KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:20 2014 Check: 00 .. Name: ENSP00000295373/1-1386 Len: 1417 Check: 7034 Weight: 1.00 Name: ENSBTAP00000019540/1-1382 Len: 1417 Check: 1205 Weight: 1.00 Name: ENSTTRP00000013590/1-1381 Len: 1417 Check: 9241 Weight: 1.00 Name: bmy_07475T0/1-1383 Len: 1417 Check: 8021 Weight: 1.00 Name: BACU001618/1-1383 Len: 1417 Check: 538 Weight: 1.00 // 1 50 ENSP00000295373/1-1386 MSSSVRRKGK PGKGGGKGSS RGGRGGRSHA SKSHGSGGGG GGGGGGGGGN ENSBTAP00000019540/1-1382 MSSSVRRKGK PGKGGGKGSS RGGRGGRSHA SKSQ------ ---KVNIGNG ENSTTRP00000013590/1-1381 MSSSVRRKGK PGKGGGKGSS RGGRGGRSHA SKSH----GG GSGGGGIGGN bmy_07475T0/1-1383 MSSSVRRKGK PGKGGGKGSS RGGRGGRSHA SKSH----GG GSGGGGIGGN BACU001618/1-1383 MSSSVRRKGK PGKGGGKGSS RGGRGGRSHA SKSH----GG GSGGSGIGGN 51 100 ENSP00000295373/1-1386 RKASSRIWDD GDDFCIFSES RRPSR--PSN SNISKGESRP KWKPKAKVPL ENSBTAP00000019540/1-1382 RVIENYINSD NSNTCLMKKR KRRTNGIPSN SSVRKGDGRP KWKPEAKVPL ENSTTRP00000013590/1-1381 RKASSRIWDD GDDFCIFSES RHSSR--PSN SSVRKGDAHP KWKPEAKAPL bmy_07475T0/1-1383 RKASSRIWDD GDDFSIFNES RRSSR--PSN SSVRKGDAHP KWKPEAKVPL BACU001618/1-1383 RKASSRIWDD GDDFSIFNES RRSSR--PSN SSVSKGDAHP KWKPEAKVPL 101 150 ENSP00000295373/1-1386 QTLHMTSENQ EKVKALLRDL QEQDADAGSE RGLSGEEEDD EPDCCNDERY ENSBTAP00000019540/1-1382 QTLHMTSENQ EKVKALLRDL QEQDADAGSE RGVSGEEEDD EPD-YDDEQY ENSTTRP00000013590/1-1381 QTLHMTSENQ EKVKALLRDL QEQDADAGSE RGVSGEEEDD EPD-YDDEQY bmy_07475T0/1-1383 QTLHMTSENQ EKVKALLRDL QEQDADVGSE RGVSGEDEDD EPD-DDDEQY BACU001618/1-1383 QTLHMTSENQ EKVKALLRDL QEQDADVGSE RGVSGEDEDD EPD-DDDEQY 151 200 ENSP00000295373/1-1386 WPAGQEPSLV PDLDPLEYAG LASVEPYVPE FTVSPFAVQK LSRYGFNTER ENSBTAP00000019540/1-1382 WSPGREASLV PDSDPLECAG SGLVEPHNPE FTVSAFAVHR LSRYGFHTEH ENSTTRP00000013590/1-1381 WSAGREASLV PDSDPLECAG SGLVEPHHPE FTVSTFAVQK LSRYGFNTEH bmy_07475T0/1-1383 WSAGREASLV PDSDPLECAG SGLVEPHYPE FTVSTFAVQK LSRYGFNTER BACU001618/1-1383 WSAGREASLV PDSDPSECAG SGLVEPHYPE FTVSTLAVQK LSRYGFNTER 201 250 ENSP00000295373/1-1386 CQAVLRMCDG DVGASLEHLL TQCFSETFGE RMKISEAVNQ ISLDECMEQR ENSBTAP00000019540/1-1382 CQAALRICDG DMGASLERLL TQCFSETFGE RMKISEAVAH MSLEECVEQR ENSTTRP00000013590/1-1381 CQVALRICNG DMGASLEHLL TQCFSETFGE RMKVSEAVAR ISLDECVEQR bmy_07475T0/1-1383 CQAALRICDG DLGASLEHLL TQCFSETFGE RMKISEAVAR ISLDECVEQR BACU001618/1-1383 CQAALRICDG DLGASLEHLL