KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:08:17 2014 Check: 00 ..
Name: ENSP00000251582/1-1211 Len: 1648 Check: 9567 Weight: 1.00
Name: ENSBTAP00000019526/1-1205 Len: 1648 Check: 7911 Weight: 1.00
Name: ENSTTRP00000010979/1-1161 Len: 1648 Check: 4707 Weight: 1.00
Name: bmy_03343T0/1-1181 Len: 1648 Check: 912 Weight: 1.00
Name: BACU002919/1-1013 Len: 1648 Check: 8529 Weight: 1.00
//
1 50
ENSP00000251582/1-1211 MDPPAGAARR LLCPALLLLL LLLPPPLLPP PPPPANARL- AAAADPPGGP
ENSBTAP00000019526/1-1205 MDPPAGAAGR LLCPALLLLL LL-------- -PLPADARLA AAAADPPGGP
ENSTTRP00000010979/1-1161 MDPPAGAARR LLCPALLLLL LP-----LLL PPLPADARL- AAAADPPGWP
bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ----------
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000251582/1-1211 LGHGAERILA VPVRTDAQGR LVSHVVSAAT SRAGVRARRA APVRTPSFPG
ENSBTAP00000019526/1-1205 QGHGAERILA VPVRTDAQGR LVSHVVSAAT APAGVRTRRA APAQIPGLSG
ENSTTRP00000010979/1-1161 QGHGAERILA VPVRTDAQGL LVSHVVSAAT AHAGVRARRA APVQIPGFSG
bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ----------
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000251582/1-1211 GNEEEPGSHL FYNVTVFGRD LHLRLRPNAR LVAPGATMEW QGEKGTTRVE
ENSBTAP00000019526/1-1205 GSEEDPGGRL FYNVTVFGRD LHLRLRPNAR LVAPGATVEW QGESGATRVE
ENSTTRP00000010979/1-1161 GSEEDPGGRL FYNVTVFGRD LHLRLRPNAR LVAPGATVEW QSESGATRVE
bmy_03343T0/1-1181 -----MGGQV ---------- ---------- ---------- ----------
BACU002919/1-1013 -----MGQRL ---------- ---------- ---------- ----------
151 200
ENSP00000251582/1-1211 PLLGSCLYVG DVAGLAEASS VALSNCDGLA GLIRMEEEEF FIEPLEKGLA
ENSBTAP00000019526/1-1205 PLLGTCLYVG DVAGLAESSS VALSNCDGLA GLIRMEEEEF FIEPLEKGLA
ENSTTRP00000010979/1-1161 PLLGTCLYVG DVAGLAEASS VALSNCDGLA GLIRMEEEEF FIEPLEKGLA
bmy_03343T0/1-1181 ---------- ---------- -----ISGSA ---------- ----------
BACU002919/1-1013 ---------- ---------- -----CLGPA ---------- ----------
201 250
ENSP00000251582/1-1211 AQEAEQGRVH VVYRRPPTS- -PPLGGPQAL DTGASLDSLD SLSRALGVLE
ENSBTAP00000019526/1-1205 AKEAEQGRVH VVYHRPTTSR PPPLGGPQAL DTGISADSLD SLSRALGVLE
ENSTTRP00000010979/1-1161 ANETEQGRVH VVYRRPPTSR PPPLGGPQAL DTGIFPGSLD SFSRALGILE
bmy_03343T0/1-1181 ---------- AVQEDP---- ---------- ---------- ----------
BACU002919/1-1013 ----WKGRGS SSKRGPPECG VLEFG----- --GTSPSGLD SLSRALGILE
251 300
ENSP00000251582/1-1211 EHANSSRRRA RRHAADDDYN IEVLLGVDDS VVQFHGKEHV QKYLLTLMNI
ENSBTAP00000019526/1-1205 ERVNSSRRRM RRHAADDDYN IEVLLGVDDS VVQFHGTEHV QKYLLTLMNI
ENSTTRP00000010979/1-1161 ERVNSSRQRV RRHAADDDYN IEVLLGVDDS VVQFHGKEHV QKYLLTLMNI
bmy_03343T0/1-1181 ---------- ---------- ---------- -----GRQG- ----------
BACU002919/1-1013 ERVNSSRQRV RRHAADDDYN IEVLLGVDDS VVQFHGKEHV QKYLLTLMNI
301 350
ENSP00000251582/1-1211 VNEIYHDESL GAHINVVLVR IILLSYGKSM SLIEIGNPSQ SLENVCRWAY
ENSBTAP00000019526/1-1205 VNEIYHDESL GAHINVVLVR IILLSYGKSM SLIEIGNPSQ SLENVCRWAY
ENSTTRP00000010979/1-1161 VNEIYHDESL GAHINVVLVR IILLSYGKSL SLIEIGNPSQ SLENVCRWAY
bmy_03343T0/1-1181 ---------- ---------- ---------- -----GTPGG SLKWEVAW--
BACU002919/1-1013 VNEIYHDESL GAHINVVLVR IILLSYGKSL SLIEIGNPSQ SLENVCRWAY
