KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:08 2014 Check: 00 .. Name: ENSTTRP00000014369/1-546 Len: 1119 Check: 1814 Weight: 1.00 Name: ENSP00000401508/1-538 Len: 1119 Check: 3723 Weight: 1.00 Name: ENSBTAP00000019496/1-538 Len: 1119 Check: 3082 Weight: 1.00 Name: bmy_07602T0/1-890 Len: 1119 Check: 6134 Weight: 1.00 Name: BACU001481/1-952 Len: 1119 Check: 4570 Weight: 1.00 // 1 50 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019496/1-538 ---------- ---------- ---------- ---------- ---------- bmy_07602T0/1-890 ---------- ---------- ---------- ---------- ---------- BACU001481/1-952 MRSRKASCAL ETVWEDKQKY GEAERRFYEH EAMRAAAQQP PAEALAVNGP 51 100 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019496/1-538 ---------- ---------- ---------- ---------- ---------- bmy_07602T0/1-890 ---------- ---------- ---------- ---------- ---------- BACU001481/1-952 GREEEAEEGA AGNGNGNGNG NGSGSGSSEP GKSHNGKKPL QKPRKRSPKG 101 150 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019496/1-538 ---------- ---------- ---------- ---------- ---------- bmy_07602T0/1-890 ---------- ---------- ---------- ---------- ---------- BACU001481/1-952 WLSQADLALV GLSADHVWLD KPLFDQAESS YHQRLADAAA QAAQPPALAP 151 200 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019496/1-538 ---------- ---------- ---------- ---------- ---------- bmy_07602T0/1-890 ---------- ---------- ---------- ---------- ---------- BACU001481/1-952 GALCAHGSQD AEAPWLSKPA YDSAECRHHA AEALRMAWRL EAPSLVHRPS 201 250 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019496/1-538 ---------- ---------- ---------- ---------- ---------- bmy_07602T0/1-890 ---------- ----MATNFL VHEKIWFDKF KYDEAERKFY EQMNGPVAGS BACU001481/1-952 ARSGPSMSSL RPKKMATNFL VHEKIWFDKF KYDDAERKFY EQMNGPVAGS 251 300 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019496/1-538 ---------- ---------- ---------- ---------- ---------- bmy_07602T0/1-890 SRQENGASVI LRDIARAREN IQKSLAGSSG PGASSGPGGD PSELVIRIAS BACU001481/1-952 SRQENGASVI LRDIARAREN IQKSLAGSSG PGASSGPGGD PSELVIRIAS 301 350 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019496/1-538 ---------- ---------- ---------- ---------- ---------- bmy_07602T0/1-890 LEVENQSLRG VVQDLQQAVS KLEARLSALE KSSPAHRATA PQTQHVSPMR BACU001481/1-952 LEVENQSLRG VVQDLQQAVS KLEARLSALE KSLPAHRATA PQTQHVSPMR 351 400 ENSTTRP00000014369/1-546 ---------- ---------- ---------- ---------- ---------- ENSP00000401508/1-538 ---------- MAAEQDPEA- ---------- ---------- -------RAA ENSBTAP00000019496/1-538 ---------- MAAEQDPEG- ---------- ---------- -------RAA bmy_07602T0/1-890 QVEPPARKVA TATEDDEDDD IDLFGSDEEE DKEAARLREE RLRQYAERKA BACU001481/1-952 QVEPPARKVA TATEDDEDDD IDLFGSDEEG DKEAARLREE RLRQYAERKA 401 450 ENSTTRP00000014369/1-546 ----L----- ---------- -TDL-QAT-- ---------- ------MALG ENSP00000401508/1-538 