KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:08:08 2014 Check: 00 .. Name: ENSTTRP00000013853/1-413 Len: 588 Check: 8231 Weight: 1.00 Name: ENSP00000455229/1-493 Len: 588 Check: 4499 Weight: 1.00 Name: bmy_05342T0/1-528 Len: 588 Check: 8623 Weight: 1.00 Name: ENSBTAP00000019500/1-493 Len: 588 Check: 3085 Weight: 1.00 // 1 50 ENSTTRP00000013853/1-413 -MIVNSLSLC YHNKLILAPM VRVGTLPMRL LALDYGADIV YCEELIDLKM ENSP00000455229/1-493 -MILNSLSLC YHNKLILAPM VRVGTLPMRL LALDYGADIV YCEELIDLKM bmy_05342T0/1-528 MKVFPTMSRT YVSRTDMCPL IPL------- ---------- --QELIDLKM ENSBTAP00000019500/1-493 -MTVNNLSLC YHNKLILAPM VRVGTLPMRL LALDYGADIV YCEELVDLKM 51 100 ENSTTRP00000013853/1-413 LQCKRVVNXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000455229/1-493 IQCKRVVNEV LSTVDFVAPD DRVVFRTCER EQNRVVFQMG TSDAERALAV bmy_05342T0/1-528 LQCKRVVNEV LSTVDFVAPD DRVVFRTCER EQSRVVFQMG TSDAERALAV ENSBTAP00000019500/1-493 LQCKRVVNEA LSTVDFVAPD DRVVFRTCER EQSKVVFQMG TSDAERALAV 101 150 ENSTTRP00000013853/1-413 XXXXENDVAG IDVNMGCPKE YSTK-GIGAA LLSXXXXXXX ILSTLVKGTQ ENSP00000455229/1-493 ARLVENDVAG IDVNMGCPKQ YSTKGGMGAA LLSDPDKIEK ILSTLVKGTR bmy_05342T0/1-528 ARLVENDVAG ID-------- ----GGMGAA LLSDPDKIEK ILSTLVKGTQ ENSBTAP00000019500/1-493 ARLVENDVAG IDVNMGCPKE YSTKGGMGAA LLSDPDKIEK ILSTLVKGTR 151 200 ENSTTRP00000013853/1-413 RPVTCKIRIL PSLEDTLSLV KRIERTGIAA IAVHGRKREE RPQHPVSCEA ENSP00000455229/1-493 RPVTCKIRIL PSLEDTLSLV KRIERTGIAA IAVHGRKREE RPQHPVSCEV bmy_05342T0/1-528 RPVTCKIRIL PSLEDTLSLV KRIERTGIAA IAVHG----- ---------- ENSBTAP00000019500/1-493 RPVTCKIRIL PSLEDTLSLV KRIERTGIAA IAVHGRKREE RPQHPVSCEA 201 250 ENSTTRP00000013853/1-413 IKAVAETLSI PVIANGGSHD HIQGYLDIED FRQATAASSV MVARAAMWNP ENSP00000455229/1-493 IKAIADTLSI PVIANGGSHD HIQQYSDIED FRQATAASSV MVARAAMWNP bmy_05342T0/1-528 ---------- ----SGGSHD HIQGYLDIED FRQATAASSV MVARAAMWNP ENSBTAP00000019500/1-493 IKAIAETLSI PVIANGGSHD HIQGYLDIED FRRATAASSV MVARAAMWNP 251 300 ENSTTRP00000013853/1-413 SIFLKEGPRP LEEVMQKYIR YAVQYDNHYT NTKYCLCQML REHLESPQGR ENSP00000455229/1-493 SIFLKEGLRP LEEVMQKYIR YAVQYDNHYT NTKYCLCQML REQLESPQGR bmy_05342T0/1-528 SVFLKEGPRP LEEVMQKYIR YAVQYDNHYT NTKYCLCQML REQLESPQGR ENSBTAP00000019500/1-493 SIFLKEGPRP LEEVMQKYIR YAVQYDNHYT NTKYCLCQML REQLESPQGR 301 350 ENSTTRP00000013853/1-413 LLHAAQSSQE ICEAFGLGAF YEETTRELDA RRGKLLARSP EEVEEPAEDT ENSP00000455229/1-493 LLHAAQSSRE ICEAFGLGAF YEETTQELDA QQARLSAKTS EQTGEPAEDT bmy_05342T0/1-528 LLHAAQSSQE ICEAFGLGAF CEETTRELDA RRAKLLARSP EEVEEPAEDT ENSBTAP00000019500/1-493 LLHAAQSSQE ICEAFGLGAF YEETTRELDA RRAKLLARSP EEAEEPAEDT 351 400 ENSTTRP00000013853/1-413 SGIIKMAVKF DRRAYSPQIT PKMCLLEWCR REKLAQPVYE TVQRPLDRLF ENSP00000455229/1-493 SGVIKMAVKF DRRAYPAQIT PKMCLLEWCR REKLAQPVYE TVQRPLDRLF bmy_05342T0/1-528 SGIIKMAVKF DRRAYSPQIT PKMCLLEWCR REKLAQPVYE TVQRPLDRLF ENSBTAP00000019500/1-493 SGIIKMAIKF DRRAYSPQIT PKMCLLEWCR REKLAQPVYE TVQRPLDRLF 401 450 ENSTTRP00000013853/1-413 CSVVTVAEQK YQSTL----- ---------- ---------- ---------- ENSP00000455229/1-493 SSIVTVAEQK YQSTLWDKSK KLAEQAAAIV CLRSQGLPEG RLGEESPSLH bmy_05342T0/1-528 CSVVTVAEQK YQSTLWDKSK KLAEQAAAIV CLRSQGLPEG RLGEEGPSLH ENSBTAP00000019500/1-493 CSVVTVAEQK YQSTLWDKSK KLAEQAAAIV CLRSQGLPEG RLGEESPSLH 451 500 ENSTTRP00000013853/1-413 ---------- ---------- ---------- ---------- ---------- ENSP00000455229/1-493 KRKREAPDQD PGGPRAQELA QPGDLCKKPF VALGSGEESP LEG------- bmy_05342T0/1-528 KRKREAPDQD TGDPRAQEPA MPGELCKKPF LALASGKESP LEGCEKQTNS ENSBTAP00000019500/1-493 KRKREALDQD PGDPRTQEPA MPGELCKKPF VALASGQESP LEG------- 501 550 ENSTTRP00000013853/1-413 ---------- ---------- ---------- ---------- ---------- ENSP00000455229/1-493 ---------- --W------- ---------- ---------- ---------- bmy_05342T0/1-528 YCILWGLPHP AYWEGRSDQR SLPSTASASS AVNMLLFLPF SKLFKMPPLP ENSBTAP00000019500/1-493 ---------- --W------- ---------- ---------- ---------- 551 600 ENSTTRP00000013853/1-413 ---------- ---------- ---------- -------- ENSP00000455229/1-493 ---------- ---------- ---------- -------- bmy_05342T0/1-528 FLIPQLEQDR QRGPSGPLRH PELVRTCGRT LCGPGTKS ENSBTAP00000019500/1-493 ---------- ---------- ---------- --------