351 400
ENSP00000251582/1-1211 LQQKPDTGHD EYHDHAIFLT RQDFGPSGMQ GYAPVTGMCH PVRSCTLNHE
ENSBTAP00000019526/1-1205 LQQKPDTDHD EYHDHAIFLT RQDFGPSGMQ GYAPVTGMCH PVRSCTLNHE
ENSTTRP00000010979/1-1161 LQQXXXXXXX XXXXXXXXXX XXXXXXXXXX XYAPVTGMCH PVRSCTLNHE
bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ----------
BACU002919/1-1013 LQQKPDSGHD EYHDHAIFLT RQDFGPSGMQ GYAPVTGMCH PVRSCTLNHE
401 450
ENSP00000251582/1-1211 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH
ENSBTAP00000019526/1-1205 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH
ENSTTRP00000010979/1-1161 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH
bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- LAAGALFQ--
BACU002919/1-1013 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH
451 500
ENSP00000251582/1-1211 WSRCSQQELS RYLHSYDCLL DDPFAHDWPA LPQLPGLHYS MNEQCRFDFG
ENSBTAP00000019526/1-1205 WSRCSQQELS RYLHSYDCLR DDPFTHDWPA LPQLPGLHYS MNEQCRFDFG
ENSTTRP00000010979/1-1161 WSRCSQQELS RYLHSYDCLR DDPFTHDWPA LPQLPGLHYS MNEQCRFDFG
bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ----------
BACU002919/1-1013 WSRCSQQELS RYLHSYDCLR DDPFTHDWPA LPQLPGLHYS MNEQCRFDFG
501 550
ENSP00000251582/1-1211 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK----
ENSBTAP00000019526/1-1205 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK----
ENSTTRP00000010979/1-1161 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK----
bmy_03343T0/1-1181 --------FR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGKSHWL
BACU002919/1-1013 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK----
551 600
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ----------
bmy_03343T0/1-1181 MCRLHLYEWR CVGTPGWGFH PADTVWGGLW LWGQSRLNKA LRMVGDQGGG
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
601 650
ENSP00000251582/1-1211 ---------- ---------- -HCFKGHCIW LTPDILKRDG SWGAWSPFGS
ENSBTAP00000019526/1-1205 ---------- ---------- -HCFKGHCIW LTPDILKRDG NWGAWSPFGS
ENSTTRP00000010979/1-1161 ---------- ---------- -HCFKGHCIW LTPDILKRDG NWGAWSPFGS
bmy_03343T0/1-1181 QGKLGGPTTY HASQRSSELL GHCFKGHCIW LTPDILKRDG NWGAWSPFGS
BACU002919/1-1013 ---------- ---------- -HCFKGHCIW LTPDILKRDG NWGAWSPFGS
651 700
ENSP00000251582/1-1211 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCSR QDCPDSLADF
ENSBTAP00000019526/1-1205 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDALADF
ENSTTRP00000010979/1-1161 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDALADF
bmy_03343T0/1-1181 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDTLADF
BACU002919/1-1013 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDALADF
701 750
ENSP00000251582/1-1211 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESR ETGEVVSMKR
ENSBTAP00000019526/1-1205 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR
ENSTTRP00000010979/1-1161 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR
bmy_03343T0/1-1181 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR
BACU002919/1-1013 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR
