KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:09 2014 Check: 00 .. Name: ENSTTRP00000006226/1-1001 Len: 1157 Check: 9522 Weight: 1.00 Name: ENSBTAP00000019501/1-1040 Len: 1157 Check: 7271 Weight: 1.00 Name: ENSP00000330633/1-1040 Len: 1157 Check: 6802 Weight: 1.00 Name: bmy_02394T0/1-1124 Len: 1157 Check: 4411 Weight: 1.00 Name: BACU009867/1-1044 Len: 1157 Check: 3316 Weight: 1.00 // 1 50 ENSTTRP00000006226/1-1001 ---------- --MGTPARRK SHLLMLAAVA LVSTP--AWS SAWGSPATFG ENSBTAP00000019501/1-1040 ---------- --MGTPLGRK AHLLMLVAVA LVSTP--AWS SAWGSPATFG ENSP00000330633/1-1040 ---------- --MGTATRRK PHLLLVAAVA LVSSS--AWS SALGSQTTFG bmy_02394T0/1-1124 ---------- --MGTPTRRK SHLLMLATVA LVSTP----- ---------- BACU009867/1-1044 MEPFRHCRKF YWTALPWRPG SSWPLGPETS GGSPPSAAWS SAWGSPATFG 51 100 ENSTTRP00000006226/1-1001 PVFEDQPLGL LFPEESTEEK VTLACRARAS PPATYRWKMN GTEMKLEPGS ENSBTAP00000019501/1-1040 PVFEEQPLGL LFPEESTEEK VTLACRARAS PPATYRWKMN GTEMKLEPGS ENSP00000330633/1-1040 PVFEDQPLSV LFPEESTEEQ VLLACRARAS PPATYRWKMN GTEMKLEPGS bmy_02394T0/1-1124 ----DQPFGL LFPEESTEEK VTLACRARAS PPATYRWKMN GTEMKLEPGS BACU009867/1-1044 PVFEDQPLGL LFPEESTEEK VTLACRARAS PPATYRWKMN GTEMKLEPGS 101 150 ENSTTRP00000006226/1-1001 RHQLVGGNLV IMNPTKAQDA GVYQCLASNP VGTVVSREAV LRFGFLQEFS ENSBTAP00000019501/1-1040 RQQLVGGNLV IMNPSKAQDA GVYQCLASNP VGTVVSREAV LRFGFLQEFS ENSP00000330633/1-1040 RHQLVGGNLV IMNPTKAQDA GVYQCLASNP VGTVVSREAI LRFGFLQEFS bmy_02394T0/1-1124 RHQLVGGNLV IMNPTKAQDA GVYQCLASNP VGTVVSREAV LRFGFLQEFS BACU009867/1-1044 RHKLVGGNLV IMNPTKAQDA GVYQCLASNP VGTVVSREAV LRFGFLQEFS 151 200 ENSTTRP00000006226/1-1001 KEERDPVKTH EGWGVMLPCN PPAHYPGLSY RWLLNEFPNF IPTDGRHFVS ENSBTAP00000019501/1-1040 KEERDPVKTH EGWGVMLPCN PPAHYPGLSY RWLLNEFPNF IPTDGRHFVS ENSP00000330633/1-1040 KEERDPVKAH EGWGVMLPCN PPAHYPGLSY RWLLNEFPNF IPTDGRHFVS bmy_02394T0/1-1124 KEERDPVKTH EGWGVMLPCN PPAHYPGLSY RWLLNEFPNF IPTDGRHFVS BACU009867/1-1044 KEERDPVKTH EGWGVMLPCN PPAHYPGLSY RWLLNEFPNF IPTDGRHFVS 201 250 ENSTTRP00000006226/1-1001 QTTGNLYIAR TNASDLGNYS CLATSHMDFS TKSVFSKFAQ LNLAAEDTRL ENSBTAP00000019501/1-1040 QTTGNLYIAR TNASDLGNYS CLATSHMDFS TKSVFSKFAQ LNLAAEDTRL ENSP00000330633/1-1040 QTTGNLYIAR TNASDLGNYS CLATSHMDFS TKSVFSKFAQ LNLAAEDTRL bmy_02394T0/1-1124 QTTGNLYIAR TNASDLGNYS CLATSHMDFS TKSVFSKFAQ LNLAAEDTRL BACU009867/1-1044 QTTGNLYIAR TNASDLGNYS CLATSHMDFS TKSVFSKFAQ LNLAAEDTRL 251 300 ENSTTRP00000006226/1-1001 