KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:29 2014 Check: 00 .. Name: ENSP00000283645/1-1024 Len: 1120 Check: 7970 Weight: 1.00 Name: ENSTTRP00000005891/1-1022 Len: 1120 Check: 2251 Weight: 1.00 Name: ENSBTAP00000019582/1-1024 Len: 1120 Check: 9291 Weight: 1.00 Name: bmy_14945T0/1-981 Len: 1120 Check: 2625 Weight: 1.00 Name: BACU009936/1-1026 Len: 1120 Check: 5997 Weight: 1.00 // 1 50 ENSP00000283645/1-1024 MARHGPPWSR LDAQQERDVR ELVRGVAGLQ DEADPNFQLA LNFAWSNFR- ENSTTRP00000005891/1-1022 MASPAPSWSR LDRRQERDVR ELVRLVTGVQ DEADPNFQLA LHFAWSNFR- ENSBTAP00000019582/1-1024 MASLPASWSR LERRQERDVR ELVRLVAGVQ DEADPNFQLA LHFAWSNFR- bmy_14945T0/1-981 MASPGPSWSW LDRRQERDVR ELVRLVAGVQ NEADPNFQLA LHFAWSNFRC BACU009936/1-1026 MASPAPSWSW LDRRQERDVR ELVRLVAGVH DEADPNFQLA LHFAWSNFR- 51 100 ENSP00000283645/1-1024 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005891/1-1022 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019582/1-1024 ---------- ---------- ---------- ---------- ---------- bmy_14945T0/1-981 GRGTGAGDGK GSGEVWGAWR DRQSPSAPCR SSCLVTSRLL GPRRGDTRKL BACU009936/1-1026 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000283645/1-1024 --FHRFLDVN SHKIEKTIEG IYEKFVIHSD LSKAASWKRL TEEFLNAPLP ENSTTRP00000005891/1-1022 --FHRFLDVN SHKVEKTIEG IYEKFIIHSD LSKAASWKRL TEEFLNASLP ENSBTAP00000019582/1-1024 --FHRFLDVN SHKVEKTIEG IYEKFIIHSD LSKAASWKRL TEEFLNASLP bmy_14945T0/1-981 KQFHRFLDVN SHKVEKTIEG IYEKFIIHSD LSKAASWKRL TEEFLNASLP BACU009936/1-1026 --FHRFLDVN SHKVEKTIEG IYEKFIIHSD LSKAASWKRL TEEFLNASLP 151 200 ENSP00000283645/1-1024 SIKEI----- ---------- --KTDAHYSI LSLLLCLSDS PSNSSYVETP ENSTTRP00000005891/1-1022 SIKEI----- ---------- --KTDAHYSI LSLLLCLSDS PSNSNYVETP ENSBTAP00000019582/1-1024 NIKEF----- ---------- --KTDVHYSI LSLLLCLSDS PLNSNYVETP bmy_14945T0/1-981 SIKEIKKALT SLSDSYFSFL VLKTDAHYSI LSLLLCLSDS PSNSNYVETP BACU009936/1-1026 SIKEI----- ---------- --KTDAHYSI LSLLLCLSDS PSNSNYVETP 201 250 ENSP00000283645/1-1024 RNKEVEKKDD FDWGKYLMED EEMDIGPYMD TPNWSEESEE ENDQQPLSRE ENSTTRP00000005891/1-1022 RDKEVEKKDD FDWGKYLMEG EEIDLGPNVD TPXXXXXXXX XXXXXXXXXX ENSBTAP00000019582/1-1024 RDKEMEKKDD FDWGKYLMEG EEIDLGPSVN TPNWSEESED ENDQQSLSRE bmy_14945T0/1-981 RDKEVEKKDD FDWGKYLMEG EEIDLGSNVD TPNWSEESED EDDQQPLSRE BACU009936/1-1026 RDKEVEKKDD FDWGKYLMEG EEIDLGSNVD TPNWSEESED EDDQQPLSRE 