KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:15 2014 Check: 00 .. Name: ENSP00000300128/1-444 Len: 458 Check: 4071 Weight: 1.00 Name: ENSBTAP00000019519/1-403 Len: 458 Check: 1125 Weight: 1.00 Name: ENSTTRP00000012391/1-445 Len: 458 Check: 7883 Weight: 1.00 Name: bmy_03895T0/1-445 Len: 458 Check: 6900 Weight: 1.00 Name: BACU008148/1-453 Len: 458 Check: 5456 Weight: 1.00 // 1 50 ENSP00000300128/1-444 MAGGMKVAVS PAVGPGPWGS GVGGGGTVRL LLILSGCLVY GTAETDVNVV ENSBTAP00000019519/1-403 ---------- ---------- ---------- ---------- --AGIDLNVV ENSTTRP00000012391/1-445 MAGGMKVAVL SAVGAGPWSW GAGGGGAVRL LLVLSGCLVC GSAGIDLNVV bmy_03895T0/1-445 MAGGMKVAVL PAVGAGPWSW GAGGGGAVRL LLVLSGCLVC GSAGIDLNVV BACU008148/1-453 MAGGMKVAVL PAVGAGPWSW GAGGGGAVRL LLVLSGCLVC GSAGIDLNVV 51 100 ENSP00000300128/1-444 MLQESQVCEK RASQQFCYTN VLIPKWHDIW TRIQIRVNSS RLVRVTQVEN ENSBTAP00000019519/1-403 TLRESEILFM NTSRQSCYKN VLIPKWHDIW TRIQIRVNSS KLVRVTQVEN ENSTTRP00000012391/1-445 MLQESQVYYM NTSQQSCYKN VLIPKWHDIW TQIQIRVNSS KLVRVTQVEN bmy_03895T0/1-445 MLQESKVYYM NTSQQSCYKN VLIPKWHDIW TQIQIRVKSS KLVRVTQVEN BACU008148/1-453 MLQESKVYYM NTSQQSCYKN VLIPKWHDIW TQIQIRVNSS KLVRVTQVEN 101 150 ENSP00000300128/1-444 EEKLKELEQF SIWNFFSSFL KEKLNDTYVN VGLYSTKTCL KVEIIEKDTK ENSBTAP00000019519/1-403 EDKLKELEQF SIWNFFSSFL KEKLNDTYIN VGLYSTKTCL KVEILEEDTK ENSTTRP00000012391/1-445 EDKLKELEKF SIWNFFSSFL KEKLNDTSVN VGLYSTKTCL KVEIIEEDTK bmy_03895T0/1-445 EEKLKELEQF SIWNFFSSFL KEKLNDTYVN VGLYSTKTCL KVEILEEDTK BACU008148/1-453 EEKLKELEQF SIWNFFSSFL KEKLNDTYVN VGLYSTKTCL KVEILEEDTK 151 200 ENSP00000300128/1-444 YSVIVIRR-- ---------- -FDPKLFLVF LLGLMLFFCG DLLSRSQIFY ENSBTAP00000019519/1-403 YSVIVTRR-- ---------- -FDPKLFLIF LLGLTLFFCG DLLSRSQIFY ENSTTRP00000012391/1-445 YSVTVTRR-- ---------- -FDPKLFLIF LLGLILFFCG DLLSRSQIFY bmy_03895T0/1-445 YSVIVTRR-- ---------- -FDPKLFLIF LLGLILFFCG DLLSRSQIFY BACU008148/1-453 YSVIVTRNSE LLNVKAVGVS GFDPKLFLIF LLGLILFFCG DLLSRSQIFY 201 250 ENSP00000300128/1-444 YSTGMTVGIV ASLLIIIFIL SKFMPKKSPI YVILVGGWSF SLYLIQLVFK