FAPSIKARFP AETYALVGQQ VTLECFAFGN P-PQIK-RKV DGSLSPXXXX ENSBTAP00000019501/1-1040 FAPSIKARFP AETYALVGQQ VTLECFAFGN PVPRIKWRKV DGSLSPQWAT ENSP00000330633/1-1040 FAPSIKARFP AETYALVGQQ VTLECFAFGN PVPRIKWRKV DGSLSPQWTT bmy_02394T0/1-1124 FAPSIKARFP AETYALVGQQ VTLECFAFGN PVPRIKWRKV DGSLSPQWAT BACU009867/1-1044 FAPSIKARFP AETYALVGQQ VTLECFAFG- ---KIKWRKV DGSLSPQWAT 301 350 ENSTTRP00000006226/1-1001 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000019501/1-1040 AEPTLQIPSV GFEDEGTYEC EAENTKGRDT VQGRIIVQAQ PEWLRVISDR ENSP00000330633/1-1040 AEPTLQIPSV SFEDEGTYEC EAENSKGRDT VQGRIIVQAQ PEWLKVISDT bmy_02394T0/1-1124 AEPTLQIPSV GFEDEGTYEC EAENSKGRDT VQGRIIVQAQ PEWLKVISDM BACU009867/1-1044 AEPTLQIPSV GFEDEGTYEC EAENSKGRDT VQGRIIVQAQ PEWLKVISDM 351 400 ENSTTRP00000006226/1-1001 XXXXXXXXXX XXAAAGNPRP TVRWLRDGDP LASQARVEVL AGDLRFSKLS ENSBTAP00000019501/1-1040 EADIGSDLHW ACAAAGKPRP AVRWLRNGEP LTSQARVEVL AGDLRFSKLS ENSP00000330633/1-1040 EADIGSNLRW GCAAAGKPRP TVRWLRNGEP LASQNRVEVL AGDLRFSKLS bmy_02394T0/1-1124 EADIGSNLHW ECAAAGKPRP TVRWLRDGDP LASQARVEVL AGDLRFSKLR BACU009867/1-1044 EADIGSNLHW ECAAAGKPRP TVRWLRDGDP LASQARVEVL AGDLRFSKLS 401 450 ENSTTRP00000006226/1-1001 LEDSGMYQCV AENKHGTIYA SAELAVQALA PDFRLNPVRR LIPAARGGEI ENSBTAP00000019501/1-1040 LEDSGMYQCV AENKHGTIYA SAELAVQALA PDFRLNPVRR LIPAARGGEV ENSP00000330633/1-1040 LEDSGMYQCV AENKHGTIYA SAELAVQALA PDFRLNPVRR LIPAARGGEI bmy_02394T0/1-1124 LEDSGMYQCV AENKHGTIYA SAELAVQALA PDFRLNPVRR LIPAARGGEI BACU009867/1-1044 LEDSGMYQCV AENKHGTIYA SAELAVQALA PDFRLNPVRR LIPAARGGEI 451 500 ENSTTRP00000006226/1-1001 VIPCQPRAAP KAVVLWSKGT EILVNSSRVT VTPDGTLIIR NISRSDEGKY ENSBTAP00000019501/1-1040 VIPCQPRAAP KAVVLWSKGT EILVNSSRVT VTPDGTLIIR NVSRSDEGKY ENSP00000330633/1-1040 LIPCQPRAAP KAVVLWSKGT EILVNSSRVT VTPDGTLIIR NISRSDEGKY bmy_02394T0/1-1124 VIPCQPRAAP KAVVLWSKGT EILVNSSRVT VTPDGTLILR NISRSDEGKY BACU009867/1-1044 VIPCQPRAAP KAVVLWSKGT EILVNSSRVT VTPDGTLIIR NISRSDEGKY 501 550 ENSTTRP00000006226/1-1001 TCFAENFMGK ANSTGILSVR DATKITLAPS SADINLGDNL TLQCHAYHDP ENSBTAP00000019501/1-1040 TCFAENFMGK ANSTGTLSVR DATKITLAPS SADINLGDNL TLQCHASHDP ENSP00000330633/1-1040 TCFAENFMGK ANSTGILSVR DATKITLAPS SADINLGDNL TLQCHASHDP bmy_02394T0/1-1124 TCFAENFMGK ANSTGILSVR DATKITLAPS SADINSGDNL TLQCHASHDP BACU009867/1-1044 TCFAENFMGK ANSTGILSVR DATKITLAPS SADINSGDNL TLQCHASHDP 551 600 ENSTTRP00000006226/1-1001 TMDLTFIWTL DDFPIDFDKP LGHYRRASLK