAKLW LSYFDEGRTL ENSBTAP00000019490/1-868 YNVTMVVVLL NMLIAMINNS YQEIEEDADV EWKFARAKLW LSYFDEGRTL BACU018541/1-866 YNVTMVVVLL NMLIAMINNS YQEIEEDADV EWKFARAKLW LSYFDEGRTL ENSTTRP00000015427/1-861 YNVTMVVVLL NMLIAMINNS YQEIEEDADV EWKFARAKLW LSYFDEGRTL 751 800 bmy_03835T0/1-584 ---------- ---------- ---------- ---------- ---------- ENSP00000426070/1-862 PAPFNLVPSP KSFYYLIMRI KMCLIKLCKS KAKSCENDLE MGMLNSKFK- ENSBTAP00000019490/1-868 PAPFNLVPSP KSFYYLIMRI KMCLIKLCKS KAKSCENDLE MGMLNSKFR- BACU018541/1-866 PAPFNLVPSP KSFYYLIMRI KMCLIKLCKS KAKSCENDLE MGMLNSKFRV ENSTTRP00000015427/1-861 PAPFNLVPSP KSFYYLIMRI KMCLIKLCKS KAKSCENDLE MGMLNSKFR- 801 850 bmy_03835T0/1-584 ---------- ---------- ----KTRYQA GMRNSENLTA NNTYSKPTRY ENSP00000426070/1-862 ---------- ---------- ----KTRYQA GMRNSENLTA NNTLSKPTRY ENSBTAP00000019490/1-868 ---------- ---------- ----KTRYQA GMRNSENLTA NNTYSKPTRY BACU018541/1-866 ACMYVPSCIM YYVLYIMCSL FFSQKTRYQA GMRNSENLTA NNTYSKPTRY ENSTTRP00000015427/1-861 ---------- ---------- ----KTRYQA GMRNSENLTA NNTYSKPTRY 851 900 bmy_03835T0/1-584 QVTTPFPESG ICIISGTSNV TRQCDNVGRV VRLQGSGELK EIKQDISSLR ENSP00000426070/1-862 QKIMKRLIKR YVL---KAQV DRENDEV--- ----NEGELK EIKQDISSLR ENSBTAP00000019490/1-868 QKIMKRLIKR YVL---KAQV DRENDEV--- ----NEGELK EIKQDISSLR BACU018541/1-866 QKIMKRLIKR YVL---KAQV DRENDEV--- ----NEGELK EIKQDISSLR ENSTTRP00000015427/1-861 QKIMKRLIKR YVL---KAQV DRENDEV--- ----NEGELK EIKQDISSLR 901 950 bmy_03835T0/1-584 YELLEEKSQA TGELADLIQQ LSEKFGRNLN KDHLRVNKGK DI ENSP00000426070/1-862 YELLEEKSQA TGELADLIQQ LSEKFGKNLN KDHLRVNKGK DI ENSBTAP00000019490/1-868 YELLEEKSQA TGELADLIQQ LSEKFGKNLN KDHLRVNKGK DI BACU018541/1-866 YELLEEKSQA TRELADLIQQ LSEKFGRNLN KD-------- -- ENSTTRP00000015427/1-861 YELLEEKSQA TGELADLIQQ LSEKFGKNLN KDHLRANKGK DI