751 800
ENSP00000251582/1-1211 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC
ENSBTAP00000019526/1-1205 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC
ENSTTRP00000010979/1-1161 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC
bmy_03343T0/1-1181 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC
BACU002919/1-1013 TVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC
801 850
ENSP00000251582/1-1211 KVVKGTFTRS PKKHGYIKMF EIPAGARHLL IQEVDATSHH LAVKNLETGK
ENSBTAP00000019526/1-1205 KVVKGTFSRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK
ENSTTRP00000010979/1-1161 KVVKGTFTRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK
bmy_03343T0/1-1181 KVVKGTFTRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK
BACU002919/1-1013 KVVKGTFTRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK
851 900
ENSP00000251582/1-1211 FILNEENDVD ASSKTFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP
ENSBTAP00000019526/1-1205 FILNEENDVD PNSKTFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP
ENSTTRP00000010979/1-1161 FILNEENDVD PNSKSFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP
bmy_03343T0/1-1181 FILNEENDVD PNSKSFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP
BACU002919/1-1013 FILNEENDVD PNSKSFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP
901 950
ENSP00000251582/1-1211 VGDTRVSLTY KYMIHEDSLN VDDNNVLEED SVVYEWALKK WSPCSKPCGG
ENSBTAP00000019526/1-1205 EGDARISLTY KYMIHEDSLN VDDNNVLEDD SVGYEWALKK WSPCSKPCGG
ENSTTRP00000010979/1-1161 QGDARISLTY KYMIHEDSLN VDGNNVLEDN SVGYEWALKK WSPCSKPCGG
bmy_03343T0/1-1181 QGDARISLTY KYMIHEDSLN VDDNNVLEDN SVGYEWALKK WSPCSKPCGG
BACU002919/1-1013 QGDARISLTY KYMIHEDSLN VDDNNVLEDN SVGYEWALKK WSPCSKPCGG
951 1000
ENSP00000251582/1-1211 GSQFTKYGCR RRLDHKMVHR GFCAALSKPK AIRRACNPQE CSQPVWVTGE
ENSBTAP00000019526/1-1205 GSQFTKYGCR RRLDHKMVHR GFCDSVSKPK AIRRTCNPQE CSQPVWVTGE
ENSTTRP00000010979/1-1161 GSQFTKYGCR RRLDHKMVHR GFCDSLSKPK AIRRACNPQE CSQPVWVTGE
bmy_03343T0/1-1181 GSQFTKYGCR RRLDHKMVHR DFCDSLSKPK AIRRACNTQE CSQPVWVTGE
BACU002919/1-1013 GSQFTKYGCR RRLDHKMVHR GFCDSLSKPK AIRRACNAQE CSQPVWVTGE
1001 1050
ENSP00000251582/1-1211 WEPCSQTCGR TGMQVRSVRC IQPLHDNTTR SVHAKHCNDA RPESRRACSR
ENSBTAP00000019526/1-1205 WEPCSRSCGR TGMQVRSVRC VQPLHNNTTR SVHTKHCNDA RPEGRRACNR
ENSTTRP00000010979/1-1161 WEACSQSCGR TGMQVRS--- ---------- ---------- ----------
bmy_03343T0/1-1181 WEACSQSCGR TGMQVRSVRC IQPLHNNTTR SVHTKHCNDA RPEGRRACNR
BACU002919/1-1013 WEACSQSCGR TGMQVRSVRC IQPLHNNTTR SVHTKHCNDA RPEGRRACNR
1051 1100
ENSP00000251582/1-1211 ELCPGRWRAG PWSQCSVTCG NGTQERPVLC RTADDSFGIC QEERPETART
ENSBTAP00000019526/1-1205 ELCPGRWRAG SWSQCSVTCG NGTQERPVLC RTADDSFGVC REERPETARI
ENSTTRP00000010979/1-1161 ---------- ----CSVTCG NGTQERPVLC RTMDDSFGVC REERPETARI
bmy_03343T0/1-1181 ELCPGRWRAG PWSQCSVTCG NGTQERPVLC RTTDDSFGVC REERPETARI
BACU002919/1-1013 ELCPGRWRAG PWSQCSVTCG NGTQERPVLC RTTDDSFGVC REERPETARI
1101 1150
ENSP00000251582/1-1211 CRLGPCPRNI SDPSKKSYVV QWLSRPDPDS PIRKIS---- ----------
ENSBTAP00000019526/1-1205 CRLGPCPRNT SDPSKKSYVV QWLSRPDPNS PVQETS---- ----------