251 300 ENSP00000283645/1-1024 DSGIQVDRTP LEEQDQNRKL DPCISWKDEP DDRSWLEHHV VHQYWTARPS ENSTTRP00000005891/1-1022 XXXXXXXXXX XXXXXXXXXX XXXXXXXXES DARSWLEQHV VRQYWTVRSS ENSBTAP00000019582/1-1024 DSGIQVDRTP LEEQDQNRKL GPRVIWKDEP DARSWLEQHV VHQYWTVRSS bmy_14945T0/1-981 DSGIQVDRTP LEEQDQNKKL GPQVSWKDES DARSWLEQHV VRQYWTVRSS BACU009936/1-1026 DSGIQVDRTP LEEQDQNKKL GPQVSWKDES DARSWLEQHV VRQYWTVRSS 301 350 ENSP00000283645/1-1024 QFPHSLHLHS NLAAVWDQHL YSSDPLYVPD DRVLVTETQV IRETLWLLSG ENSTTRP00000005891/1-1022 RFPHSLHLHS NLAAVWDQHL YTSDPLYVPD DRVFVTETQV IRETLWLLSG ENSBTAP00000019582/1-1024 RFPHSLHLHS NLATVWDQHL YSSDPLYVPD DRVFVTETQV IRETLWLLSG bmy_14945T0/1-981 RFPHSLHLHS NLAAVWDQHL YSSDPLYVPD DRVFVTETQV IRETLWLLSG BACU009936/1-1026 RFPHSLHLHS NLAAVWDQHL YSSDPLYVPD DRVFVTETQV IRETLWLLSG 351 400 ENSP00000283645/1-1024 VKKLFIFQLI DGKVTVRNNI IVTHLTHSCL RSVLEQIAAY GQVVFRLQEF ENSTTRP00000005891/1-1022 VKKLFIFQLI DGKVTVRNNI IVTHLTNSCL RSVLEQIAAY GQVVFRLQEF ENSBTAP00000019582/1-1024 VKKLFIFQLI DGKVTMRNNI IVTHLTHSCL RSVLEQIAAY GQVVFRLQEF bmy_14945T0/1-981 VKKLFIFQLI DGKVTVRNNI IVTHLTHSCL RSVLEQIAAY GQVVFRLQEF BACU009936/1-1026 VKKLFIFQLI DGKVTVRNNI IVTHLTHSCL RSVLEQIAAY GQVVFRLQEF 401 450 ENSP00000283645/1-1024 IDEVMGHSSE SMLPGSGSVP KKSTEAPFRT YQAFMWALYK YFISFKEELA ENSTTRP00000005891/1-1022 IDEIMGHSSE SMLPGNGSVP KKSTEAPFRT YQAFMWALYK YFISFKEELT ENSBTAP00000019582/1-1024 IDEVMGHSSE SMLPGNGSVP KKSTEAPFRT YQAFMWALYK YFINFKEELA bmy_14945T0/1-981 IDEIMGHSSE SLLPGNSSVP KKSTEAPFRT YQAFMWALYK YFISFKEELT BACU009936/1-1026 IDEIMGHSSE SLLPGNSSVP KKSTEAPFRT YQAFMWALYK YFISFKEELT 451 500 ENSP00000283645/1-1024 EIEKCIINND TTITLAIVVD KLAPRLSQLK VLHKVFSTGV AEVPPDTRNV ENSTTRP00000005891/1-1022 EIEKCIINND TTITLAIVVD KLSPRLAQLK VLHKVFSTGV AEVPPDTRNV ENSBTAP00000019582/1-1024 EIEKCIINND TTVTLAIVVD KLSPRLAQLK VLHKVFSTGV AEVPPDTRNV bmy_14945T0/1-981 EIEKCIINND TTITLAIVVD KLSPRLAQLK VLHKVFSTGV AEVPPDTRNV BACU009936/1-1026 EIEKCIINND TTITLAIVVD KLSPRLAQLK VLHKVFSTGV AEVPPDTRNV 501 550 ENSP00000283645/1-1024 VRASHLLNTL YKAILEYDNV GEASEQTVSL LFSLWVETVR PYLQTVDEWI ENSTTRP00000005891/1-1022 VRASHLLNTL YKAILEYDNV GEASEQTVSL LFSLWVETVR PYLQTVDEWI ENSBTAP00000019582/1-1024 VRASHLLNTL YKAILEYDNV GEASEQTVSL LFSLWVETVR PYLQTVDEWI bmy_14945T0/1-981 VRASHLLNTL YKAILEYDNV GEASEQTVSL LFSLWVETVR PYLQTVDEWI BACU009936/1-1026 