KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:14 2014 Check: 00 .. Name: ENSP00000393392/1-1043 Len: 1132 Check: 7576 Weight: 1.00 Name: ENSBTAP00000019518/1-1043 Len: 1132 Check: 8238 Weight: 1.00 Name: ENSTTRP00000012389/1-1036 Len: 1132 Check: 8709 Weight: 1.00 Name: bmy_03896T0/1-1008 Len: 1132 Check: 6334 Weight: 1.00 Name: BACU018221/1-1130 Len: 1132 Check: 6711 Weight: 1.00 // 1 50 ENSP00000393392/1-1043 MPLLEGSVGV EDLVLLEPLV EESLLKNLQL RYENKEIYTY IGNVVISVNP ENSBTAP00000019518/1-1043 MTLLEGSVGV EDLVLLEPLE QESLIRNLQL RYEKKEIYTY IGNVLVSVNP ENSTTRP00000012389/1-1036 MTLLEGSIGV EDLVLLEPLE QESLIKNLQL RYENGEIYTY IGNVLVSVNP bmy_03896T0/1-1008 MTLLEGCIGV EDLVLLEPLE QESLIKNLQL RYENGEIYTY IGNVLVSVNP BACU018221/1-1130 -TLLEGCIGV EDLVLLEPLE QESLIKNLQL RYEKGEIYTY IGNVLVSVNP 51 100 ENSP00000393392/1-1043 YQQLPIYGPE FIAKYQDYTF YELKPHIYAL ANVAYQSLRD RDRDQCILIT ENSBTAP00000019518/1-1043 YQQLPIYDLE FVAKYRDYTF YELKPHIYAL ANMAYQSLRD RDRDQCILIT ENSTTRP00000012389/1-1036 YQQLPIYGPE FIARYRDYTF YELKPHVYAL ANEAYQSLRD QDQDQCILIT bmy_03896T0/1-1008 YQQLPIYGPE FIAKYWDYTF YELKPHIYAL ANVAYQSLRD QDQDQCILIT BACU018221/1-1130 YQQLPIYGPE FIAKYCDYTF YELKPHIYAL ANVAYQSLRD QDQDQCILIT 101 150 ENSP00000393392/1-1043 GESGSGKTEA SKLVMSYVAA VCGKGEQVNS VKEQLLQSNP VLEAFGNAKT ENSBTAP00000019518/1-1043 GESGAGKTEA SKLVMSYVAA VCGKGEQVNS VKEQLLQSNP VLEAFGNAKT ENSTTRP00000012389/1-1036 GESGAGKTEA SKLVMTYVAA VCGEGERVNS VKEQLLQSNP VLEAFGNAKT bmy_03896T0/1-1008 GESGAGKT-- ---------- ---------- ---------- ---AFGNAKT BACU018221/1-1130 GESGAGKTEA SKLVMTYVAA VCGEGERVNS VKEQLLQSNP VLEAFGNAKT 151 200 ENSP00000393392/1-1043 IRNNNSSRFG KYMDIEFDFK GSPLGGVITN YLLEKSRLVK QLKGERNFHI ENSBTAP00000019518/1-1043 IRNNNSSRFG KYMDIEFDFK GFPLGGVITN YLLEKSRVVK QLEGERNFHI ENSTTRP00000012389/1-1036 IRNNNSSRFG KYMDVEFDFK GSPLGGIITN YLLEKSRVVK HLEGERNFHI bmy_03896T0/1-1008 IRNNNSSRFG KYMDVEFDFK GSPLGGVITN YLLEKSRVVK HLEGERNFHI BACU018221/1-1130 IRNNNSSRFG KYMDVEFDFK GSPLGGVITN YLLEKSRVVK HLEGERNFHI 201 250 ENSP00000393392/1-1043 FYQLLAGADE QLLKALKLER DTTGYAYLNH EVSRVDGMDD ASSFRAVQSA ENSBTAP00000019518/1-1043 FYQLLAGADA QLLKALKLER DTGGYAYLNP DTSRVDGMDD DANFKVLQSA ENSTTRP00000012389/1-1036 FYQLLAGADP ELLKALKLER DTNGYAYLNP GASRVDGMDD TANFKALQSA bmy_03896T0/1-1008 FYQLLAGADP QLLKALKLER DTNGYAYLNP GASRVDGMDD TANFKALQSA BACU018221/1-1130 FYQLLAGADP QLLKALKLER DTNGYAYLNP