ETVGDLTILN AQLRHGGKYT ENSBTAP00000019501/1-1040 TMDLTFVWTL DDFPIDFDKP GGHYQRASVK ETVGDLTILN AQLRHGGKYT ENSP00000330633/1-1040 TMDLTFTWTL DDFPIDFDKP GGHYRRTNVK ETIGDLTILN AQLRHGGKYT bmy_02394T0/1-1124 TMDLTFIWTL DDFPIDFDKP GGHYRRASVK ETVGDLTILN AQLRHGGKYT BACU009867/1-1044 TMDLTFIWTL DDFPIDFDKP GGHYRRASVK ETVGDLTILN AQLRHGGKYT 601 650 ENSTTRP00000006226/1-1001 CMAQTVVDSA SKEATVLVRG PPGPPGGVVV RDIGDTTVQL SWSRGFDNHS ENSBTAP00000019501/1-1040 CTAQTVVDSA SKEATVLVRG PPGAPGGVVV RDISDTSVQL SWSRGFDNHS ENSP00000330633/1-1040 CMAQTVVDSA SKEATVLVRG PPGPPGGVVV RDIGDTTIQL SWSRGFDNHS bmy_02394T0/1-1124 CMAQTVVDSA SKEATVLVRG PPGPPGGVVV RDIGDTTVQL SWSRGFDNHS BACU009867/1-1044 CMAQTVVDSA SKEATVLVRG PPGPPGGVVV RDIGDTTVQL SWSRGFDNHS 651 700 ENSTTRP00000006226/1-1001 PIAKYTLQAR TLPAGKWKQV RTNPANIEGN AETAQVLGLT PWMDYEFRVL ENSBTAP00000019501/1-1040 PIAKYTLQAR TLPSGKWKQV RTNPTNIEGN AETAQVLGLT PWMDYEFRVL ENSP00000330633/1-1040 PIAKYTLQAR TPPAGKWKQV RTNPANIEGN AETAQVLGLT PWMDYEFRVI bmy_02394T0/1-1124 PIAKYTLQAR TLPAGKWKQV RTNPANIEGN AETAQVLGLT PWMDYEFRVS BACU009867/1-1044 PIAKFTLQAR TLPAGKWKQV RTNPTNIEGN AETAQVLGLT PWMDYEFRVS 701 750 ENSTTRP00000006226/1-1001 ASNILGTGEP SGPSSNIRTK EAAPSVAPSG LRGGGGAPGE LIVNWT---- ENSBTAP00000019501/1-1040 ASNILGTGEP SGPSSKIQTK EAAPSVAPSG LSGGGGAPGE LTVTWT---- ENSP00000330633/1-1040 ASNILGTGEP SGPSSKIRTR EAAPSVAPSG LSGGGGAPGE LIVNWT---- bmy_02394T0/1-1124 ASNILGTGEP SGPSSKIRTK EAAPSVAPSG LRGGGGAPGE LIVNWTVSCK BACU009867/1-1044 ASNILGTGEP SGPSSKIRTK EAAPSVAPSG LRGGGGAPGE LIVNWT---- 751 800 ENSTTRP00000006226/1-1001 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019501/1-1040 ---------- ---------- ---------- ---------- ---------- ENSP00000330633/1-1040 ---------- ---------- ---------- ---------- ---------- bmy_02394T0/1-1124 DRGRTMPPVL WGNKFYPTLT PTCTWWDSYQ ELSGMQRGPR QSHCTVLTPE BACU009867/1-1044 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000006226/1-1001 ---------- ---------- ---------- ---------- ------XXXX ENSBTAP00000019501/1-1040 ---------- ---------- ---------- ---------- -------PMS ENSP00000330633/1-1040 ---------- ---------- ---------- ---------- -------PMS bmy_02394T0/1-1124 QTRSLPSPGW NHRSPGATPL GEGWVGLEDG QGNAAAAPRP RHALAPQPMS BACU009867/1-1044 ---------- ---------- ---------- ---------- -------PMS 851 900 ENSTTRP00000006226/1-1001 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000019501/1-1040 REYQHGGGFG YLVSFRRQGG TSWQTARVPG