VRASHLLNTL YKAILEYDNV GEASEQTVSL LFSLWVETVR PYLQTVDEWI 551 600 ENSP00000283645/1-1024 VHGHLWDGAR EFIIQRNKNV PVNHRDFWYA TYTLYSVSEK TENEEKMSDN ENSTTRP00000005891/1-1022 VHGHLCDCAR EFIIQRNKNV PVNHRDFWYA TYTLYSVSEK TENEEKMSDN ENSBTAP00000019582/1-1024 VHGHLCDSAR EFIIQRNKNV PVNHRDFWYA TYTLYSVSEK TENEEKMSDN bmy_14945T0/1-981 VHGHLCDCAR EFIIQRNKNV PVNHRDFWYA TYTLYSVSEK TENEEKMSDN BACU009936/1-1026 VHGHLCDCAR EFIIQRNKNV PVNHRDFWYA TYTLYSVSEK TENEEKLSDN 601 650 ENSP00000283645/1-1024 ASASSGSDQG PSSRQHTMVS FLKPVLKQII MAGKSMQLLK NLQCAESTTC ENSTTRP00000005891/1-1022 ASASSGSDQG PSSRQHTMVS FLKPVLKQII MAGKSMQLLK NLQCMESTTC ENSBTAP00000019582/1-1024 ASASSGSDQG LSSRQHTMVS FLKPVLKQII MAGKSMQLLK NLQCTESTTC bmy_14945T0/1-981 ASASSGSDQG PSSRQHTMVS FLKPVLKQII MAGKSMQLLK NLQCMESTTC BACU009936/1-1026 ASASSGSDQG PSSRQHTMVS FLKPVLKQII MAGKSMQLLK NLQCMESTTC 651 700 ENSP00000283645/1-1024 QAGARDAERK SLYTLFLESV QSRLRHGEDS TPQVLTEQQA TKENLMKMQS ENSTTRP00000005891/1-1022 QATARDAERK SLYTLFLESV QSRLRHGEDS TAQALTEQQA TRETLIKMQS ENSBTAP00000019582/1-1024 PATARDAERK SLYTLFLESV QSRLRHGEDF TAQALTEQQA TRETLIKMQS bmy_14945T0/1-981 QATARDAERK SLYTLFLESV QSRLRHGEDS TAQALTEQQA TRETLIKMQS BACU009936/1-1026 QATARDAERK SLYTLFLESV QSRLRHGEDS TAQALTEQQA TRETLIKMQS 701 750 ENSP00000283645/1-1024 IAESHLELDD VHDPLLAINF ARMYLEQSDF HEKFAGGDVC VDRSSESVTC ENSTTRP00000005891/1-1022 IAERHLELDD VHDPLLAINF ARLYLEQSDF HEKFAGGDIC VDRSSESVTC ENSBTAP00000019582/1-1024 IAERHLELDD VHDPLLAINF ARLYLEQSDF HEKFAGGDVC VDRSSESVTC bmy_14945T0/1-981 IAERHLELDD VHDPLLAINF ARLYLEQSDF HEKFAGGDIC VDRSSESVTC BACU009936/1-1026 IAERHLELDD VHDPLLAINF ARLYLEQSDF HEKFAGGDIC VDRSSESVTC 751 800 ENSP00000283645/1-1024 QTFELTLRSC LYPHIDKQYL DCCGNLMQTL KKDYRLVEYL QAMRNFFLME ENSTTRP00000005891/1-1022 QTFELTLRSC LYPHIDKQYL DCCGNLMRTL KKDYRLVEYL QAMRNFFLME ENSBTAP00000019582/1-1024 QTFELTLRSC LYPHIDKQYL DCCGNLMRTL KKDYRLVEYL QAMRNFFLME bmy_14945T0/1-981 QTFELTLRSC LYPHIDKQYL DCCGNLMRTL KKDYRLVEYL QAMRNFFLME BACU009936/1-1026 QTFELTLRSC LYPHIDKQYL DCCGNLMRTL KKDYRLVEYL QAMRNFFLME 801 850 ENSP00000283645/1-1024 GGDTMYDFYT SIFDKIREKE TWQNVSFLNV QLQEAVGQRY PEDSSRLSIS ENSTTRP00000005891/1-1022 GGDTMYDFYT SIFDKIREKE TWQNVSFLNV QLQEAVGQRY PEDSSRLSIS ENSBTAP00000019582/1-1024 GGDTMYDFYT SIFDKIRERE TWQNVSFLNV QLQEAVGQRY PEDSSRLSIS bmy_14945T0/1-981 GGDTMYDFYT SIFDKIREKE