GASRVDGMDD TANFKALQSA 251 300 ENSP00000393392/1-1043 MAVIGFSEEE IRQVLEVTSM VLKLGNVLVA DEFQASGIPA SGIRDGRGVR ENSBTAP00000019518/1-1043 MTVIGFSDEE IRQVLEVAAL VLKLGNVELI NEFQANGVPA SGIRDGRGVQ ENSTTRP00000012389/1-1036 MTVIGFSKEE IRQVLEVVAL VLKLGNVELA DEFQANGVPA SGIRDGRGIQ bmy_03896T0/1-1008 MTVIGFSKEE IRQVLEVVAL VLKLGNVELV DEFQANGVPA SGIRDGKGIQ BACU018221/1-1130 MTVIGFSKEE IRQVLEVVAL VLKLGNVELA DEFQANGVPA SGIRDGKGIQ 301 350 ENSP00000393392/1-1043 EIGEMVGLNS EEVERALCSR TMETAKEKVV TALNVMQAQY ARDALAKNIY ENSBTAP00000019518/1-1043 EIGELVGLNS VELERALCSR TMETAKEKVV TTLNVIQAQY ARDALAKNIY ENSTTRP00000012389/1-1036 EIGEMVGLNS VELERALCSR TMETAREKVV TALNVVQ-QY ARDALAKNVY bmy_03896T0/1-1008 EIGEMVGLNS AELERALCSR TMETAKEKVV TALNVVQAQY ARDALAKNVY BACU018221/1-1130 EIGEMVGLNS AELERALCSR TMETAKEKVV TALNVVQAQY ARDALAKNVY 351 400 ENSP00000393392/1-1043 SRLFDWIVNR INESIKVGIG EKKKVMGVLD IYGFEILEDN SFEQFVINYC ENSBTAP00000019518/1-1043 SRLFNWLVNR INESIKVGTG EKRKVMGVLD IYGFEILEDN SFEQFVINYC ENSTTRP00000012389/1-1036 SRLFTWLVNR INESIQVGTG EKRKVMGVLD IYGFEILEDN SFEQFVINYC bmy_03896T0/1-1008 SRLFNWLVNR INESIKVGTG EKKKVMGVLD IYGFEILEDN SFEQFVINYC BACU018221/1-1130 SRLFNWLVNR INESIKVGTG EKRKVMGVLD IYGFEILKDN SFEQFVINYC 401 450 ENSP00000393392/1-1043 NEKLQQVFIE MTLKEEQEEY KREGIPWTKV DYFDNGIICK LIEHNQRGIL ENSBTAP00000019518/1-1043 NEKLQQVFIE MTLKEEQEEY KREGIPWVKV EYFDNGIICN LIEHNQRGIL ENSTTRP00000012389/1-1036 NEKLQQVFIE ITLKEEQEEY KREGIPWVKV DYFDNGIICN LIEDNQRGIL bmy_03896T0/1-1008 NEKLQQVFIE ITLKEEQEEY KREGIPWVKV DYFDNGIICN LIEHNQRGIL BACU018221/1-1130 NEKLQQVFIE ITLKEEQEEY KREGIPWVKV DYFDNGIICN LIEHNQRGIL 451 500 ENSP00000393392/1-1043 AMLDEECLRP GVVSDSTFLA KLNQLFSKHG HYESKVTQNA QRQYDHTMGL ENSBTAP00000019518/1-1043 AMLDEECLRP GVVSDSTFLA KLNQLFSKHS HYESKVTQNA QRQYDHSMGL ENSTTRP00000012389/1-1036 AMLDEECLRP GVVSDSTFLA KLNQIFSKHG HYESKVTQNA QHQYDHSMGL bmy_03896T0/1-1008 AMLDEECLRP GVVSDSTFLA KLNQVFSKHD HYESKVTQNA QRQYDHSMGL BACU018221/1-1130 AMLDEECLRP GMVSDSTFLA KLNQVFSKHN HYESKVTQNA QHQYDHSMGL 501 550 ENSP00000393392/1-1043 SCFRICHYAG KVTYNVTSFI DKNNDLLFRD LLQAMWKAQH PLLRSLFPEG ENSBTAP00000019518/1-1043 SCFRICHYAG KVTYNVNSFI DKNNDLLFRD LSQAMWKARH PLLRSLFPEG ENSTTRP00000012389/1-1036 SCFRICHYAG KVTYNVNSFI DKNNDLLFRD LSQAMWKAQH PLLRSLFPEG bmy_03896T0/1-1008 SCFRICHYAG KVTYNVNSFI DKNNDLLFRD LSQAMWKAQH PLLRSLFPEG BACU018221/1-1130 SCFRICHYAG