ENSTTRP00000010979/1-1161 CRLGPCPRNV SDPSKKSYVV QWLSRPDPNS PVQKTS---- ----------
bmy_03343T0/1-1181 CRLGPCPRNI SDPSKKSYVV QWLSRPDPNS PVQKTSSSNR PVYNSVSALQ
BACU002919/1-1013 CRLGPCPRNI SDPSKKSYVV QWLSRPDPNS PVQKTS---- ----------
1151 1200
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ----------
bmy_03343T0/1-1181 CMPCALWSLP TLLVESVFSG PLCSAVPFGA AWLGGQSCSG TARGTDLLWG
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
1201 1250
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ----------
bmy_03343T0/1-1181 CQDLAVMAFK GAKICRGAGG ARGQSLNAGA AGRKSRRSPP VPFQTPPTSE
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
1251 1300
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ----------
bmy_03343T0/1-1181 ARPEGSRGCA VLRRRPGRPA RFRQCVGGSL ATSAVAAAAD PVLCVLLTRV
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
1301 1350
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ----------
bmy_03343T0/1-1181 TVACFLWPLC PAHTTLGPRT LSPWGFRSSR GGRGRVPTVG HQDTPPLPFS
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
1351 1400
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ----------
bmy_03343T0/1-1181 VHSFQWPLSS CTHDPVHGRE REHGLTSAER RPALWPQRPF GADCCWSLGH
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
1401 1450
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ----------
bmy_03343T0/1-1181 SAAGAALHQR ATGLALGVTS VALPPVTPHS PQPRPLFIAS PLDSAQPSPG
BACU002919/1-1013 ---------- ---------- ---------- ---------- ----------
1451 1500
ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- -----SKGHC
ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- -----SKGRC
ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- -----SKGRC
bmy_03343T0/1-1181 TSYCYFSETG CLGLARCCLL LFTSVTNGAA GLQVPFWSIT SLVSDSKGRC
BACU002919/1-1013 ---------- ---------- ---------- ---------- -----SKGRC
1501 1550
ENSP00000251582/1-1211 QGDKSIFCRM EVLSRYCSIP GYNKLCCKSC NLYNNLTNVE GRIEPPPGKH
ENSBTAP00000019526/1-1205 QGDKSVFCRM EVLSRYCSIP GYNKLCCKSC NPHDNLTDVD DRAEPPSGKH
ENSTTRP00000010979/1-1161 QGDKSMFCRM EVLSRYCSIP GYNKLCCKSC NLQDNLTNVD DRAEPPSGKH
bmy_03343T0/1-1181 QGDKSMFCRM EVLSRYCSIP GYNKLCCKSC NLQDNLTNVD DRTEPPSGKH
BACU002919/1-1013 QGDKSMFCRM EVLSRYCSIP GYNKLCCKSC NLQDNLTNVD DRAEPPSGKH
1551 1600
ENSP00000251582/1-1211 NDIDVFMPTL PVPTVAMEVR PSPSTPLEVP LNASSTNATE DHPETNAVDE
ENSBTAP00000019526/1-1205 NDIEELMPTL SVPTLVMEVQ PPPGIPLEVP LNTSSTNATE DHPETNAVDV
ENSTTRP00000010979/1-1161 NDIEELMPTL PVPTLVMEVQ PPPGTPLEVP LNTSSTSATE DHPETNAVDV
bmy_03343T0/1-1181 NDIEELMPTL PVPTLVMEVQ PPPGTPLEVP LNTSSTGATE DHPETNAVDV
BACU002919/1-1013 NDIEELMPTL PVPTLVMEVQ PPPSAPLEVP LNTSSTGATE DHPEINAVDA
1601 1650
ENSP00000251582/1-1211 PYKIHGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF
ENSBTAP00000019526/1-1205 PYKIPGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF
ENSTTRP00000010979/1-1161 PYKIQGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF
bmy_03343T0/1-1181 PYKIHGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF
BACU002919/1-1013 PYKIHGLEDE VQPPNLIPRR PSPYEKTRNH RIQELIDEMR KKEMLGKF