ENSBTAP00000019519/1-403 YSTGMSVGIV ASLLIIIFIV SKFMPKKSPI YIILVGGWSF SLYLIQLVFK ENSTTRP00000012391/1-445 YSTGMSVGIV TSLLIIIFML SKFMPKKSPI YIILVGGWSF SLYLIQLVFK bmy_03895T0/1-445 YSTGMSVGIV ASLLIIIFML SKFMPKKSPI YIILVGGWSF SLYLIQLVFK BACU008148/1-453 YSTGMSVGIV ASLLIIIFML SKFMPKKSPI YIILVGGWSF SLYLIQLVFK 251 300 ENSP00000300128/1-444 NLQEIWRCYW QYLLSYVLTV GFMSFAVCYK YGPLENERSI NLLTWTLQLM ENSBTAP00000019519/1-403 NLQEIWRCYW QYLLSYVLAV GFMSFAVCYK YGPLENERSI NLLTWTLQLL ENSTTRP00000012391/1-445 NLQEIWRCYW QYLLSYVLAV GFMSFAVCYK YGPLENERSI NLLTWTLQLM bmy_03895T0/1-445 NLQEIWRCYW QYLLSYVLAV GFMSFAVCYK YGPLENERSI NLLTWTLQLM BACU008148/1-453 NLQEIWRCYW QYLL-----I GFMSFAVCYK YGPLENERSI NLLTWTLQLM 301 350 ENSP00000300128/1-444 GLCFMYSGIQ IPHIALAIII IALCTKNLEH PIQWLYITCR KVCKGAEKPV ENSBTAP00000019519/1-403 GLCFMYSSIQ IPHIALAIVV IALCTKNLDY PIHWLYITYR KMCKATEKTV ENSTTRP00000012391/1-445 GLCFMYSSIQ IPHIALAIII TALCTKSVEY PIHWLYITYR KMCNATEKTV bmy_03895T0/1-445 GLCFMYSGIQ IPHIALAIII IALCTKSLEY PIHWLYITYR KMCNATEKTV BACU008148/1-453 GLCFMYSGIQ IPHIALAIII IALCTKSLEY PIHWLYITYR KMCNATEKTV 351 400 ENSP00000300128/1-444 PPRLLTEEEY RIQGEVETRK ALEELREFCN SPDCSAWKTV SRIQSPKRFA ENSBTAP00000019519/1-403 PPRLLTEEEY RLQGEVETRK ALEQLREYCN SPDCSAWKTV SRIQSPKRFA ENSTTRP00000012391/1-445 PPRLLTEEEY RIQGEVETRK ALEKLREYCN SPDCPAWKTV SRIQSPKRFA bmy_03895T0/1-445 PPRLLTEEEY RIQGEVETRK ALEKLREYCN SPDCSAWKTV SRIQSPKRFA BACU008148/1-453 PPRLLTEEEY RIQGEVETRK ALEKLREYCN SPDCSAWKTV SRIQSPKRFA 401 450 ENSP00000300128/1-444 DFVEGSSHLT PNEVSVHEQE YGLGSIIAQD EIYEEASSEE EDSYSRCPAI ENSBTAP00000019519/1-403 DFVEGSFHLT PNEVSVHEQE YGLGSIIAQD ELSEETSSEE EDSDSRYPLV ENSTTRP00000012391/1-445 DFVEGSFHLT PNEVSVHEQE YGLESIIAQD ELYEETSSEE EDLDSRYPPI bmy_03895T0/1-445 DFVEGSFHLT PNEVSVHEQE YGLESIIAQD ELYEETSSEE EDSDSRYPPI BACU008148/1-453 DFVEGSFHLT PNEVSVHEQE YGLESIIAQD ELYEETFSEE EDSDSRYPPI 451 500 ENSP00000300128/1-444 T-QNNFLT ENSBTAP00000019519/1-403 VQQNSFLT ENSTTRP00000012391/1-445 TQQNSFLT bmy_03895T0/1-445 TQQNSLLT BACU008148/1-453 TQQNSLLT