TQCFSETFGE RMKISEAVAR ISLDECVEQR 251 300 ENSP00000295373/1-1386 QEEAFALKSI CGEKFIERIQ NRVWTIGLEL EYLTSRFRKS KPKESTKNVQ ENSBTAP00000019540/1-1382 QEEAFALKSI CGEKFIERIQ NRVWTIGLEL EYLTSKFCKF KQKESTKNIQ ENSTTRP00000013590/1-1381 QEEAFALKSI CGEKFIERIQ NRVWTIGLEL GYLTSKFCKS KQKESTKNIQ bmy_07475T0/1-1383 QEEAFALKSI CGEKFIERIQ NRVWTIGLEL GYLASKFCKS KQKERTKNIQ BACU001618/1-1383 QEEAFALKSI CGEKFIERIQ NRVWTIGLEL GYLASKFCKS KQKERTKNIQ 301 350 ENSP00000295373/1-1386 ENSLEICKFY LKGNCKFGSK CRFKHEVPPN QIVGRIERSV DDSHLNAIED ENSBTAP00000019540/1-1382 EASLEVCKFY LKGNCKFGSK CKFKHEVPPN QIVGRVERNV DDSHLNANED ENSTTRP00000013590/1-1381 ETSLEICKFY LKGSCKFGSK CKFKHEVSPN QIVGRAERSV DDSHLNAD-D bmy_07475T0/1-1383 ETSLEICKFY LRGNCKFGSK CKFKHEVPPN QIVGKAERSV DDSHLNADED BACU001618/1-1383 ETSLEICKFY LRGNCKFGSK CKFKHEVPPN QIIGKAERSV DDSHLNADED 351 400 ENSP00000295373/1-1386 ASFLYELEIR FSKDHKYPYQ APLVAFYSTN ENLPLACRLH ISEFLYDKAL ENSBTAP00000019540/1-1382 ASFLYELEIR FSKDHKYPYQ APLVAFYSTN ENLPLACRLH ISEFLYGKAL ENSTTRP00000013590/1-1381 ASFLYELEIR FSKDHKYPYQ APLVAFYSTN ENLPLACRLH ISEFLYGKAL bmy_07475T0/1-1383 ASFLYELEIR FSKDHKYPYQ APLVAFYSTN ENLPLACRLH ISEFLYGKAL BACU001618/1-1383 ASFLYELEIR FSKDHKYPYQ APLVAFYSTN ENLPLACRLH ISEFLYGKAL 401 450 ENSP00000295373/1-1386 TFAETSEPVV YSLITLLEEE SEIVKLLTNT HHKYSDPPVN FLPVPSRTRI ENSBTAP00000019540/1-1382 TFAETSEPVV YSLITLLEEE SEITKLLTNT HHKYSVPPVN FLPVSPGTRL ENSTTRP00000013590/1-1381 TFAETSEPVV YSLITLLEEE SEITKLLTYT HHKYSVPPVN FLPVSSGTRI bmy_07475T0/1-1383 TFAETSEPVV YSLITLLEEE SEIAKLLTNT HHKYSVPPEN FLPVSSETRI BACU001618/1-1383 TFAETSEPVV YSLITLLEEE SEIAKLLTNT HHKYSTPPVN FLPVSSGTRI 451 500 ENSP00000295373/1-1386 NNPACHKTVI PNNSFVSNQI PEVEKASES- EESDEDDGPA PVIVENESYV ENSBTAP00000019540/1-1382 NNPVCRKPVI PSNSFFSNQI PEVEKESEPE EETDEDEGPA PVMVENESYV ENSTTRP00000013590/1-1381 NNPVCRKPVI PSNSFLSNQI PEVEKESEPE EETDEDEGPA PVMVENESYV bmy_07475T0/1-1383 NNPVCHKPVI PSNSFLSNQI PEVEKESEPE EETDEDEGPA PVMVENESYV BACU001618/1-1383 NNPVCHKPVI PSNSFLSNQI PEVEKESEPE EETDEDEGPA PVMVENESYV 501 550 ENSP00000295373/1-1386 NLKKKISKRY DWQAKSVHAE NGKICKQFRM KQASRQFQSI LQERQSLPAW ENSBTAP00000019540/1-1382 NLKKKISKRY DWQAKSVHAE NVKICKQFRI KQASRQFQSV LQERQSLPAW ENSTTRP00000013590/1-1381 NLKKKISKRY DWQAKSVHAE NVKICKQFRI KQASRQFQSI LQERQLLPAW bmy_07475T0/1-1383 NLKKKISKRY DWQAKSVRAE NVKICKQFRI KQASRQFQSI LQERQLLPAW BACU001618/1-1383 