KVTYNVNSFI DKNNDLLFRD LSQAMWKAQH PLLRSLFPEG 551 600 ENSP00000393392/1-1043 NPKQASLKRP PTAGAQFKSS VAILMKNLYS KSPNYIRCIK PNEHQQRGQF ENSBTAP00000019518/1-1043 DPKQASLKRP PTAGAQFKSS VTTLMKNLYS KNPNYIRCIK PNEHQQRGHF ENSTTRP00000012389/1-1036 DPKQASLKRP PTAGVQ-KGS VA-----LXX KKPNYIRCIK PNEHQKRGEF bmy_03896T0/1-1008 DPKQASLKRP PTAGVQFKGS VAXLMKNLYS KRPNYIRCIK PNEHQQRGEF BACU018221/1-1130 DPKQASLKRP PTAGVQFKGS VAILMKNLYS KRPNYIRCIK PNEHQQRGEF 601 650 ENSP00000393392/1-1043 SSDLVATQAR YLGLLENVRV RRAGYAHRQG YGPFLERYRL LSRSTWPHWN ENSBTAP00000019518/1-1043 SFELVSVQAQ YLGLLENVRV RRAGYAYRQA YGSFLERYRL LSRSTWPRWN ENSTTRP00000012389/1-1036 SSELVAVQSR YLGLLENVRV RRAGYAYRQA YGSFLERYRL LSRSTWPRWD bmy_03896T0/1-1008 SSELVTVQAR YLGLLENVRV RRAGYAYRQA YGSFLERYRL LSRSTWLRWD BACU018221/1-1130 SSELVAIQAR YLGLLENVRV RRAGYAYRQA YGSFLERYRL LSRSTWLRWD 651 700 ENSP00000393392/1-1043 GGDREGVEKV LGELSMSSGE LAFGKTKIFI RSPKTLFYLE EQRRLRLQQL ENSBTAP00000019518/1-1043 GGDQEGVEKV LGELSMSSEE LAFGKTKIFI RSPKTLFYLE EQRRLRLQQL ENSTTRP00000012389/1-1036 GGDREGVEKV LGELSVSSEE LAFGRTKIFI RSPKTLFHLE DQRRLRIHQL bmy_03896T0/1-1008 GGDREGVEKV LGELSVSSEE VAFGKTKIFI RSPKTLFYLE DQRRLRIQQL BACU018221/1-1130 GGDREGVEKV LGELSVSSEE VAFGKTKIFI RSPRTLFYLE DQRRLRIHQL 701 750 ENSP00000393392/1-1043 ATLIQKIYRG WRCRTHYQLM RKSQILISSW FRGNMQKKCY GKIKASVLLI ENSBTAP00000019518/1-1043 ATLIQKTYRG WRCRTHYQLM RKSQIVISSW FRGNMQKKHY RKMKASALLI ENSTTRP00000012389/1-1036 ATLIQKMYRG WRCRVHYQLM RKSQILISSW FRGNMQKKRY GKMKASALLI bmy_03896T0/1-1008 ATLIQKTYRG WRCRIHYQLM RKSQILISSW FRGNMQKKRY GKMKASALLI BACU018221/1-1130 ATLIQKTYRG WRCRVHYQLM RKSQILISSW FRGNMQKKRY GKMKASALLI 751 800 ENSP00000393392/1-1043 QAFVRGWK-- ---------- ---------- ---------- ---------- ENSBTAP00000019518/1-1043 QAFVRGWK-- ---------- ---------- ---------- ---------- ENSTTRP00000012389/1-1036 QAFVRGWK-- ---------- ---------- ---------- ---------- bmy_03896T0/1-1008 QAFVRGWK-- ---------- ---------- ---------- ---------- BACU018221/1-1130 QAFVRGWKVM GKGEGFPPLT WLLLVMPAWW GRVAERRSCP YPGHISVCWY 801 850 ENSP00000393392/1-1043 ---------- ---------- ---------- ---------- ------ARKN ENSBTAP00000019518/1-1043 ---------- ---------- ---------- ---------- ------ARKN ENSTTRP00000012389/1-1036 ---------- ---------- ---------- ---------- ------ARKN bmy_03896T0/1-1008 ---------- ---------- ---------- ---------- ------ARKN