KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:27 2014 Check: 00 .. Name: BACU014650/1-488 Len: 528 Check: 6094 Weight: 1.00 Name: bmy_20065T0/1-454 Len: 528 Check: 9576 Weight: 1.00 Name: ENSTTRP00000003318/1-528 Len: 528 Check: 9872 Weight: 1.00 Name: ENSP00000273130/1-523 Len: 528 Check: 7197 Weight: 1.00 Name: ENSBTAP00000019566/1-524 Len: 528 Check: 3997 Weight: 1.00 // 1 50 BACU014650/1-488 MAAVGRVGSF GSSPGGLTST YTGGPLANEL TSGNGGAAAG DDEDGQNLWS bmy_20065T0/1-454 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003318/1-528 MAAVGRVGSF GSSSAGLTST YTGGPLANEL TSGNGGAAAG DDEDGQNLWS ENSP00000273130/1-523 MAAVGRVGSF GSSPPGLSST YTGGPLGNEI ASGNGGAAAG DDEDGQNLWS ENSBTAP00000019566/1-524 MAAVGRVGSF GSCPPGLTAT YTGGPLANEL ASGNGAAAAG DDEDGQNLWS 51 100 BACU014650/1-488 CILSEVSTRS RSKLPAGKNV LLLGEDGAGK TSLIRKIQGI EEYKKGRGLE bmy_20065T0/1-454 -------MRL NKRSRDTKRE NPGGEDGAGK TSLIRKIQGI EEYKKGRGLE ENSTTRP00000003318/1-528 CPLSEVSTRL RSKLPAXXXX XXXXEDGAGK TSLIRKIQGI EEYKKGRGLE ENSP00000273130/1-523 CILSEVSTRS RSKLPAGKNV LLLGEDGAGK TSLIRKIQGI EEYKKGRGLE ENSBTAP00000019566/1-524 CILSEVSTRS RSKLPAGKNV LLLGEDGAGK TSLIRKIQGI EEYKKGRGLE 101 150 BACU014650/1-488 YLYLNVHDED RDDQTRCNVW ILDGDPYHKG LLKFSLDAIS LKDTLVMLVV bmy_20065T0/1-454 YLYLNVHDED RDDQTRCNVW ILDGDPYHKG LLKFSLDAIS LKDTLVTLVV ENSTTRP00000003318/1-528 YLYLNVHDED RDDQTRCNVW ILDGDPYHKG LLKFSLDAIS LKDTLVTLVV ENSP00000273130/1-523 YLYLNVHDED RDDQTRCNVW ILDGDLYHKG LLKFSLDAVS LKDTLVMLVV ENSBTAP00000019566/1-524 YLYLNVHDED RDDQTRCNVW ILDGDPYHKG LLKFSLDAIS LKDTLVMLVV 151 200 BACU014650/1-488 DMSKPWTALD SLQKWASVVR EHIDKLKIPP EEMKEMEQKL IRDFQEYVEP bmy_20065T0/1-454 DLSKPWTALD SLQKWASVVR EHIDKLKIPP EEMKEMEQKL IRDFQEYVEP ENSTTRP00000003318/1-528 DMSKPWTALD SLQKWASVVR EHIDKLKIPP EEMKEMEQKL IRDFQEYVEP ENSP00000273130/1-523 DMSKPWTALD SLQKWASVVR EHVDKLKIPP EEMKQMEQKL IRDFQEYVEP ENSBTAP00000019566/1-524 DMSKPWTALD SLQKWASVVR EHIDKLKIPP EEMKEMEQKL VRDFQEYVEP 201 250 BACU014650/1-488 GEDFPASPQR RNTASQEDKD DSVVLPLGAD TLTQNLGIPV LVVCTKCDAI bmy_20065T0/1-454 GEDFPASPQR RNTASQEDKD DSVVLPLGAD TLTQNLGIPV LVVCTKCDAI ENSTTRP00000003318/1-528 GEDFPASPQR RTTASQEDKD DSVVLPLGAD TLTQNLGIPV LVVCTKCDAI ENSP00000273130/1-523 GEDFPASPQR RNTASQEDKD DSVVLPLGAD TLTHNLGIPV LVVCTKCDAI ENSBTAP00000019566/1-524 