NLKKKISKRY DWQAKSVRAE NVKICKQFRI KQASRQFQSI LQERQLLPAW 551 600 ENSP00000295373/1-1386 EERETILNLL RKHQVVVISG MTGCGKTTQI PQFILDDSLN GPPEKVANII ENSBTAP00000019540/1-1382 EERENILKLL SKHQVLVVSG MTGCGKTTQI PQFILDDSLN GPPEKVANII ENSTTRP00000013590/1-1381 EERENILKLL SKHQVLVISG MTGCGKTTQI PQFILDDSLN GPPEKVANII bmy_07475T0/1-1383 EERENILKLL SKHQVLVISG MTGCGKTTQI PQFILDDSLN GPPEKVANII BACU001618/1-1383 EERENILKLL SKHQVLVISG MTGCGKTTQI PQFILDDSLN GPPEKVANII 601 650 ENSP00000295373/1-1386 CTQPRRISAI SVAERVAKER AERVGLTVGY QIRLESVKSS ATRLLYCTTG ENSBTAP00000019540/1-1382 CTQPRRISAI SVAERVAKER AERVGLTVGY QIRLESVKSS ATRLLYCTTG ENSTTRP00000013590/1-1381 CTQPRRISAI SVAERVAKER AERVGLTVGY QIRLESVKSS ATRLLYCTTG bmy_07475T0/1-1383 CTQPRRISAI SVAERVAKER AERVGLTVGY QIRLESVKSS ATRLLYCTTG BACU001618/1-1383 CTQPRRISAI SVAERVAKER AERVGLTVGY QIRLESVKSS ATRLLYCTTG 651 700 ENSP00000295373/1-1386 VLLRRLEGDT ALQGVSHIIV DEVHERTEES DFLLLVLKDI VSQRPGLQVI ENSBTAP00000019540/1-1382 VLLRRLEGDT ALQGVTHIIV DEVHERTEES DFLLLVLKDI VLQRPTLQVI ENSTTRP00000013590/1-1381 VLLRRLEGDT ALQGITHIIV DEVHERTEES D-LLLVLKDI VLQRPTLQVI bmy_07475T0/1-1383 VLLRRLEGDT ALQGITHIIV DEVHERTEES DFLLLVLKDI VLQRPTLQVI BACU001618/1-1383 VLLRRLEGDT ALQGITHIIV DEVHERTEES DFLLLVLKDI VLQRPTLQVI 701 750 ENSP00000295373/1-1386 LMSATLNAEL FSDYFNSCPV ITIPGRTFPV DQFFLEDAIA VTRYVLQDGS ENSBTAP00000019540/1-1382 LMSATLNAEL FSEYFNSCPV ITIPGRTFPV DQFFLEDAIA VTRYVLQDGS ENSTTRP00000013590/1-1381 LMSATLNAEL FSEYFNSCPV ITIPGRTFPV DQFFLEDAIA VTRYVLQDGS bmy_07475T0/1-1383 LMSATLNAEL FSEYFNSCPV ITIPGRTFPV DQFFLEDAIA VTRYVLQDGS BACU001618/1-1383 LMSATLNAEL FSQYFNSCPV ITIPGRTFPV DQFFLEDAIA VTRYVLQDGS 751 800 ENSP00000295373/1-1386 PYMRSMKQIS KEKLKARRNR TAFEEVEEDL RLSLHLQDQD SVKDAVPDQQ ENSBTAP00000019540/1-1382 PYARSMKQMS KEKLKARRSR TAFEEVEEDL RLSLHLQDQD SVKDAVPDQQ ENSTTRP00000013590/1-1381 PYARSMKQMS KEKLKARRSR TAFEEVEEDL RLSLHLHDPD STKDAVPDQQ bmy_07475T0/1-1383 PYARSMKQMS KEKLKARRSR TAFEEVEEDL RFSLHLHDQD STKDAVPDQQ BACU001618/1-1383 PYARSMKQMS KEKLKARRSR TAFEEVEEDL RFSLHLHDQD STKDAVPDQQ 801 850 ENSP00000295373/1-1386 LDFKQLLARY KGVSKSVIKT MSIMDFEKVN LELIEALLEW IVDGKHSYP- ENSBTAP00000019540/1-1382 LDFKQLLARY QGVSKSVIKT MSVMDFEKVN LELIEALLEW IVDGKHSYPP ENSTTRP00000013590/1-1381 LDFKQLLARY KGVSKSVIKT MSVMDFEKVN LELIEALLEW IVDGKHSYP- bmy_07475T0/1-1383 LDFKQLLARY KGVSKSVIRT MSIMDFEKVN