KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:21 2014 Check: 00 .. Name: ENSP00000229304/1-236 Len: 240 Check: 4342 Weight: 1.00 Name: ENSBTAP00000019544/1-236 Len: 240 Check: 4389 Weight: 1.00 Name: ENSTTRP00000013291/1-187 Len: 240 Check: 4706 Weight: 1.00 Name: bmy_05542T0/1-195 Len: 240 Check: 8025 Weight: 1.00 Name: BACU017019/1-161 Len: 240 Check: 1571 Weight: 1.00 // 1 50 ENSP00000229304/1-236 --MTSEKGPS TGDPTLRRRI EPWEFDVFYD PRELRKEACL LYEIKWGMSR ENSBTAP00000019544/1-236 --MASDRGPP AGDPTLRRRI EPWEFEFSFD PRKFCKEACL LYEIQWGNNR ENSTTRP00000013291/1-187 --MASDRGPS AGDATLRRRI EPWEFEVSFD PRELSKETRL LYEIKWGKSQ bmy_05542T0/1-195 ---------- -------RRI EPWEFEVSFD PRELCKEACL LYEIKWGKRQ BACU017019/1-161 MIICWSTGPS AGDATSRRRI EPWEFEVSFD PRELCKETCL LYEIKWGKRQ 51 100 ENSP00000229304/1-236 KIWRSSGKNT TNHVEVNFIK KFTSERDFHP SMSCSITWFL SWSPCWECSQ ENSBTAP00000019544/1-236 DVWRHSGKNT TKHVERNFIE KIASERYFCP SIRCFIFWYL SWSPCWECSK ENSTTRP00000013291/1-187 RIWRHSGKNT TKHVERNFIE QITSERRFHR SVSCCIIWFL SWSPCWECSE bmy_05542T0/1-195 KVWRHSGKNT TKHVECNFIE KITSERHFPP SVSCCITWFL SWSPCWECSK BACU017019/1-161 KVWRHSGKNT TKHVECNFIE KITSERHFPP SVSCCITWFL SWSPCWECSK 101 150 ENSP00000229304/1-236 AIREFLSRHP GVTLVIYVAR LFWHMDQQNR QGLRDLVNSG VTIQIMRASE ENSBTAP00000019544/1-236 AIREFLNQHP NVTLVIYIAR LFQHMDPQNR QGLKDLVQSG VTIQVMRAPE ENSTTRP00000013291/1-187 AIREFLKQHP RVTLLIYVAR LFQHMDPRNR QGLRDLTHSG VTIQIMGPTE bmy_05542T0/1-195 AIREFLNQHP RVTLVIYVAR LFQHMDPQNR QGLRDLIHSG VTIQIMGPPG BACU017019/1-161 AIWEFLNQHP RVTLVIYVAR LFQHMDLQNR QGLRDLIHSG VTLQIMGPPG 151 200 ENSP00000229304/1-236 YYHCWRNFVN YPPGDEAH-- WPQYPPLWMM LYALELHCII LSLPPCLKIS ENSBTAP00000019544/1-236 YEYCWRNFVN YPRGKEAH-- WPRYPPLWMN LYALELYCII LGLPPCLHIS ENSTTRP00000013291/1-187 YDYCWRYFVN YAPGKEAH-- WPRYPPLLMK LYALELHCII L--------- bmy_05542T0/1-195 SPSLFEDFKK MSESADLVQT YSSKLPLPND STPYPFRYRV DTTSCDLEMN BACU017019/1-161 --------EN NKPGILSL-- Y--------- ---------- ---------- 201 250 ENSP00000229304/1-236 RRWQNHLTFF RLHLQNCHYQ TIPPHILLAT GLIHPSVAWR ENSBTAP00000019544/1-236 RRYQNQLIVF RLTLQNCHYQ MIPPYILLAT GMVQLPMTWR ENSTTRP00000013291/1-187 ---------- ---------- ---------- ---------- bmy_05542T0/1-195 RMISCDMLVT KT-------- ---------- ---------- BACU017019/1-161 ---------- ---------- ---------- ----------