TWQNVSFLNV QLQEA----- ---------- BACU009936/1-1026 GGDTMYDFYT SIFDKIREKE TWQNVSFLNV QLQEAVGQRY PEDSSRLSIS 851 900 ENSP00000283645/1-1024 FENVDTAKKK LPVHILDGLT LSYKVPWPVD IVISLECQKI YNQVFLLLLQ ENSTTRP00000005891/1-1022 FENVDTAKKK LPVHILDGLT LSYKVPWPVD IVISLECQKI YNQVFLLLLQ ENSBTAP00000019582/1-1024 FENVDTAKKK LPVHILDGLT LSYKVPWPVD IVISLECQKI YNQVFLLLLQ bmy_14945T0/1-981 ---------- ---------- ---------- ---------- ---------- BACU009936/1-1026 FENVDTAKKK LPVHILDGLT LSYKVPWPVD IVISLECQKI YNQVFLLLLQ 901 950 ENSP00000283645/1-1024 IKWAKYSLDV LLFGELVSTA EKPRLKEGLI HEQDTVAQFG PQKEPVRQQI ENSTTRP00000005891/1-1022 IKWAKYSLDV LLFGELASPA EKPQL-EGLL GGQDTAANFG PQKEPVRQQI ENSBTAP00000019582/1-1024 IKWAKYSLDV LLFGELANPA DRSQRKEGVL GNPDTAAHFG PQKEPVRLQV bmy_14945T0/1-981 ---------- ---------- ---------- ---------- ---------- BACU009936/1-1026 IKWAKYSLDV LLFGELARPA ERPQL-EGLL GGQDTAANFG PQKEPVRQQI 951 1000 ENSP00000283645/1-1024 HRMFLLRVKL MHFVNSLHNY IMTRILHSTG LEFQHQVEEA KDLDQLIKIH ENSTTRP00000005891/1-1022 HRMFLLRVKL MHFVNSLHNY IMTRILHSTG LEFQHQVEEA KDLDQLIKIH ENSBTAP00000019582/1-1024 HRMFLLRVKL MHFVNSLHNY IMTRILHSTG LEFQHQVEEA KDLDQLIKIH bmy_14945T0/1-981 ---------- ---------- ----ILHSTG LEFQHQVEEA KDLDQLIKIH BACU009936/1-1026 HRMFLLRVKL MHFVNSLHNY IMTRILHSTG LEFQHQVEEA KDLDQLIKIH 1001 1050 ENSP00000283645/1-1024 YRYLSTIHDR CLLREKVSFV KEAIMKVLNL ALMFADGWQA GLGTWRMESI ENSTTRP00000005891/1-1022 YRYLSTIHDR CLLREKVSFV KEAIMKVLNL ALMFADGWQA GLGAWQMESI ENSBTAP00000019582/1-1024 YRYLSTIHDR CLLREKVSFV KEAIMKVLNL ALMFAEGWQA GLGAWQMESI bmy_14945T0/1-981 YRYLSTIHDR CLLREKVSFV KEAIMKVLNL ALMFADGWQA GLGAWQMESI BACU009936/1-1026 YRYLSTIHDR CLLREKVSFV KEAIMKVLNL ALMFADGWQA GLGAWQMESI 1051 1100 ENSP00000283645/1-1024 EKMESDFKNC HMFLVTILNK AVCRGSFPH- ---------- ---------- ENSTTRP00000005891/1-1022 EKMESDFKNC HMFLVTVLNK AVCRGSFPH- ---------- ---------- ENSBTAP00000019582/1-1024 EKMESDFKNC HMFLVTILNK AVCRGSFPH- ---------- ---------- bmy_14945T0/1-981 EKMESDFKNC HMFLVTVLNK AVCRGSFPHR EYCVKILLLL YFLITKSTCY BACU009936/1-1026 EKMESDFKNC HMFLVTVLNK AVCRGSFPH- ---------- ---------- 1101 1150 ENSP00000283645/1-1024 --LESLALSL MAGMEQS--- ENSTTRP00000005891/1-1022 --LESLALSL MAGMEQ---- ENSBTAP00000019582/1-1024 --LESLALSL MAGMEQS--- bmy_14945T0/1-981 CFVESLALSL MAGMEQISSV BACU009936/1-1026 --LESLALSL MAGMEQISSV