LELIEALLEW IVDGKHSYP- BACU001618/1-1383 LDFKQLLARY KGVSKSVIRT MSIMDFEKVN LELIEALLEW IVDGKHSYP- 851 900 ENSP00000295373/1-1386 -PGAILVFLP GLAEIKMLYE QLQSNSLFNN RRSNRCVIHP LHSSLSSEEQ ENSBTAP00000019540/1-1382 DPGAILVFLP GLAEIKMLYE QLQSNSLFNN RRSNRCVIHP LHSSLSSEEQ ENSTTRP00000013590/1-1381 -PGAILVFLP GLAEIKMLYE QLQSNSLFNN RRSNRCVVHP LHSSLSSEEQ bmy_07475T0/1-1383 -PGAILVFLP GLAEIKMLYE QLQSNSLFNN RRSNRCVVHP LHSSLSSEEQ BACU001618/1-1383 -PGAILVFLP GLAEIKMLYE QLQSNSLFNN RRSNRCVVHP LHSSLSSEEQ 901 950 ENSP00000295373/1-1386 QAVFVKPPAG VTKIIISTNI AETSITIDDV VYVIDSGKMK EKRYDASKGM ENSBTAP00000019540/1-1382 QAVFVKPPMG VTKIIISTNI AETSITIDDV VYVIDSGKMK EKRYDASKGM ENSTTRP00000013590/1-1381 QAVFVKPPIG VTKIIISTNI AETSITIDDV VYVIDSGKMK EKRYDASKGM bmy_07475T0/1-1383 QAVFVKPPVG VTKIIISTNI AETSITIDDV VYVIDSGKMK EKRYDASKGM BACU001618/1-1383 QAVFVKPPVG VTKIIISTNI AETSITIDDV VYVIDSGKMK EKRYDASKGM 951 1000 ENSP00000295373/1-1386 ESLEDTFVSQ ANALQRKGRA GRVASGVCFH LFTSHHYNHQ LLKQQLPEIQ ENSBTAP00000019540/1-1382 ESLEDTFVSQ ANALQRKGRA GRVASGVCFH LFTSHHFNHQ LLKQQLPEIQ ENSTTRP00000013590/1-1381 ESLEDTFVSQ ANALQRKGRA GRVASGVCFH LFTSHHFSHQ LLKQQLPEIX bmy_07475T0/1-1383 ESLEDTFVSQ ANALQRRGRA GRVASGVCFH LFTSHHFSHQ LLKQQLPEIQ BACU001618/1-1383 ESLEDTFVSQ ANALQRKGRA GRVASGVCFH LFTSHHFSHQ LLKQQLPEIQ 1001 1050 ENSP00000295373/1-1386 RVPLEQLCLR IKILEMFSAH NLQSVFSRLI EPPHTDSLRA SKIRLRDLGA ENSBTAP00000019540/1-1382 RVPLEQLCLR IKILEMFSTH NLQSVFARLI EPPHADSLRA SKIRLRDLGA ENSTTRP00000013590/1-1381 XXXXXXXXXX IKILEMFSTH NLQSVFSRLI EPPHTDSLRA SKIRLRDLGA bmy_07475T0/1-1383 RVPLEQLCLR IKILEMFSTH NLQSVFSRLI EPPHXDSLCA SKIRLRDLGA BACU001618/1-1383 RVPLEQLCLR IKILEMFSTH NLQSVFSRLI EPPHTDSLRA SKIRLRDLGA 1051 1100 ENSP00000295373/1-1386 LTPDERLTPL GYHLASLPVD VRIGKLMLFG SIFRCLDPAL TIAASLAFK- ENSBTAP00000019540/1-1382 LTPDETLTPL GYHLASLPVD VRIGKLMLFG SIFRCLDPAL TIAASLAFK- ENSTTRP00000013590/1-1381 LTPDEKLTPL GYHLASLPVD VRIGKLMLFG SIFRCLDPAL TIAASLAFK- bmy_07475T0/1-1383 LTPDEKLTPL GYHLASLPVD VRIGKLMLFG SIFRCLDPAL TIAASLAFNH BACU001618/1-1383 LTPDEKLTPL GYHLASLPVD VRIGKLMLFG SIFRCLDPAL TIAASLAFK- 1101 1150 ENSP00000295373/1-1386 ---------- ---------- ----SPFVSP WDKKEEANQK KLEFAFANSD ENSBTAP00000019540/1-1382 ---------- ---------- ----SPFVSP WDKKEEANQK KLEFAFANSD ENSTTRP00000013590/1-1381 ---------- ---------- ----SPFVSP WDKKEEANQK KLEFAFANSD bmy_07475T0/1-1383 