ARPLL----- ---------- -TDLYQAT-- ---------- ------MALG ENSBTAP00000019496/1-538 ARPLL----- ---------- -TDLYQAT-- ---------- ------MALG bmy_07602T0/1-890 KKPALVAKSS ILLDVKPWDD ETDMAQLEAC VRSVQLDGLT WGCSKLVPVG BACU001481/1-952 KKPAPVAKSS ILLDVKPWDD ETDMAQLEAC VRSVQLDGLT WGGSKLMPVG 451 500 ENSTTRP00000014369/1-546 Y--------- ---------- --------WR ADRAQE---- ---------- ENSP00000401508/1-538 Y--------- ---------- --------WR AGRARD---- ---------- ENSBTAP00000019496/1-538 Y--------- ---------- --------WR AGRAQD---- ---------- bmy_07602T0/1-890 YGIHKLQIQC VVEDDKVGTD LLEEEITKFE EHRASGGQRP ALTVLVARKG BACU001481/1-952 YGIHKLQIQC VVEDDKVGTD LLEEEITKFE EHVSEG---- ---------- 501 550 ENSTTRP00000014369/1-546 ---------- ---------- ---------- --AAEFEL-F RRCPFGGAFA ENSP00000401508/1-538 ---------- ---------- ---------- --AAEFELFF RRCPFGGAFA ENSBTAP00000019496/1-538 ---------- ---------- ---------- --QAEFELFF RQCPFGGAFA bmy_07602T0/1-890 GGSTVSQPAG GAGPGQRGVT RAGRLESRAP GQRPESDLFF RRCPFGGAFA BACU001481/1-952 ---------- ---------- ---------- ---PIQDVQF ---------- 551 600 ENSTTRP00000014369/1-546 LAAGLRDCVR FVRDFRLTDA DVQFLAS--V LPP------- --------DT ENSP00000401508/1-538 LAAGLRDCVR FLRAFRLRDA DVQFLAS--V LPP------- --------DT ENSBTAP00000019496/1-538 LAAGLRDCVR FLRAFRLRDA DVQFLAS--A LPP------- --------DT bmy_07602T0/1-890 LAAGLRDCVR FVRAFRLRDA GSPAPGSPRA RPPRRALAHH GLCRPQTCNT BACU001481/1-952 ---------- ---------- ----LAS--V LPP------- --------DT 601 650 ENSTTRP00000014369/1-546 DPAFFQHLRA LDCSGVTVRA LPEGSLAFPS VPL------- LQVSGP---- ENSP00000401508/1-538 DPAFFEHLRA LDCSEVTVRA LPEGSLAFPG VPL------- LQVSGP---- ENSBTAP00000019496/1-538 DPAFFEHLRA LDCSGVTVRA LPEGSLAFPG VPL------- LQVSGP---- bmy_07602T0/1-890 DPAFFQHLRA LDCSGVTVRA LPEGSLAFPG VSAGGAGHGG WARAGPGGAE BACU001481/1-952 DPAFFQHLRA LDCSGVTVRA LPEGSLAFPG VPL------- LQVSGP---- 651 700 ENSTTRP00000014369/1-546 LLVVQLLETP LLCLVSYASL VATNAARL-- ---------R LIAGPEKRLL ENSP00000401508/1-538 LLVVQLLETP LLCLVSYASL VATNAARL-- ---------R LIAGPEKRLL ENSBTAP00000019496/1-538 LLVVQLLETP LLCLVSYASL IATNAARL-- ---------R LIAGPDKRLL bmy_07602T0/1-890 LTARPAGAAA AGVRAAPGGA AAGDAAPLPG QLRQPHRHER RAASPDRRAG BACU001481/1-952 LLVVQLLETP LLCLVSYASL IATNAARL-- ---------R LIAGPEKRLL 701 750 ENSTTRP00000014369/1-546 ELGLRRAQGP DGGLTASTYS YLGGFDGSSN MLAGQLRGVP VAGTLAHSFI ENSP00000401508/1-538 EMGLRRAQGP DGGLTASTYS YLGGFDSSSN VLAGQLRGVP VAGTLAHSFV ENSBTAP00000019496/1-538 EMGLRRAQGP DGGLTASTYS YLGGFDASSN VLAGQLRGVP VAGTLAHSFV bmy_07602T0/1-890 EXAAGAGASA GSGPRRGSYR LYLQLLGRSN MLAGQLRGVP VAGTLAHSFI BACU001481/1-952 ELGLRRAQGP DGGLTASTYS YLGGFDGSSN MLAGQLRGVP VAGTLAHSFI 751 800 ENSTTRP00000014369/1-546 TSFSGTEVPP EPXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000401508/1-538 TSFSGSEVPP DPMLAPAAGE GPGVDLAAKA QVWLEQVCAH LGLGVQEPHP