KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:08:27 2014 Check: 00 .. Name: ENSP00000393198/1-247 Len: 253 Check: 4755 Weight: 1.00 Name: ENSBTAP00000019571/1-222 Len: 253 Check: 4977 Weight: 1.00 Name: bmy_10007T0/1-184 Len: 253 Check: 4014 Weight: 1.00 Name: ENSTTRP00000012511/1-151 Len: 253 Check: 4785 Weight: 1.00 // 1 50 ENSP00000393198/1-247 MAADTPGKPS ASPMAGAPAS ASRTPDKPRS AAEHRKVGSR PGVRGATGGR ENSBTAP00000019571/1-222 MPADIPGKPR ASPRAGAAAG ASRTPDQPRS VAEHRK---- ---------- bmy_10007T0/1-184 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012511/1-151 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000393198/1-247 EGRGTQPVPD PQSSKPVMEK RRRARINESL AQLKTLILDA LRKESSRHSK ENSBTAP00000019571/1-222 ---------- --SSKPVMEK RRRARINESL AQLQSLLLDA LRKESSRRSK bmy_10007T0/1-184 ---------- -------MEK RRRARINESL AQLQSLLLDA LRKESSRRSK ENSTTRP00000012511/1-151 ---------- ---------- ---------- ---------- ----SSRRSK 101 150 ENSP00000393198/1-247 LEKADILEMT VRHLRSLRRV QVTAALSADP AVLGKYRAGF HECLAEVNRF ENSBTAP00000019571/1-222 LEKADILELT VRHLQSLRRV QVTAALRSDP AILGKYRAGF HECLAEVNRF bmy_10007T0/1-184 LEKADILELT VKHLQSLRRV QVTAALRADP AVLGKYRAGF HECLAEVNRF ENSTTRP00000012511/1-151 LEKADILELT VKHLQSLRRV QVTAALRADP AVLGKYRAGF HECLAEVNRF 151 200 ENSP00000393198/1-247 LAGCEGVPAD VRSRLLGHLA ACLRQLGPSR RPASLSPAAP AEAPAPEVYA ENSBTAP00000019571/1-222 LAGCEGVPAD VRSRLLCHLA ACLARLGPAR RPLPLAPATE AQE--PEIYA bmy_10007T0/1-184 LAGCEGVPAD VRSRLLGHLA TCLARLGPSR RPLPPAPAAE VLA--PAVYA ENSTTRP00000012511/1-151 LAGCEGVPAD VRSRLLGHLA TCLARLGPLR RPLPPAPAAE VLA--PAVYA 201 250 ENSP00000393198/1-247 GRPLLPSLGG PFPL------ LAPPLLPGLT RALPAAPRAG PQGPGGPWRP ENSBTAP00000019571/1-222 GRPPPPAFDG PCPLPRPGAA LAPIFLPGLA ---LAAPGAG AQGQGAPWRP bmy_10007T0/1-184 GRPPPPAFDG PCPLPRSGAV LAPPFLPGRT GAPLAAPGAA AQGRGAPWRP ENSTTRP00000012511/1-151 GRSPPPAFDG PCPL------ LAPPFLPGRT GEPLAAPGAA AQGRGAPWRP 251 300 ENSP00000393198/1-247 WLR ENSBTAP00000019571/1-222 WLR bmy_10007T0/1-184 WLR ENSTTRP00000012511/1-151 WLR