GEDFPASPQR RSTASQEDRD DSVLLPLGAD TLTQNLGVPV LVVCTKCDAI 251 300 BACU014650/1-488 SVLEKEHDYR DEHFDFIQSH IRKFCLQ--- ---------- ------FRWC bmy_20065T0/1-454 SVLEKEHDYR DEHFDFIQSH IRKFCLQYGA ALIYTSVKEN KNIDLVYKYI ENSTTRP00000003318/1-528 SVLEKEHDYR DEHFDFIQSH IRKFCLQYGA ALIYTSVKEN KNIDLVYKYI ENSP00000273130/1-523 SVLEKEHDYR DEHFDFIQSH IRKFCLQYGA ALIYTSVKEN KNIDLVYKYI ENSBTAP00000019566/1-524 SVLEKEHDYR DEHFDFIQSH IRKFCLQYGA ALIYASVKEN KNIDLVYKYI 301 350 BACU014650/1-488 TIIIISFSFE VRP--VDFSM MSSPAGWDND KKIGILHENF QMLKAEDNFE bmy_20065T0/1-454 VQKLYGFPYK IPAIVVEKDA VFIPAGWDND KKIGILHENF QMLKAEDNFE ENSTTRP00000003318/1-528 VQKLYGFPYK IPAIVVEKDA VFIPAGWDND KKIGILHENF QMLKAEDNFE ENSP00000273130/1-523 VQKLYGFPYK IPAVVVEKDA VFIPAGWDND KKIGILHENF QTLKAEDNFE ENSBTAP00000019566/1-524 VQKLYGFPYK IPAVVVEKDA VFIPAGWDND KKIGILHENF QTLKAEDNFE 351 400 BACU014650/1-488 DIITKPPVRK FVHEKEIVAE DDQVFLMKLQ ---------- -----DASPR bmy_20065T0/1-454 DIITKPPVRK FVHEKEIVAE DDQVFLMKLQ SLLAKQPPTA AGRPVDASPR ENSTTRP00000003318/1-528 DIITKPPVRK FVHEKEIVAE DDQVFLMKLQ SLLAKQPPTA AGRPVDASPR ENSP00000273130/1-523 DIITKPPVRK FVHEKEIMAE DDQVFLMKLQ SLLAKQPPTA AGRPVDASPR ENSBTAP00000019566/1-524 DIITKPPVRK FVHEKEIMAE DDQVFLMKLQ SLLAKQPPTA AGRPVDASPR 401 450 BACU014650/1-488 VPGGSPRTPN RSVSSNVASV SPIPAGSKKI DPNMKAGATS EGVLANFFNS bmy_20065T0/1-454 VPGGSPRTPN RSVSSNVASV SPIPAGSKKI DPNMKAGATS EGVLANFFNS ENSTTRP00000003318/1-528 VPGGSPRTPN RSVSSNVASV SPIPAGSKKI DPNMKAGATS EGVLANFFNS ENSP00000273130/1-523 VPGGSPRTPN RSVSSNVASV SPIPAGSKKI DPNMKAGATS EGVLANFFNS ENSBTAP00000019566/1-524 VPGGSPRTPN RSVSSNVASV SPIPAGSKKI DPNMKAGATS EGVLANFFNS 451 500 BACU014650/1-488 LLSKKTGSPG GSGVGGGSPG GGAG----GG SSGLPPSAKK SGQKPVLSDV bmy_20065T0/1-454 LLSKKTGSPG GSGVGGGSPG GGAG------ ---------- -GQKPVLSDV ENSTTRP00000003318/1-528 LLSKKTGSPG GPGVGGGSPG GGAGGGAGGG SSGLPPSAKK SGQKPVLSDV ENSP00000273130/1-523 LLSKKTGSPG GPGVSGGSPA GGAG----GG SSGLPPSTKK SGQKPVL-DV ENSBTAP00000019566/1-524 LLSKKTGSPG GPGVGGGSPG GGAA----GG GGGLPPSAKK SGQKPVLSDV 501 550 BACU014650/1-488 HAELDRIARK PVTASPAAPT SPTEGEAS bmy_20065T0/1-454 HAELDRIARK PVTASPTAPT SPTEGEAS ENSTTRP00000003318/1-528 HAELDRIARK PVTASPATPA SPTEGEAS ENSP00000273130/1-523 HAELDRITRK PVTVSPTTPT SPTEGEAS ENSBTAP00000019566/1-524 HAELDRIARK PVTVSTTTPT SPAEGEAS