ENSBTAP00000019496/1-538 TSFSGSEVPP DPMLAPAAGQ GSQVDLAASV EMWLERVCGH LGLGVQEPHR bmy_07602T0/1-890 TSFSGTEVPP DPMLAPAAGQ GPRVDLAARV ETWLERVCGH LGLGVQEPHR BACU001481/1-952 TSFSGTEVPP DPMLAPAAGQ GPRVDLASRV ETWLGRVCGH LGLGVQQPHR 801 850 ENSTTRP00000014369/1-546 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXLAVALA LEELGYQAVY ENSP00000401508/1-538 GERAAFVAYA LAFPRAFQGL LDTYSVWRSG LPNFLAVALA LGELGYRAVG ENSBTAP00000019496/1-538 GERAAFVAYA LAFPRAFQGL LDTYSVRRSG LPNFLAVALA LQELGYQAVG bmy_07602T0/1-890 GERAAFVAYA LAFPRAFQGL LDTYSVQRSG LPNFLAVALA LEELGYQAVG BACU001481/1-952 GERAAFVAYA LAFPRAFQGL LDTYSVRRSG LPNFLAVALA LEELGYQAVG 851 900 ENSTTRP00000014369/1-546 LRLDSGDLLQ QAQEARGVFR TVAAQFRVPW LESIPIAVSN NIDEQELARL ENSP00000401508/1-538 VRLDSGDLLQ QAQEIRKVFR AAAAQFQVPW LESVLIVVSN NIDEEALARL ENSBTAP00000019496/1-538 VRLDSGDLLQ QAREIRGVFW TAAAQFGVPW LQSVPIAVSN NIDEEELARL bmy_07602T0/1-890 VRLDSGDLLQ QAQETRGVFR TVAAQFRVPW LESIPIAVSN NIDEEELARL BACU001481/1-952 VRLDSGDLLQ QAQETRGVFR TVAAQFRVPW LESIPIAVSN NIDEEELARL 901 950 ENSTTRP00000014369/1-546 SQKGSEVNVI GIGTSVVTCP RQPSLGCVYK LVSVGGQPRM KLTEDPEKQT ENSP00000401508/1-538 AQEGSEVNVI GIGTSVVTCP QQPSLGGVYK LVAVGGQPRM KLTEDPEKQT ENSBTAP00000019496/1-538 AQKGSEVNVI GIGTSVVTCP RQPSLGCVYK LVSVGGQPRM KLTEDPEKQT bmy_07602T0/1-890 AQKGSEVNVI GIGTSVVTCP RQPSLGCVYK LVSVGGQPRM KLTEDPEKQT BACU001481/1-952 AQKGSEVNVI GIGTSVVTCP RQPSLGCVYK LVSVGGQPRM KLTEDPEKQT 951 1000 ENSTTRP00000014369/1-546 LPGSKAAFRL LGSD------ ---------- ----GALLLD VLQLAEEPPP ENSP00000401508/1-538 LPGSKAAFRL LGSD------ ---------- ----GSPLMD MLQLAEEPVP ENSBTAP00000019496/1-538 LPGSKAAFRL LGSD------ ---------- ----GSLLLD VLQLAEEPPP bmy_07602T0/1-890 LPGSKAAFRL LGSDVQLKAP GPVHAWRPHM RTHTGALLLD VLQLAEEPPP BACU001481/1-952 LPGSKAAFRL LGSD------ ---------- ----GALLLD VLQLAEEPPP 1001 1050 ENSTTRP00000014369/1-546 QAGQELRVWP RGTQESCTVR PVHVEPLLRL WVQQGQLCEP LPSLAESRAF ENSP00000401508/1-538 QAGQELRVWP PGAQEPCTVR PAQVEPLLRL CLQQGQLCEP LPSLAESRAL ENSBTAP00000019496/1-538 QADQELRVWP RGARESRTVR PAHVEPLLRL WVQQGQLCEP LPSLAESRAF bmy_07602T0/1-890 QAGQELRVWP RGTQESCTVR PAHVEPLLRL WVQQGQLCEP LPSLAESRAF BACU001481/1-952 QAGQELRVWP RGTQESCTVR PAHVEPLLRL WVQQGQLCEP LPSLAESRAF 1051 1100 ENSTTRP00000014369/1-546 AQQSLSRMSP AHRWLEQPAL YQVGGPHHQP APALSPPTAT HGPPLSSLQV ENSP00000401508/1-538 AQLSLSRLSP EHRRLRSPAQ YQV------- ---------- ---------- ENSBTAP00000019496/1-538 AQQSLHRLSP AHRRLEQPAL YQV------- ---------- ---------- bmy_07602T0/1-890 AQQSLSRLSP AHRRLEQPAL YQVGVGPTSS TRPVP----- ---------- BACU001481/1-952 AQRSLSRLSP AHRRLEQPAL YQV------- ---------- ---------- 1101 1150 ENSTTRP00000014369/1-546 ALSEKLRALV DRLSA-EVL ENSP00000401508/1-538 VLSERLQALV NSLCAGQSP ENSBTAP00000019496/1-538 ALSEKLQALV DRLSARGAL bmy_07602T0/1-890 SLPPRPPIVP PLLPAGGAV BACU001481/1-952 ALSEKLRALV DRLSARGAL