PPCTLFHAKY FPRHLASAVG KCHLKPWVSP WDKKEEANQK KLEFAFANSD BACU001618/1-1383 ---------- ---------- ----SPFVSP WDKKEEANQK KLEFAFANSD 1151 1200 ENSP00000295373/1-1386 YLALLQAYKG WQLSTKEGVR ASYNYCRQNF LSGRVLQEMA SLKRQFTELL ENSBTAP00000019540/1-1382 YLALLRAYKG WQLSMKEGMR ASYNYCRQNF LSGRVLQEMA SLKRQFTELL ENSTTRP00000013590/1-1381 YLALLRAYKG WQLSTKEGMR ASYNYCRQNF LSGRVLQEMA SLKRQFTELL bmy_07475T0/1-1383 YLALLRAYKG WQLSTKEGMR ASYNYCRQNF LSGRVLQEMA SLKRQFTELL BACU001618/1-1383 YLALLRAYKG WQLSTKEGMR ASYNYCRQNF LSGRVLQEMA SLKRQFTELL 1201 1250 ENSP00000295373/1-1386 SDIGFAREGL RAREIEKRAQ -GGDGVLDAT GEEANSNAEN PKLISAMLCA ENSBTAP00000019540/1-1382 SDIGFVKEGL RAREIEKRAQ GGGDGILDAT GEEANSNAEN PKLISAMLCA ENSTTRP00000013590/1-1381 SDIGFVKEGL RAREIEKRAQ GGGDGILDAT GEEANSNAEN PKLISAMLCA bmy_07475T0/1-1383 SDIGFVKEGL RAREIEKRTQ GGGDGILDAT GEEANSNAEN PKLISAMLCA BACU001618/1-1383 SDIGFVKEGL RAREIEKRTQ GGGDGILDAT GEEANSNAEN PKLISAMLCA 1251 1300 ENSP00000295373/1-1386 ALYPNVVQVK SPEGKFQKTS TGAVRMQPKS AELKFVTKND GYVHIHPSSV ENSBTAP00000019540/1-1382 ALYPNVVQVK SPEGKFQKTS TGAVRMQPKS DELKFVTKND GYVHIHPSSV ENSTTRP00000013590/1-1381 ALYPNVVQVK SPEGKFQKTS TGAVRMQPKS EELKFVTKND GYVHIHPSSV bmy_07475T0/1-1383 ALYPNVVQVK SPEGKFQKTS TGAVRMQPKS EELKFVTKND GY-------- BACU001618/1-1383 ALYPNVVQVK SPEGKFQKTS TGAVRMQPKS EELKFVTKND GYVHIHPSSV 1301 1350 ENSP00000295373/1-1386 NYQVRHFDSP YLLYHEKIKT SRVFIRDCSM VSVYPLVLFG GGQVNVQLQR ENSBTAP00000019540/1-1382 NYQVRHFDSP YLVYHEKIKT SRVFIRDCSM VSVYPLVLFG GGQVNVQLQK ENSTTRP00000013590/1-1381 NYQVRHFDSP YVLYHEKIKT SRVFIRDCSM VSVYPLVLFG GGQVNVQLHR bmy_07475T0/1-1383 ---------- -------IKT SRVFIRDCSM VSVYPLVLFG GGQVNVQLQR BACU001618/1-1383 NYQVRHFDSP YLVYHEKIKT SRVFIRDCSM VSVYPLVLFG GGQVNVQLQR 1351 1400 ENSP00000295373/1-1386 GEFVVSLDDG WIRFVAASHQ VAELVKELRC ELDQLLQDKI KNPSIDLCTC ENSBTAP00000019540/1-1382 GEFVVSLDDG WIRFAAASHQ VAELVKELRC ELDQLLQDKI KNPSIDLCTC ENSTTRP00000013590/1-1381 GEFIVSLDDG WIRFAAASHQ VAELVKELRC ELDQLLQDKI KNPSIDLCTC bmy_07475T0/1-1383 GEFIVSLDDG WIRFAAASHQ VAELVKELRC ELDQLLQDKI KNPSIDLCTC BACU001618/1-1383 GEFIVSLDDG WIRFAAASHQ VAELVKELRC ELDQLLQDKI KNPSIDLCTC 1401 1450 ENSP00000295373/1-1386 PRGSRIISTI VKLVTTQ ENSBTAP00000019540/1-1382 PRGSRIISMI VKLVTTQ ENSTTRP00000013590/1-1381 PRGSRIISMI VKLVTTQ bmy_07475T0/1-1383 PRGSRIISMI VKLVTTQ BACU001618/1-1383 PRGSQIISMI VKLVTTQ