BACU018221/1-1130 VCVLVCFWVC SVCVWECGCI LGRSEYMLGC ITLYLYFGPF LVCPCQARKN 851 900 ENSP00000393392/1-1043 YRKYFRSEAA LTLADFIYKS MVQKFLLGLK NNLPSTNVLD KTWPAAPYKC ENSBTAP00000019518/1-1043 YRKYFRSGAA LILSNFIYKS MVQKFLLGLK NDLPSPSILD KKWPSAPYKY ENSTTRP00000012389/1-1036 YRKYFRSGAA LTLSDFIYKS MAQKFLLGLK NDLPSTNVLD KRWPAAPYKY bmy_03896T0/1-1008 YRKYFRSGAA LTLSNFIYKS IARKFLLGLK NDLPSTNVLD RRWPAAPYKY BACU018221/1-1130 YRKYFRSEAA LTLSDFIYKS IARKFLLGLK NDLPSTNVLD RRWPAAPYKY 901 950 ENSP00000393392/1-1043 LSTANQELQQ LFYQWKCKRF RDQLSPKQVE ILREKLCASE LFKGKKASYP ENSBTAP00000019518/1-1043 FNTANHELQR LFHQWKCKKF RDQLSPKQVE VLREKLCASE LFKGKKASYP ENSTTRP00000012389/1-1036 FNTANHELQK LFYQWKCKKF RDQLSPKQVE VLREKLCASE LFKGKKASYP bmy_03896T0/1-1008 FNTANHKLQK LFYQWKCKKF RDQLSPKQVE VLREKLCASE LFKGKKASYP BACU018221/1-1130 FNTANHELQK LFYQWKCKKF RDQLSPKQVE VLREKLCASE LFKGKKASYP 951 1000 ENSP00000393392/1-1043 QSVPIPFCGD YIGLQGNPKL QKLKGGEEGP VLMAEAVKKV NRGNGKTSSR ENSBTAP00000019518/1-1043 QSVPIPFHGD YIGLQRNPKL QKLKGGEEGP ILMAETVVKV NRGNAKTSSR ENSTTRP00000012389/1-1036 QSVPIPFHGD YIGLQGNPKL QKLKGREEGP VLVAETVMKV NRGNGKTSSR bmy_03896T0/1-1008 QSVPIPFHGD YVGLQGNPKL QKLKGGEEGP VLVAETVMKV NRGNGKTSSR BACU018221/1-1130 QSVPIPFHGD YVGLQGNPKL QKLKGGEEGP VLVAETVMKV NRGNGKTSSR 1001 1050 ENSP00000393392/1-1043 ILLLTKGHVI LTDTKKSQAK IVIGLDNVAG VSVTSLKDGL FSLHLSEMSS ENSBTAP00000019518/1-1043 ILLLTKGHVI ITDMKNPQAK TVIPLNSLAG VSVTSFKDGL FSLHLSEISS ENSTTRP00000012389/1-1036 ILLLTKGHVI ISDTKNSQAK IVVALNSVAR VSVTSFKDGL FSLHLSEISS bmy_03896T0/1-1008 ILLLTKGHVI ISDTKNSRAK TVIALNSVAG VSVTSFKDGL FSLHLSEVSS BACU018221/1-1130 ILLLTKGHVI ISDTKNSRAK TVVALNSVAR VSVTSFKDGL FSLHLNEVSE 1051 1100 ENSP00000393392/1-1043 -VGSKGDFLL VSEHVIELLT KMYRAVLDAT QRQLTVTVTE KFSVRFKENS ENSBTAP00000019518/1-1043 -VGSKGEFLL VSEHVIELLT KICRATLDAT QMQLPVTVTE EFSVKFKEGS ENSTTRP00000012389/1-1036 -VGSKGDFLL VSEHVIELLT KMYRAVLDAT QRQLPVTVTE EFSVRFKESS bmy_03896T0/1-1008 -VGSKGEFLL VSKHVIELLT KMYRAVLDAT QRQLPVTVTE EFSLRFKESS BACU018221/1-1130 LVGSKGDFLL VSKHVIELLT KMYRAVLDAT QRQLPVTVTE EFSLRFKESS 1101 1150 ENSP00000393392/1-1043 VAVKVVQGPA GGDNSKLRYK KKGSHCLEVT VQ ENSBTAP00000019518/1-1043 LTVKVIQGPG GGGTGKLSFK KKGSRCLEVT VQ ENSTTRP00000012389/1-1036 LAVKVIQGPG GGGNGKLSCK KKGSRCLEVT VQ bmy_03896T0/1-1008 LAVKVIQGPG GGGNGKLSCK KKGSRCLEVT VQ BACU018221/1-1130 LAVKVIQGPG GGGNGKLSCK KKGSRCLEVT V-