ADAQYFVYSN DSIRPYTPFE ENSP00000330633/1-1040 REYQNGDGFG YLLSFRRQGS THWQTARVPG ADAQYFVYSN ESVRPYTPFE bmy_02394T0/1-1124 REYQNGDGFG YLLSFRRQGS TSWQTARVPG ADAQYFVYSN ESVRPYTPFE BACU009867/1-1044 REYQNGDGFG YLLSFRRQGS TSWQTARVPG ADAQYFVYSN ESVRPYTPFE 901 950 ENSTTRP00000006226/1-1001 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXSWEP ENSBTAP00000019501/1-1040 VKIRSYNRRG DGPESLVAVV YSAEEEPRVA PPKVWAKAVS SSEMNVSWEP ENSP00000330633/1-1040 VKIRSYNRRG DGPESLTALV YSAEEEPRVA PTKVWAKGVS SSEMNVTWEP bmy_02394T0/1-1124 VKIRSYNHRG DGPESLTAIV YSAEEEPRVA PTKVWAKGVS SSEMNVTWEP BACU009867/1-1044 VKIRSYNHRG DGPESLTAIV YSAEEEPRVA PTKVWAKGVS SSEMNVTWEP 951 1000 ENSTTRP00000006226/1-1001 VRQDMNGILL GYEI--YKAG DKEAAADRVR TAGLDTSALV TGLHYNTKYH ENSBTAP00000019501/1-1040 VQQDMNGILL GYEIRYWKAG AKAAAAERVR TAGLDTSALV TGLHASTKYH ENSP00000330633/1-1040 VQQDMNGILL GYEIRYWKAG DKEAAADRVR TAGLDTSARV SGLHPNTKYH bmy_02394T0/1-1124 VRQDMNGILL GYEIRYWKAG DKEAAADRVR TAGLDTSALV TGLHYNTKYH BACU009867/1-1044 VRQDMNGILL GYEIRYWKAG DKEAAADRVR TAGLDTSALV TGLHYNTKYH 1001 1050 ENSTTRP00000006226/1-1001 VTVRAYNRAG TGPASPSANA TTVKPPPRRP PGNISWTFSS SSLSIKWDPV ENSBTAP00000019501/1-1040 VTVRAYNRAG TGPASPSANA TTMKPPPRRP PGNISWTFSS SSLSIKWDPV ENSP00000330633/1-1040 VTVRAYNRAG TGPASPSANA TTMKPPPRRP PGNISWTFSS SSLSIKWDPV bmy_02394T0/1-1124 VTVRAYNRAG TGPASPSANA TTVKPPPRRP PGNISWTFSS SSLSIKWDPV BACU009867/1-1044 VTVRAYNRAG TGPASPSANA TTVKPPPRRP PGNISWTFSS SSLSIKWDPV 1051 1100 ENSTTRP00000006226/1-1001 VPLRNESAVT GYKMLYQNDL HPTPTLHLTS KNWIEIAVPE DIGHALVQIR ENSBTAP00000019501/1-1040 VPLGNESAVT GYKMLYQNDL HPTPTLHLTS KNWIEITVPE DIGHALVQIR ENSP00000330633/1-1040 VPFRNESAVT GYKMLYQNDL HLTPTLHLTG KNWIEIPVPE DIGHALVQIR bmy_02394T0/1-1124 VPLRNESAVT GYKMLYQNDL HPTPTLHLTS KNWIEIAVPE DIGHALVQIR BACU009867/1-1044 VPLRNESAVT GYKMLYQNDL HPTPTLHLTS KNWIEIAAPE DIGHALVQIR 1101 1150 ENSTTRP00000006226/1-1001 TTGPGGDGVP AEVHIVRNG- ---------- ---------- ---------- ENSBTAP00000019501/1-1040 TTGPGGDGVP AEVHIVRNGG TSMMVENSAV CPAPHPDAAL THSMAALILL ENSP00000330633/1-1040 TTGPGGDGIP AEVHIVRNGG TSMMVENMAV RPAPHPGTVI SHSVAMLILI bmy_02394T0/1-1124 TTGPGGDGVP AEVHIVRNGG TSMMVENSAG CPVPHPGTVL CHSVATLILI BACU009867/1-1044 TTGPGGDGVP AEVHIVRNGD AKPQTGNQ-- ------GETA TNQYFTLQLS 1151 1200 ENSTTRP00000006226/1-1001 ------- ENSBTAP00000019501/1-1040 GYLQL-- ENSP00000330633/1-1040 GSLEL-- bmy_02394T0/1-1124 GYLEL-- BACU009867/1-1044 GQQVPED